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# Created by: chuynh@biolateral.com.au
# $FreeBSD$
PORTNAME= tRNAscan-SE
PORTVERSION= 1.23
PORTREVISION= 1
CATEGORIES= biology
MASTER_SITES= ftp://selab.janelia.org/pub/software/tRNAscan-SE/
EXTRACT_SUFX= .tar.Z
MAINTAINER= ports@FreeBSD.org
COMMENT= Improved tool for transfer RNA detection
USES= perl5
MAKE_ARGS= BINDIR="${PREFIX}/bin" \
LIBDIR="${DATADIR}" \
CC="${CC}" \
CFLAGS="${CFLAGS}"
PLIST_FILES+= bin/covels-SE bin/coves-SE bin/eufindtRNA bin/tRNAscan-SE bin/trnascan-1.4 \
man/man1/tRNAscan-SE.1.gz
PORTDATA= *
PORTDOCS= Manual.ps
OPTIONS_DEFINE= DOCS
post-patch:
@${REINPLACE_CMD} -e 's|tRNAscanSE setpaths|tRNAscanSE|g ; \
s|if tRNAscan-SE|if ./tRNAscan-SE|g' ${WRKSRC}/Makefile
do-install:
.for f in covels-SE coves-SE eufindtRNA trnascan-1.4
${INSTALL_PROGRAM} ${WRKSRC}/${f} ${STAGEDIR}${PREFIX}/bin
.endfor
${INSTALL_SCRIPT} ${WRKSRC}/tRNAscan-SE ${STAGEDIR}${PREFIX}/bin
${INSTALL_MAN} ${WRKSRC}/tRNAscan-SE.man ${STAGEDIR}${MANPREFIX}/man/man1/tRNAscan-SE.1
@${MKDIR} ${STAGEDIR}${DATADIR}
.for f in TPCsignal Dsignal *.cm gcode.*
${INSTALL_DATA} ${WRKSRC}/${f} ${STAGEDIR}${DATADIR}
.endfor
@${MKDIR} ${STAGEDIR}${DOCSDIR}
${INSTALL_DATA} ${WRKSRC}/Manual.ps ${STAGEDIR}${DOCSDIR}
.include <bsd.port.mk>
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