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# Created by: Jason W. Bacon <jwbacon@tds.net>
# $FreeBSD$
############################################################################
# http://www.neuro.mcw.edu/Ports has the latest source distribution from
# which this port is built. It will be updated as time permits.
#
# afni.nimh.nih.gov is the ultimate source for AFNI, and will always
# contain the latest source release. If this port is not up to date,
# you can download the latest sources and build manually.
PORTNAME= afni
PORTVERSION= 2012.04.17.2129
PORTREVISION= 12
CATEGORIES= science biology graphics
MASTER_SITES= http://personalpages.tds.net/~jwbacon/Ports/distfiles/AFNI/${PORTVERSION}/ \
http://www.acadix.biz/Ports/distfiles/AFNI/${PORTVERSION}/
DISTFILES= afni_src.tgz afni.1 3dClustBust.c \
TTatlas+tlrc.BRIK.gz TTatlas+tlrc.HEAD CA_EZ_v1.5-July3107.tgz
DIST_SUBDIR= AFNI-${PORTVERSION}
EXTRACT_ONLY= afni_src.tgz CA_EZ_v1.5-July3107.tgz
MAINTAINER= jwbacon@tds.net
COMMENT= Advanced Functional Neuro Imaging
LICENSE= GPLv2
LIB_DEPENDS= libXm.so:${PORTSDIR}/x11-toolkits/open-motif \
libR.so:${PORTSDIR}/math/R \
libgsl.so:${PORTSDIR}/math/gsl \
libnetcdff.so:${PORTSDIR}/science/netcdf-fortran
RUN_DEPENDS= mpeg_encode:${PORTSDIR}/multimedia/mpeg_encode \
whirlgif:${PORTSDIR}/graphics/whirlgif \
ppmtogif:${PORTSDIR}/graphics/netpbm \
endian:${PORTSDIR}/sysutils/endian \
qhull:${PORTSDIR}/math/qhull5
CONFLICTS= im-[0-9]* \
nifticlib-[0-9]* \
open-usp-tukubai-[0-9]*
USES= gettext gmake iconv jpeg:run motif perl5 shebangfix
SHEBANG_FILES= suma_change_spec 3dPAR2AFNI.pl
# Some prereqs use gcc anyway
USE_GCC= yes
OPTIONS_DEFINE= DOCS
BROKEN_sparc64= Does not compile: "undefined reference to '_mcount'"
USE_GL= glw glu
USE_XORG= xi
MAKE_ENV= CC="${CC}"
MAKE_JOBS_UNSAFE=yes
WRKSRC= ${WRKDIR}/afni_src
ALL_TARGET= vastness suma
###########################################################################
# Install parameters
SUB_FILES= pkg-message afni.cshrc afni.profile
INSTALL_WRKSRC= ${WRKSRC}/BSD
PRESTAGE= ${WRKSRC}/prestage
X11R6_FILES= coxplot/Makefile \
coxplot/Makefile.f2c \
3DEdge/src/Makefile \
SUMA/SUMA_Makefile \
edt_blur.c \
suma_datasets.c \
SUMA/SUMA_Load_Surface_Object.c \
SUMA/SUMA_MiscFunc.c \
SUMA/SUMA_ParseCommands.c \
SUMA/GLUT/libglut/glut_event.c \
SUMA/SUMA_Surface_IO.c
post-extract:
@${CP} -f ${FILESDIR}/Makefile.FreeBSD_PORT ${WRKSRC}/Makefile
.for f in ${X11R6_FILES}
@${REINPLACE_CMD} -e 's|/usr/X11R6|$${LOCALBASE}|g' ${WRKSRC}/${f}
.endfor
@${REINPLACE_CMD} -E 's|AFNI_[0-9_]+|${PORTVERSION}|g' ${WRKSRC}/AFNI_label.h
@${CP} ${DISTDIR}/${DIST_SUBDIR}/afni.1 ${WRKDIR}
@${CP} ${DISTDIR}/${DIST_SUBDIR}/3dClustBust.c ${WRKSRC}
@${REINPLACE_CMD} "s|%%PREFIX%%|${PREFIX}|g" ${WRKDIR}/afni.1
post-build:
${MKDIR} ${PRESTAGE}/bin \
${PRESTAGE}/scripts \
${PRESTAGE}/lib \
${PRESTAGE}/include \
${PRESTAGE}/trash \
${PRESTAGE}/doc \
${PRESTAGE}/share
${MV} ${INSTALL_WRKSRC}/libf2c.a \
${PRESTAGE}/trash
${MV} ${INSTALL_WRKSRC}/*.a \
${INSTALL_WRKSRC}/*.so \
${PRESTAGE}/lib
${MV} ${INSTALL_WRKSRC}/funstuff \
${INSTALL_WRKSRC}/AFNI.*rc \
${INSTALL_WRKSRC}/afnigui* \
${PRESTAGE}/share
${MV} ${INSTALL_WRKSRC}/*.h \
${PRESTAGE}/include
${MV} ${INSTALL_WRKSRC}/README* \
${PRESTAGE}/doc
${MV} ${INSTALL_WRKSRC}/abut ${INSTALL_WRKSRC}/afni_abut
for binary in `${FILE} ${INSTALL_WRKSRC}/* | fgrep 'ELF' | ${AWK} -F ':' ' { print $$1 }'` ; do \
${MV} $${binary} ${PRESTAGE}/bin ; \
done
${MV} ${INSTALL_WRKSRC}/* \
${PRESTAGE}/scripts
do-install:
${MKDIR} ${STAGEDIR}${DATADIR} \
${STAGEDIR}${PREFIX}/lib/afni \
${STAGEDIR}${PREFIX}/include/afni
${INSTALL_DATA} ${PRESTAGE}/lib/* ${STAGEDIR}${PREFIX}/lib/afni
${INSTALL_DATA} ${PRESTAGE}/include/* ${STAGEDIR}${PREFIX}/include/afni
${CP} -R ${PRESTAGE}/share/* ${STAGEDIR}${DATADIR}
${INSTALL_PROGRAM} ${PRESTAGE}/bin/* ${STAGEDIR}${PREFIX}/bin
${INSTALL_SCRIPT} ${PRESTAGE}/scripts/* ${STAGEDIR}${PREFIX}/bin
${INSTALL_DATA} ${DISTDIR}/${DIST_SUBDIR}/TTatlas* ${STAGEDIR}${DATADIR}
${INSTALL_DATA} ${WRKDIR}/CA_EZ_v1.5-July3107/* ${STAGEDIR}${DATADIR}
${INSTALL_MAN} ${WRKDIR}/afni.1 ${STAGEDIR}${MAN1PREFIX}/man/man1
${MKDIR} ${STAGEDIR}${PREFIX}/etc/mri
${INSTALL_SCRIPT} ${WRKDIR}/afni.cshrc ${WRKDIR}/afni.profile \
${STAGEDIR}${PREFIX}/etc/mri
do-install-DOCS-on:
${MKDIR} ${STAGEDIR}${DOCSDIR}
${INSTALL_DATA} ${PRESTAGE}/doc/* ${STAGEDIR}${DOCSDIR}
.include <bsd.port.mk>
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