diff options
Diffstat (limited to 'biology/emboss/files/patch-ajpdb.c')
| -rw-r--r-- | biology/emboss/files/patch-ajpdb.c | 67 |
1 files changed, 67 insertions, 0 deletions
diff --git a/biology/emboss/files/patch-ajpdb.c b/biology/emboss/files/patch-ajpdb.c new file mode 100644 index 0000000..39b7300 --- /dev/null +++ b/biology/emboss/files/patch-ajpdb.c @@ -0,0 +1,67 @@ +--- ajax/ajpdb.c.orig Mon Jan 23 12:19:22 2006 ++++ ajax/ajpdb.c Fri Aug 19 13:49:12 2005 +@@ -1198,7 +1198,7 @@ + osstr = ajStrNew(); + xstr = ajStrNew(); + +- /* Start of main application loop */ ++ /* Start of main loop */ + while(ajFileReadLine(inf,&line)) + { + if(ajStrPrefixC(line,"XX")) +@@ -1313,6 +1313,8 @@ + + (ret)->Nchn = ncha; + (ret)->Ngp = ngrp; ++ ++ continue; + } + + +@@ -1382,7 +1384,11 @@ + ajStrToken(&token,&handle,NULL); + ajStrToInt(token,&mod); + if((mode == 0) && (mod!=1)) +- break; ++ { ++ /* break; */ ++ /* Discard remaining AT lines */ ++ while(ajFileReadLine(inf,&line) && ajStrPrefixC(line,"AT")); ++ } + + /* Chain number */ + ajStrToken(&token,&handle,NULL); +@@ -1463,7 +1469,10 @@ + "jison@hgmp.mrc.ac.uk"); + } + else ++ { + ajListPushApp((ret)->Chains[chn-1]->Atoms,(void *)atom); ++ } ++ continue; + } + + /* Parse residue line */ +@@ -1479,8 +1488,11 @@ + ajStrToken(&token,&handle,NULL); + ajStrToInt(token,&mod); + if((mode == 0) && (mod!=1)) +- break; +- ++ { ++ /* break;*/ ++ /* Discard remaining RE lines */ ++ while(ajFileReadLine(inf,&line) && ajStrPrefixC(line,"RE")); ++ } + /* Chain number */ + ajStrToken(&token,&handle,NULL); + ajStrToInt(token,&chn); +@@ -1585,6 +1597,8 @@ + ajStrToFloat(token,&residue->pol_rel); + + ajListPushApp((ret)->Chains[chn-1]->Residues,(void *)residue); ++ ++ continue; + } + } + /* End of main application loop */ |
