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# Created by: Jason Bacon <bacon4000@gmail.com>
# $FreeBSD$
PORTNAME= bwa
PORTVERSION= 0.7.9a
CATEGORIES= biology
MASTER_SITES= SF/bio-bwa/
MAINTAINER= bacon4000@gmail.com
COMMENT= Burrows-Wheeler sequence aligner
LICENSE= GPLv3
BROKEN_aarch64= fails to compile: error: invalid conversion between vector type and integer type
USES= perl5 shebangfix tar:bzip2
SHEBANG_FILES= qualfa2fq.pl xa2multi.pl
USE_PERL5= run
PLIST_FILES= bin/bwa bin/qualfa2fq.pl bin/xa2multi.pl man/man1/bwa.1.gz
.include <bsd.port.pre.mk>
.if ${ARCH} == amd64 || ${ARCH} == i386
# Avoid #error in emmintrin.h
CFLAGS+= -msse2
.endif
do-install:
${INSTALL_PROGRAM} ${WRKSRC}/bwa ${STAGEDIR}${PREFIX}/bin
${INSTALL_SCRIPT} ${WRKSRC}/*.pl ${STAGEDIR}${PREFIX}/bin
${INSTALL_MAN} ${WRKSRC}/*.1 ${STAGEDIR}${MAN1PREFIX}/man/man1
.include <bsd.port.post.mk>
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