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# Created by: Reed A. Cartwright <cartwright@asu.edu>
# $FreeBSD$
PORTNAME= htslib
PORTVERSION= 1.3.1
CATEGORIES= biology devel
MAINTAINER= cartwright@asu.edu
COMMENT= C library for high-throughput sequencing data formats
LICENSE= BSD3CLAUSE MIT
LICENSE_COMB= multi
LICENSE_FILE= ${WRKSRC}/LICENSE
TEST_DEPENDS= bash:shells/bash
USE_GITHUB= yes
GH_ACCOUNT= samtools
USES= autoreconf gmake pathfix perl5 shebangfix
USE_PERL5= test
USE_LDCONFIG= yes
GNU_CONFIGURE= yes
PATHFIX_MAKEFILEIN= Makefile
SHEBANG_FILES= test/compare_sam.pl test/test.pl
OPTIONS_DEFINE= CURL
OPTIONS_DEFAULT= CURL
CURL_DESC= Use libcurl for network file access (HTTPS and S3 support).
CURL_LIB_DEPENDS= libcurl.so:ftp/curl
CURL_CONFIGURE_ENABLE= libcurl
CPPFLAGS+= -I${LOCALBASE}/include
LDFLAGS+= -L${LOCALBASE}/lib
MAKE_ENV= INSTALL_LIB="${INSTALL_LIB}" \
INSTALL_DATA="${INSTALL_DATA}" \
INSTALL_PROGRAM="${INSTALL_PROGRAM}" \
INSTALL_DIR="${MKDIR}"
PLIST_SUB= PORTVERSION="${PORTVERSION}"
TEST_TARGET= test
post-patch:
@${REINPLACE_CMD} -e 's|@PORTVERSION@|${PORTVERSION}|g' ${WRKSRC}/configure.ac
.include <bsd.port.mk>
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