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--- ajax/ajpdb.c.orig Mon Jan 23 12:19:22 2006
+++ ajax/ajpdb.c Fri Aug 19 13:49:12 2005
@@ -1198,7 +1198,7 @@
osstr = ajStrNew();
xstr = ajStrNew();
- /* Start of main application loop */
+ /* Start of main loop */
while(ajFileReadLine(inf,&line))
{
if(ajStrPrefixC(line,"XX"))
@@ -1313,6 +1313,8 @@
(ret)->Nchn = ncha;
(ret)->Ngp = ngrp;
+
+ continue;
}
@@ -1382,7 +1384,11 @@
ajStrToken(&token,&handle,NULL);
ajStrToInt(token,&mod);
if((mode == 0) && (mod!=1))
- break;
+ {
+ /* break; */
+ /* Discard remaining AT lines */
+ while(ajFileReadLine(inf,&line) && ajStrPrefixC(line,"AT"));
+ }
/* Chain number */
ajStrToken(&token,&handle,NULL);
@@ -1463,7 +1469,10 @@
"jison@hgmp.mrc.ac.uk");
}
else
+ {
ajListPushApp((ret)->Chains[chn-1]->Atoms,(void *)atom);
+ }
+ continue;
}
/* Parse residue line */
@@ -1479,8 +1488,11 @@
ajStrToken(&token,&handle,NULL);
ajStrToInt(token,&mod);
if((mode == 0) && (mod!=1))
- break;
-
+ {
+ /* break;*/
+ /* Discard remaining RE lines */
+ while(ajFileReadLine(inf,&line) && ajStrPrefixC(line,"RE"));
+ }
/* Chain number */
ajStrToken(&token,&handle,NULL);
ajStrToInt(token,&chn);
@@ -1585,6 +1597,8 @@
ajStrToFloat(token,&residue->pol_rel);
ajListPushApp((ret)->Chains[chn-1]->Residues,(void *)residue);
+
+ continue;
}
}
/* End of main application loop */
|
