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# New ports collection Makefile for: nab
# Date created: Sept. 10, 2000
# Whom: M. L. Dodson <bdodson@scms.utmb.edu>
#
# $FreeBSD$
#
PORTNAME= nab
PORTVERSION= 4.6
CATEGORIES= biology
MASTER_SITES= ftp://ftp.scripps.edu/pub/case/ \
http://www.scripps.edu/case/ \
http://siegfried.utmb.edu/bdodson/
MAINTAINER= bdodson@scms.utmb.edu
COMMENT= \
"This is nab (nucleic acid builder), a language for macromolecules"
BUILD_DEPENDS= ucpp:${PORTSDIR}/devel/ucpp
ONLY_FOR_ARCHS= i386
MAKE_ENV+= NABHOME=${WRKSRC} ARCH= PATH=${WRKSRC}/bin:${PATH}
MAN1= nab.1
MANCOMPRESSED= yes
USE_REINPLACE= yes
BINARIES= matextract matmul teLeap tss_main \
matgen nab transform tss_next \
matmerge nab2c tss_init
LIBRARIES= cifparse.a libnab.a libsym.a
INCS= defreal.h nab.h nabcode.h nabtypes.h
.include <bsd.port.pre.mk>
.if ${OSVERSION} >= 502126
BROKEN= "Does not install on FreeBSD >= 5.x"
.endif
post-extract:
@${CP} ${FILESDIR}/config.h ${WRKSRC}
pre-patch:
@${REINPLACE_CMD} -e 's,<malloc.h>,<stdlib.h>,' \
${WRKSRC}/cifparse/cifparse.c
post-patch:
@${RM} -f ${WRKSRC}/examples/program_7.nab.orig
@${RM} -f ${WRKSRC}/examples/program_1.c \
${WRKSRC}/examples/program_1.exe
@${RM} -f ${WRKSRC}/test/1ubq/a.exe
@${RM} -f ${WRKSRC}/test/1ubq/rattle_min.c
@${RM} -f ${WRKSRC}/test/1ubq/runleap.c
@${RM} -f ${WRKSRC}/test/*.exe
@${RM} -f ${WRKSRC}/tleap/utilMakeHelp.exe
@${RM} -f ${WRKSRC}/fd_data/abdna.dat.old
@${RM} -f ${WRKSRC}/reslib/conf.lib.orig
@${RM} -f ${WRKSRC}/reslib/leap/parm94.dat~
@(cd ${WRKSRC}/reslib/leap && \
${FIND} . -type f -print | ${GREP} -v '\./[a-zA-Z0-9]' | \
${XARGS} ${RM} -f)
pre-install:
@cd ${WRKSRC}/src && \
${SETENV} PREFIX=${PREFIX} ${MAKE} beforerealinstall
do-install:
@-${MKDIR} ${PREFIX}/share/nab
@-${MKDIR} ${PREFIX}/share/nab/bin
@-${MKDIR} ${PREFIX}/share/nab/include
@-${MKDIR} ${PREFIX}/share/nab/lib
.if !defined(NOPORTDOCS)
@cd ${WRKSRC} && (${TAR} cf - examples test peptide suppose | \
(cd ${PREFIX}/share/nab; ${TAR} xf -))
@-${MKDIR} ${PREFIX}/share/doc/nab
${INSTALL_MAN} ${WRKSRC}/doc/NAB.pdf ${PREFIX}/share/doc/nab
.endif
@cd ${WRKSRC} && (${TAR} cf - dgdb reslib fd_data | \
(cd ${PREFIX}/share/nab; ${TAR} xf -))
@(cd ${PREFIX}/share; ${CHOWN} -R ${SHAREOWN}:${SHAREGRP} nab; \
${CHMOD} -R ugo+rX-w nab)
@-(cd ${PREFIX}/share/nab && ${LN} -sf ../NDB coords)
${INSTALL_PROGRAM} ${WRKSRC}/bin/* ${PREFIX}/bin
.for f in ${INCS}
${INSTALL_DATA} ${WRKSRC}/include/${f} ${PREFIX}/include
@-(cd ${PREFIX}/share/nab/include && ${LN} -sf ${PREFIX}/include/${f} .)
.endfor
${INSTALL_DATA} ${WRKSRC}/config.h ${PREFIX}/share/nab/include
${INSTALL_DATA} ${WRKSRC}/lib/* ${PREFIX}/lib
@-cd ${WRKSRC}/doc && ${GZIP_CMD} ${MAN1}
${INSTALL_MAN} ${WRKSRC}/doc/nab.1.gz ${PREFIX}/man/man1
.for f in ${BINARIES}
@cd ${PREFIX}/share/nab/bin && ${LN} -sf ../../../bin/${f} .
.endfor
.for f in ${LIBRARIES}
@cd ${PREFIX}/share/nab/lib && ${LN} -sf ../../../lib/${f} .
.endfor
post-install:
@${CAT} ${PKGMESSAGE}
.include <bsd.port.post.mk>
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