path: root/biology/p5-bioperl/pkg-plist

bin/bp_aacomp.pl
bin/bp_biofetch_genbank_proxy.pl
bin/bp_bioflat_index.pl
bin/bp_biogetseq.pl
bin/bp_blast2tree.pl
bin/bp_bulk_load_gff.pl
bin/bp_chaos_plot.pl
bin/bp_classify_hits_kingdom.pl
bin/bp_composite_LD.pl
bin/bp_das_server.pl
bin/bp_dbsplit.pl
bin/bp_download_query_genbank.pl
bin/bp_extract_feature_seq.pl
bin/bp_fast_load_gff.pl
bin/bp_fastam9_to_table.pl
bin/bp_fetch.pl
bin/bp_filter_search.pl
bin/bp_flanks.pl
bin/bp_gccalc.pl
bin/bp_genbank2gff.pl
bin/bp_genbank2gff3.pl
bin/bp_generate_histogram.pl
bin/bp_heterogeneity_test.pl
bin/bp_hivq.pl
bin/bp_hmmer_to_table.pl
bin/bp_index.pl
bin/bp_load_gff.pl
bin/bp_local_taxonomydb_query.pl
bin/bp_make_mrna_protein.pl
bin/bp_mask_by_search.pl
bin/bp_meta_gff.pl
bin/bp_mrtrans.pl
bin/bp_mutate.pl
bin/bp_netinstall.pl
bin/bp_nexus2nh.pl
bin/bp_nrdb.pl
bin/bp_oligo_count.pl
bin/bp_pairwise_kaks.pl
bin/bp_parse_hmmsearch.pl
bin/bp_process_gadfly.pl
bin/bp_process_sgd.pl
bin/bp_process_wormbase.pl
bin/bp_query_entrez_taxa.pl
bin/bp_remote_blast.pl
bin/bp_revtrans-motif.pl
bin/bp_search2BSML.pl
bin/bp_search2alnblocks.pl
bin/bp_search2gff.pl
bin/bp_search2table.pl
bin/bp_search2tribe.pl
bin/bp_seq_length.pl
bin/bp_seqconvert.pl
bin/bp_seqcut.pl
bin/bp_seqfeature_delete.pl
bin/bp_seqfeature_gff3.pl
bin/bp_seqfeature_load.pl
bin/bp_seqpart.pl
bin/bp_seqret.pl
bin/bp_seqretsplit.pl
bin/bp_split_seq.pl
bin/bp_sreformat.pl
bin/bp_taxid4species.pl
bin/bp_taxonomy2tree.pl
bin/bp_translate_seq.pl
bin/bp_tree2pag.pl
bin/bp_unflatten_seq.pl
%%PERL5_MAN3%%/Bio::Align::AlignI.3.gz
%%PERL5_MAN3%%/Bio::Align::DNAStatistics.3.gz
%%PERL5_MAN3%%/Bio::Align::Graphics.3.gz
%%PERL5_MAN3%%/Bio::Align::PairwiseStatistics.3.gz
%%PERL5_MAN3%%/Bio::Align::ProteinStatistics.3.gz
%%PERL5_MAN3%%/Bio::Align::StatisticsI.3.gz
%%PERL5_MAN3%%/Bio::Align::Utilities.3.gz
%%PERL5_MAN3%%/Bio::AlignIO.3.gz
%%PERL5_MAN3%%/Bio::AlignIO::Handler::GenericAlignHandler.3.gz
%%PERL5_MAN3%%/Bio::AlignIO::arp.3.gz
%%PERL5_MAN3%%/Bio::AlignIO::bl2seq.3.gz
%%PERL5_MAN3%%/Bio::AlignIO::clustalw.3.gz
%%PERL5_MAN3%%/Bio::AlignIO::emboss.3.gz
%%PERL5_MAN3%%/Bio::AlignIO::fasta.3.gz
%%PERL5_MAN3%%/Bio::AlignIO::largemultifasta.3.gz
%%PERL5_MAN3%%/Bio::AlignIO::maf.3.gz
%%PERL5_MAN3%%/Bio::AlignIO::mase.3.gz
%%PERL5_MAN3%%/Bio::AlignIO::mega.3.gz
%%PERL5_MAN3%%/Bio::AlignIO::meme.3.gz
%%PERL5_MAN3%%/Bio::AlignIO::metafasta.3.gz
%%PERL5_MAN3%%/Bio::AlignIO::msf.3.gz
%%PERL5_MAN3%%/Bio::AlignIO::nexml.3.gz
%%PERL5_MAN3%%/Bio::AlignIO::nexus.3.gz
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%%PERL5_MAN3%%/Bio::AlignIO::prodom.3.gz
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%%PERL5_MAN3%%/Bio::AlignIO::selex.3.gz
%%PERL5_MAN3%%/Bio::AlignIO::stockholm.3.gz
%%PERL5_MAN3%%/Bio::AlignIO::xmfa.3.gz
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%%PERL5_MAN3%%/Bio::Annotation::DBLink.3.gz
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%%PERL5_MAN3%%/Bio::Annotation::Reference.3.gz
%%PERL5_MAN3%%/Bio::Annotation::Relation.3.gz
%%PERL5_MAN3%%/Bio::Annotation::SimpleValue.3.gz
%%PERL5_MAN3%%/Bio::Annotation::StructuredValue.3.gz
%%PERL5_MAN3%%/Bio::Annotation::TagTree.3.gz
%%PERL5_MAN3%%/Bio::Annotation::Target.3.gz
%%PERL5_MAN3%%/Bio::Annotation::Tree.3.gz
%%PERL5_MAN3%%/Bio::Annotation::TypeManager.3.gz
%%PERL5_MAN3%%/Bio::AnnotationCollectionI.3.gz
%%PERL5_MAN3%%/Bio::AnnotationI.3.gz
%%PERL5_MAN3%%/Bio::Assembly::Contig.3.gz
%%PERL5_MAN3%%/Bio::Assembly::ContigAnalysis.3.gz
%%PERL5_MAN3%%/Bio::Assembly::IO.3.gz
%%PERL5_MAN3%%/Bio::Assembly::IO::ace.3.gz
%%PERL5_MAN3%%/Bio::Assembly::IO::bowtie.3.gz
%%PERL5_MAN3%%/Bio::Assembly::IO::maq.3.gz
%%PERL5_MAN3%%/Bio::Assembly::IO::phrap.3.gz
%%PERL5_MAN3%%/Bio::Assembly::IO::sam.3.gz
%%PERL5_MAN3%%/Bio::Assembly::IO::tigr.3.gz
%%PERL5_MAN3%%/Bio::Assembly::Scaffold.3.gz
%%PERL5_MAN3%%/Bio::Assembly::ScaffoldI.3.gz
%%PERL5_MAN3%%/Bio::Assembly::Singlet.3.gz
%%PERL5_MAN3%%/Bio::Assembly::Tools::ContigSpectrum.3.gz
%%PERL5_MAN3%%/Bio::Cluster::ClusterFactory.3.gz
%%PERL5_MAN3%%/Bio::Cluster::FamilyI.3.gz
%%PERL5_MAN3%%/Bio::Cluster::SequenceFamily.3.gz
%%PERL5_MAN3%%/Bio::Cluster::UniGene.3.gz
%%PERL5_MAN3%%/Bio::Cluster::UniGeneI.3.gz
%%PERL5_MAN3%%/Bio::ClusterI.3.gz
%%PERL5_MAN3%%/Bio::ClusterIO.3.gz
%%PERL5_MAN3%%/Bio::ClusterIO::dbsnp.3.gz
%%PERL5_MAN3%%/Bio::ClusterIO::unigene.3.gz
%%PERL5_MAN3%%/Bio::CodonUsage::IO.3.gz
%%PERL5_MAN3%%/Bio::CodonUsage::Table.3.gz
%%PERL5_MAN3%%/Bio::Coordinate::Chain.3.gz
%%PERL5_MAN3%%/Bio::Coordinate::Collection.3.gz
%%PERL5_MAN3%%/Bio::Coordinate::ExtrapolatingPair.3.gz
%%PERL5_MAN3%%/Bio::Coordinate::GeneMapper.3.gz
%%PERL5_MAN3%%/Bio::Coordinate::Graph.3.gz
%%PERL5_MAN3%%/Bio::Coordinate::MapperI.3.gz
%%PERL5_MAN3%%/Bio::Coordinate::Pair.3.gz
%%PERL5_MAN3%%/Bio::Coordinate::Result.3.gz
%%PERL5_MAN3%%/Bio::Coordinate::Result::Gap.3.gz
%%PERL5_MAN3%%/Bio::Coordinate::Result::Match.3.gz
%%PERL5_MAN3%%/Bio::Coordinate::ResultI.3.gz
%%PERL5_MAN3%%/Bio::Coordinate::Utils.3.gz
%%PERL5_MAN3%%/Bio::DB::Ace.3.gz
%%PERL5_MAN3%%/Bio::DB::BioFetch.3.gz
%%PERL5_MAN3%%/Bio::DB::CUTG.3.gz
%%PERL5_MAN3%%/Bio::DB::DBFetch.3.gz
%%PERL5_MAN3%%/Bio::DB::EMBL.3.gz
%%PERL5_MAN3%%/Bio::DB::EntrezGene.3.gz
%%PERL5_MAN3%%/Bio::DB::Expression.3.gz
%%PERL5_MAN3%%/Bio::DB::Expression::geo.3.gz
%%PERL5_MAN3%%/Bio::DB::Failover.3.gz
%%PERL5_MAN3%%/Bio::DB::Fasta.3.gz
%%PERL5_MAN3%%/Bio::DB::FileCache.3.gz
%%PERL5_MAN3%%/Bio::DB::Flat.3.gz
%%PERL5_MAN3%%/Bio::DB::Flat::BDB.3.gz
%%PERL5_MAN3%%/Bio::DB::Flat::BDB::embl.3.gz
%%PERL5_MAN3%%/Bio::DB::Flat::BDB::fasta.3.gz
%%PERL5_MAN3%%/Bio::DB::Flat::BDB::genbank.3.gz
%%PERL5_MAN3%%/Bio::DB::Flat::BDB::swiss.3.gz
%%PERL5_MAN3%%/Bio::DB::Flat::BinarySearch.3.gz
%%PERL5_MAN3%%/Bio::DB::GFF.3.gz
%%PERL5_MAN3%%/Bio::DB::GFF::Adaptor::ace.3.gz
%%PERL5_MAN3%%/Bio::DB::GFF::Adaptor::berkeleydb.3.gz
%%PERL5_MAN3%%/Bio::DB::GFF::Adaptor::berkeleydb::iterator.3.gz
%%PERL5_MAN3%%/Bio::DB::GFF::Adaptor::biofetch.3.gz
%%PERL5_MAN3%%/Bio::DB::GFF::Adaptor::biofetch_oracle.3.gz
%%PERL5_MAN3%%/Bio::DB::GFF::Adaptor::dbi.3.gz
%%PERL5_MAN3%%/Bio::DB::GFF::Adaptor::dbi::caching_handle.3.gz
%%PERL5_MAN3%%/Bio::DB::GFF::Adaptor::dbi::iterator.3.gz
%%PERL5_MAN3%%/Bio::DB::GFF::Adaptor::dbi::mysql.3.gz
%%PERL5_MAN3%%/Bio::DB::GFF::Adaptor::dbi::mysqlace.3.gz
%%PERL5_MAN3%%/Bio::DB::GFF::Adaptor::dbi::mysqlcmap.3.gz
%%PERL5_MAN3%%/Bio::DB::GFF::Adaptor::dbi::mysqlopt.3.gz
%%PERL5_MAN3%%/Bio::DB::GFF::Adaptor::dbi::oracle.3.gz
%%PERL5_MAN3%%/Bio::DB::GFF::Adaptor::dbi::oracleace.3.gz
%%PERL5_MAN3%%/Bio::DB::GFF::Adaptor::dbi::pg.3.gz
%%PERL5_MAN3%%/Bio::DB::GFF::Adaptor::dbi::pg_fts.3.gz
%%PERL5_MAN3%%/Bio::DB::GFF::Adaptor::memory.3.gz
%%PERL5_MAN3%%/Bio::DB::GFF::Adaptor::memory::feature_serializer.3.gz
%%PERL5_MAN3%%/Bio::DB::GFF::Adaptor::memory::iterator.3.gz
%%PERL5_MAN3%%/Bio::DB::GFF::Aggregator.3.gz
%%PERL5_MAN3%%/Bio::DB::GFF::Aggregator::alignment.3.gz
%%PERL5_MAN3%%/Bio::DB::GFF::Aggregator::clone.3.gz
%%PERL5_MAN3%%/Bio::DB::GFF::Aggregator::coding.3.gz
%%PERL5_MAN3%%/Bio::DB::GFF::Aggregator::gene.3.gz
%%PERL5_MAN3%%/Bio::DB::GFF::Aggregator::match.3.gz
%%PERL5_MAN3%%/Bio::DB::GFF::Aggregator::none.3.gz
%%PERL5_MAN3%%/Bio::DB::GFF::Aggregator::orf.3.gz
%%PERL5_MAN3%%/Bio::DB::GFF::Aggregator::processed_transcript.3.gz
%%PERL5_MAN3%%/Bio::DB::GFF::Aggregator::so_transcript.3.gz
%%PERL5_MAN3%%/Bio::DB::GFF::Aggregator::transcript.3.gz
%%PERL5_MAN3%%/Bio::DB::GFF::Aggregator::ucsc_acembly.3.gz
%%PERL5_MAN3%%/Bio::DB::GFF::Aggregator::ucsc_ensgene.3.gz
%%PERL5_MAN3%%/Bio::DB::GFF::Aggregator::ucsc_genscan.3.gz
%%PERL5_MAN3%%/Bio::DB::GFF::Aggregator::ucsc_refgene.3.gz
%%PERL5_MAN3%%/Bio::DB::GFF::Aggregator::ucsc_sanger22.3.gz
%%PERL5_MAN3%%/Bio::DB::GFF::Aggregator::ucsc_sanger22pseudo.3.gz
%%PERL5_MAN3%%/Bio::DB::GFF::Aggregator::ucsc_softberry.3.gz
%%PERL5_MAN3%%/Bio::DB::GFF::Aggregator::ucsc_twinscan.3.gz
%%PERL5_MAN3%%/Bio::DB::GFF::Aggregator::ucsc_unigene.3.gz
%%PERL5_MAN3%%/Bio::DB::GFF::Featname.3.gz
%%PERL5_MAN3%%/Bio::DB::GFF::Feature.3.gz
%%PERL5_MAN3%%/Bio::DB::GFF::Homol.3.gz
%%PERL5_MAN3%%/Bio::DB::GFF::RelSegment.3.gz
%%PERL5_MAN3%%/Bio::DB::GFF::Segment.3.gz
%%PERL5_MAN3%%/Bio::DB::GFF::Typename.3.gz
%%PERL5_MAN3%%/Bio::DB::GFF::Util::Binning.3.gz
%%PERL5_MAN3%%/Bio::DB::GFF::Util::Rearrange.3.gz
%%PERL5_MAN3%%/Bio::DB::GenBank.3.gz
%%PERL5_MAN3%%/Bio::DB::GenPept.3.gz
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%%PERL5_MAN3%%/Bio::DB::HIV.3.gz
%%PERL5_MAN3%%/Bio::DB::HIV::HIVAnnotProcessor.3.gz
%%PERL5_MAN3%%/Bio::DB::HIV::HIVQueryHelper.3.gz
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%%PERL5_MAN3%%/Bio::DB::IndexedBase.3.gz
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%%PERL5_MAN3%%/Bio::DB::SeqFeature::Store::FeatureFileLoader.3.gz
%%PERL5_MAN3%%/Bio::DB::SeqFeature::Store::GFF2Loader.3.gz
%%PERL5_MAN3%%/Bio::DB::SeqFeature::Store::GFF3Loader.3.gz
%%PERL5_MAN3%%/Bio::DB::SeqFeature::Store::LoadHelper.3.gz
%%PERL5_MAN3%%/Bio::DB::SeqFeature::Store::Loader.3.gz
%%PERL5_MAN3%%/Bio::DB::SeqFeature::Store::bdb.3.gz
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%%PERL5_MAN3%%/Bio::DB::UpdateableSeqI.3.gz
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%%PORTEXAMPLES%%%%EXAMPLESDIR%%/tree/paup2phylip.pl