diff options
Diffstat (limited to 'science/gromacs')
| -rw-r--r-- | science/gromacs/Makefile | 29 | ||||
| -rw-r--r-- | science/gromacs/files/patch-src::contrib::Makefile.in | 15 | ||||
| -rw-r--r-- | science/gromacs/files/patch-src::gmxlib::Makefile.in | 22 | ||||
| -rw-r--r-- | science/gromacs/files/patch-src::kernel::Makefile.in | 15 | ||||
| -rw-r--r-- | science/gromacs/files/patch-src::mdlib::Makefile.in | 15 | ||||
| -rw-r--r-- | science/gromacs/files/patch-src::ngmx::Makefile.in | 15 | ||||
| -rw-r--r-- | science/gromacs/files/patch-src::tools::Makefile.in | 15 | ||||
| -rw-r--r-- | science/gromacs/pkg-plist | 947 |
8 files changed, 589 insertions, 484 deletions
diff --git a/science/gromacs/Makefile b/science/gromacs/Makefile index 13176fc..7397bc3 100644 --- a/science/gromacs/Makefile +++ b/science/gromacs/Makefile @@ -7,6 +7,7 @@ PORTNAME= gromacs PORTVERSION= 3.2.1 +PORTREVISION= 1 CATEGORIES= science MASTER_SITES= ftp://ftp.gromacs.org/pub/gromacs/ @@ -17,14 +18,13 @@ COMMENT= Compute molecular dynamics LIB_DEPENDS= fftw:${PORTSDIR}/math/fftw:install .endif .ifdef WITH_MPI -BUILD_DEPENDS= ${LOCALPREFIX}/mpich/bin/mpicc:${PORTSDIR}/net/mpich:install -RUN_DEPENDS= ${LOCALPREFIX}/mpich/bin/mpicc:${PORTSDIR}/net/mpich:install +BUILD_DEPENDS= ${LOCALBASE}/mpich/bin/mpicc:${PORTSDIR}/net/mpich +RUN_DEPENDS= ${LOCALBASE}/mpich/bin/mpicc:${PORTSDIR}/net/mpich .endif -BROKEN= Broken pkg-plist - USE_GMAKE= yes -GNU_CONFIGURE= yes +USE_LIBTOOL_VER= 15 +INSTALLS_SHLIB= yes CONFIGURE_TARGET= --build=${MACHINE_ARCH}-portbld-freebsd${OSREL} CONFIGURE_ENV= CPPFLAGS=-I${LOCALBASE}/include LDFLAGS=-L${LOCALBASE}/lib CONFIGURE_ARGS= --exec-prefix=${PREFIX} @@ -33,9 +33,9 @@ PLIST_SUB= BUILD=${MACHINE_ARCH}-portbld-freebsd${OSREL} .ifndef WITHOUT_FFTW .ifdef WITH_FLOAT -IGNORE= Cannot currently build with fftw and single precision floating point +IGNORE= Cannot currently build with fftw and single precision floating point .elifdef WITH_MPI -IGNORE= Cannot currently build with fftw and mpi support +IGNORE= Cannot currently build with fftw and mpi support .endif .endif @@ -48,20 +48,23 @@ CONFIGURE_ARGS+= --with-x USE_XLIB= yes .endif -.ifdef WITHOUT_FFTW -CONFIGURE_ARGS+= --without-fftw +.ifndef WITH_FLOAT +CONFIGURE_ARGS+= --disable-float --program-suffix= +PLIST_SUB+= SUFFIX_D=_d SUFFIX_DOUBLE=_double +.else +PLIST_SUB+= SUFFIX_D= SUFFIX_DOUBLE= .endif -.ifndef WITHOUT_FLOAT -CONFIGURE_ARGS+= --disable-float +.ifdef WITHOUT_FFTW +CONFIGURE_ARGS+= --without-fftw .endif .ifdef WITH_MPI CONFIGURE_ARGS+= --enable-mpi CONFIGURE_ENV+= MPICC=${PREFIX}/mpich/bin/mpicc -PLIST_SUB+= WITH_MPI= _MPI=_mpi +PLIST_SUB+= WITH_MPI= SUFFIX_MPI=_mpi WITHOUT_MPI="@comment " .else -PLIST_SUB+= WITH_MPI="@comment " SUFFIX_MPI= +PLIST_SUB+= WITH_MPI="@comment " SUFFIX_MPI= WITHOUT_MPI= .endif MAN1= anadock.1 \ diff --git a/science/gromacs/files/patch-src::contrib::Makefile.in b/science/gromacs/files/patch-src::contrib::Makefile.in new file mode 100644 index 0000000..aefac2f --- /dev/null +++ b/science/gromacs/files/patch-src::contrib::Makefile.in @@ -0,0 +1,15 @@ +--- src/contrib/Makefile.in.orig Mon Mar 1 20:49:01 2004 ++++ src/contrib/Makefile.in Thu Dec 9 19:54:56 2004 +@@ -307,10 +307,10 @@ + @AMDEP_TRUE@ ./$(DEPDIR)/sigeps.Po + COMPILE = $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) \ + $(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS) +-LTCOMPILE = $(LIBTOOL) --mode=compile $(CC) $(DEFS) $(DEFAULT_INCLUDES) \ ++LTCOMPILE = $(LIBTOOL) --mode=compile --tag=CC $(CC) $(DEFS) $(DEFAULT_INCLUDES) \ + $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS) + CCLD = $(CC) +-LINK = $(LIBTOOL) --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) \ ++LINK = $(LIBTOOL) --mode=link --tag=CC $(CCLD) $(AM_CFLAGS) $(CFLAGS) \ + $(AM_LDFLAGS) $(LDFLAGS) -o $@ + F77COMPILE = $(F77) $(AM_FFLAGS) $(FFLAGS) + LTF77COMPILE = $(LIBTOOL) --mode=compile $(F77) $(AM_FFLAGS) $(FFLAGS) diff --git a/science/gromacs/files/patch-src::gmxlib::Makefile.in b/science/gromacs/files/patch-src::gmxlib::Makefile.in new file mode 100644 index 0000000..ee1a363 --- /dev/null +++ b/science/gromacs/files/patch-src::gmxlib::Makefile.in @@ -0,0 +1,22 @@ +--- src/gmxlib/Makefile.in.orig Mon Mar 1 20:49:02 2004 ++++ src/gmxlib/Makefile.in Thu Dec 9 00:11:00 2004 +@@ -292,16 +292,16 @@ + @AMDEP_TRUE@ ./$(DEPDIR)/xtcio.Plo ./$(DEPDIR)/xvgr.Plo + COMPILE = $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) \ + $(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS) +-LTCOMPILE = $(LIBTOOL) --mode=compile $(CC) $(DEFS) $(DEFAULT_INCLUDES) \ ++LTCOMPILE = $(LIBTOOL) --mode=compile --tag=CC $(CC) $(DEFS) $(DEFAULT_INCLUDES) \ + $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS) + CCLD = $(CC) +-LINK = $(LIBTOOL) --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) \ ++LINK = $(LIBTOOL) --mode=link --tag=CC $(CCLD) $(AM_CFLAGS) $(CFLAGS) \ + $(AM_LDFLAGS) $(LDFLAGS) -o $@ + F77COMPILE = $(F77) $(AM_FFLAGS) $(FFLAGS) + LTF77COMPILE = $(LIBTOOL) --mode=compile $(F77) $(AM_FFLAGS) $(FFLAGS) + F77LD = $(F77) + CCASCOMPILE = $(CCAS) $(AM_CCASFLAGS) $(CCASFLAGS) +-LTCCASCOMPILE = $(LIBTOOL) --mode=compile $(CCAS) $(AM_CCASFLAGS) \ ++LTCCASCOMPILE = $(LIBTOOL) --mode=compile --tag=CC $(CCAS) $(AM_CCASFLAGS) \ + $(CCASFLAGS) + DIST_SOURCES = $(libgmx@LIBSUFFIX@_la_SOURCES) \ + $(EXTRA_libgmx@LIBSUFFIX@_la_SOURCES) diff --git a/science/gromacs/files/patch-src::kernel::Makefile.in b/science/gromacs/files/patch-src::kernel::Makefile.in new file mode 100644 index 0000000..731760e --- /dev/null +++ b/science/gromacs/files/patch-src::kernel::Makefile.in @@ -0,0 +1,15 @@ +--- src/kernel/Makefile.in.orig Mon Mar 1 20:49:03 2004 ++++ src/kernel/Makefile.in Thu Dec 9 00:33:06 2004 +@@ -367,10 +367,10 @@ + @AMDEP_TRUE@ ./$(DEPDIR)/xutils.Po + COMPILE = $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) \ + $(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS) +-LTCOMPILE = $(LIBTOOL) --mode=compile $(CC) $(DEFS) $(DEFAULT_INCLUDES) \ ++LTCOMPILE = $(LIBTOOL) --mode=compile --tag=CC $(CC) $(DEFS) $(DEFAULT_INCLUDES) \ + $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS) + CCLD = $(CC) +-LINK = $(LIBTOOL) --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) \ ++LINK = $(LIBTOOL) --mode=link --tag=CC $(CCLD) $(AM_CFLAGS) $(CFLAGS) \ + $(AM_LDFLAGS) $(LDFLAGS) -o $@ + DIST_SOURCES = $(ffscan_SOURCES) $(gmxcheck_SOURCES) gmxdump.c \ + $(grompp_SOURCES) luck.c $(mdrun_SOURCES) $(pdb2gmx_SOURCES) \ diff --git a/science/gromacs/files/patch-src::mdlib::Makefile.in b/science/gromacs/files/patch-src::mdlib::Makefile.in new file mode 100644 index 0000000..8f8dff3 --- /dev/null +++ b/science/gromacs/files/patch-src::mdlib::Makefile.in @@ -0,0 +1,15 @@ +--- src/mdlib/Makefile.in.orig Mon Mar 1 20:49:03 2004 ++++ src/mdlib/Makefile.in Thu Dec 9 00:22:03 2004 +@@ -233,10 +233,10 @@ + @AMDEP_TRUE@ ./$(DEPDIR)/vcm.Plo ./$(DEPDIR)/wnblist.Plo + COMPILE = $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) \ + $(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS) +-LTCOMPILE = $(LIBTOOL) --mode=compile $(CC) $(DEFS) $(DEFAULT_INCLUDES) \ ++LTCOMPILE = $(LIBTOOL) --mode=compile --tag=CC $(CC) $(DEFS) $(DEFAULT_INCLUDES) \ + $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS) + CCLD = $(CC) +-LINK = $(LIBTOOL) --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) \ ++LINK = $(LIBTOOL) --mode=link --tag=CC $(CCLD) $(AM_CFLAGS) $(CFLAGS) \ + $(AM_LDFLAGS) $(LDFLAGS) -o $@ + F77COMPILE = $(F77) $(AM_FFLAGS) $(FFLAGS) + LTF77COMPILE = $(LIBTOOL) --mode=compile $(F77) $(AM_FFLAGS) $(FFLAGS) diff --git a/science/gromacs/files/patch-src::ngmx::Makefile.in b/science/gromacs/files/patch-src::ngmx::Makefile.in new file mode 100644 index 0000000..49989cd --- /dev/null +++ b/science/gromacs/files/patch-src::ngmx::Makefile.in @@ -0,0 +1,15 @@ +--- src/ngmx/Makefile.in.orig Mon Mar 1 20:49:04 2004 ++++ src/ngmx/Makefile.in Thu Dec 9 19:53:57 2004 +@@ -272,10 +272,10 @@ + @AMDEP_TRUE@ ./$(DEPDIR)/xrama.Po ./$(DEPDIR)/xutil.Po + COMPILE = $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) \ + $(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS) +-LTCOMPILE = $(LIBTOOL) --mode=compile $(CC) $(DEFS) $(DEFAULT_INCLUDES) \ ++LTCOMPILE = $(LIBTOOL) --mode=compile --tag=CC $(CC) $(DEFS) $(DEFAULT_INCLUDES) \ + $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS) + CCLD = $(CC) +-LINK = $(LIBTOOL) --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) \ ++LINK = $(LIBTOOL) --mode=link --tag=CC $(CCLD) $(AM_CFLAGS) $(CFLAGS) \ + $(AM_LDFLAGS) $(LDFLAGS) -o $@ + DIST_SOURCES = $(dlg_SOURCES) $(gmxlogo_SOURCES) $(highway_SOURCES) \ + $(ngmx_SOURCES) $(scrollw_SOURCES) $(showcol_SOURCES) \ diff --git a/science/gromacs/files/patch-src::tools::Makefile.in b/science/gromacs/files/patch-src::tools::Makefile.in new file mode 100644 index 0000000..7f38409 --- /dev/null +++ b/science/gromacs/files/patch-src::tools::Makefile.in @@ -0,0 +1,15 @@ +--- src/tools/Makefile.in.orig Mon Mar 1 20:49:06 2004 ++++ src/tools/Makefile.in Thu Dec 9 19:35:43 2004 +@@ -744,10 +744,10 @@ + @AMDEP_TRUE@ ./$(DEPDIR)/xpm2ps.Po + COMPILE = $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) \ + $(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS) +-LTCOMPILE = $(LIBTOOL) --mode=compile $(CC) $(DEFS) $(DEFAULT_INCLUDES) \ ++LTCOMPILE = $(LIBTOOL) --mode=compile --tag=CC $(CC) $(DEFS) $(DEFAULT_INCLUDES) \ + $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS) + CCLD = $(CC) +-LINK = $(LIBTOOL) --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) \ ++LINK = $(LIBTOOL) --mode=link --tag=CC $(CCLD) $(AM_CFLAGS) $(CFLAGS) \ + $(AM_LDFLAGS) $(LDFLAGS) -o $@ + DIST_SOURCES = $(libgmxana@LIBSUFFIX@_la_SOURCES) $(anadock_SOURCES) \ + average.c $(cdist_SOURCES) $(disco_SOURCES) do_dssp.c \ diff --git a/science/gromacs/pkg-plist b/science/gromacs/pkg-plist index 8d8b3e0..07fd083 100644 --- a/science/gromacs/pkg-plist +++ b/science/gromacs/pkg-plist @@ -1,69 +1,47 @@ -lib/libgmx%%SUFFIX_MPI%%.la -lib/libgmx%%SUFFIX_MPI%%.a -lib/libmd%%SUFFIX_MPI%%.la -lib/libmd%%SUFFIX_MPI%%.a -lib/libgmxana%%SUFFIX_MPI%%.la -%%WITH_MPI%%lib/libgmxana%%SUFFIX_MPI%%.a -lib/libgmxana.a -%%WITHOUT_X%%bin/ngmx -%%WITHOUT_X%%bin/xrama -%%WITHOUT_X%%bin/highway -bin/grompp -bin/mdrun -bin/tpbconv -bin/pdb2gmx -bin/protonate -bin/luck -bin/gmxdump -bin/gmxcheck -bin/x2top -bin/ffscan +bin/GMXRC +bin/GMXRC.bash +bin/GMXRC.csh +bin/GMXRC.zsh +bin/anadock bin/average +bin/cdist +bin/completion.bash +bin/completion.csh +bin/completion.zsh +bin/disco bin/do_dssp bin/editconf bin/eneconv -bin/genbox -bin/genconf -bin/genpr -bin/make_ndx -bin/mk_angndx -bin/trjcat -bin/trjconv -bin/trjorder -bin/wheel -bin/xpm2ps -bin/genion -bin/anadock -bin/cdist -bin/disco -bin/g_angle -bin/make_edi -bin/g_analyze +bin/ffscan bin/g_anaeig +bin/g_analyze +bin/g_angle bin/g_bond bin/g_bundle bin/g_chi bin/g_cluster +bin/g_clustsize bin/g_confrms bin/g_covar bin/g_density -bin/g_dih bin/g_dielectric +bin/g_dih bin/g_dipoles bin/g_disre bin/g_dist bin/g_dyndom bin/g_enemat bin/g_energy -bin/g_lie bin/g_filter bin/g_gyrate bin/g_h2order bin/g_hbond bin/g_helix +bin/g_lie +bin/g_mdmat bin/g_mindist -bin/g_msd bin/g_morph +bin/g_msd bin/g_nmeig bin/g_nmens bin/g_order @@ -81,473 +59,500 @@ bin/g_sorient bin/g_tcaf bin/g_traj bin/g_velacc -bin/g_clustsize -bin/g_mdmat bin/g_wham -bin/GMXRC -bin/GMXRC.csh -bin/GMXRC.bash -bin/GMXRC.zsh -bin/completion.csh -bin/completion.bash -bin/completion.zsh -share/gromacs/top/ffgmx.itp -share/gromacs/top/ffgmxnb.itp -share/gromacs/top/ffgmxbon.itp -share/gromacs/top/ffgmx.atp -share/gromacs/top/ffgmx.hdb -share/gromacs/top/ffgmx.n2t -share/gromacs/top/ffgmx.rtp -share/gromacs/top/ffgmx-c.tdb -share/gromacs/top/ffgmx-n.tdb -share/gromacs/top/ffgmx2.itp -share/gromacs/top/ffgmx2nb.itp -share/gromacs/top/ffgmx2bon.itp -share/gromacs/top/ffgmx2.atp -share/gromacs/top/ffgmx2.hdb -share/gromacs/top/ffgmx2.rtp -share/gromacs/top/ffgmx2-c.tdb -share/gromacs/top/ffgmx2-n.tdb -share/gromacs/top/ffG43a1.itp -share/gromacs/top/ffG43a1nb.itp -share/gromacs/top/ffG43a1bon.itp -share/gromacs/top/ffG43a1.atp -share/gromacs/top/ffG43a1.hdb -share/gromacs/top/ffG43a1.rtp -share/gromacs/top/ffG43a1-c.tdb -share/gromacs/top/ffG43a1-n.tdb -share/gromacs/top/ffG43a2.itp -share/gromacs/top/ffG43a2nb.itp -share/gromacs/top/ffG43a2bon.itp -share/gromacs/top/ffG43a2.atp -share/gromacs/top/ffG43a2.hdb -share/gromacs/top/ffG43a2.rtp -share/gromacs/top/ffG43a2-c.tdb -share/gromacs/top/ffG43a2-n.tdb -share/gromacs/top/ffG43b1.itp -share/gromacs/top/ffG43b1nb.itp -share/gromacs/top/ffG43b1bon.itp -share/gromacs/top/ffG43b1.atp -share/gromacs/top/ffG43b1.hdb -share/gromacs/top/ffG43b1.rtp -share/gromacs/top/ffG43b1-c.tdb -share/gromacs/top/ffG43b1-n.tdb -share/gromacs/top/ffgmx.ddb -share/gromacs/top/ffgmx2.ddb -share/gromacs/top/ffG43a1.ddb -share/gromacs/top/ffG43a2.ddb -share/gromacs/top/ffG43b1.ddb -share/gromacs/top/ffoplsaa.atp -share/gromacs/top/ffoplsaa.itp -share/gromacs/top/ffoplsaabon.itp -share/gromacs/top/ffoplsaanb.itp -share/gromacs/top/ffoplsaa.hdb -share/gromacs/top/ffoplsaa-n.tdb -share/gromacs/top/ffoplsaa-c.tdb -share/gromacs/top/ffoplsaa.rtp -share/gromacs/top/ffoplsaa.ddb -share/gromacs/top/1mlg.itp -share/gromacs/top/2mlg.itp -share/gromacs/top/benzamide.itp -share/gromacs/top/bondadd.itp -share/gromacs/top/buck.itp -share/gromacs/top/decane.itp -share/gromacs/top/dlg.itp -share/gromacs/top/dmso.itp -share/gromacs/top/fa.itp -share/gromacs/top/ff_dum.itp -share/gromacs/top/flexspc.itp -share/gromacs/top/flexspce.itp -share/gromacs/top/flexwat-ferguson.itp -share/gromacs/top/h2p4o13.itp -share/gromacs/top/h2p8o25.itp -share/gromacs/top/h2po4.itp -share/gromacs/top/ions.itp -share/gromacs/top/methanol.itp -share/gromacs/top/spc.itp -share/gromacs/top/spce.itp -share/gromacs/top/tfe.itp -share/gromacs/top/tip3p.itp -share/gromacs/top/tip4p.itp -share/gromacs/top/urea.itp -share/gromacs/top/dgsolv.dat -share/gromacs/top/dec50.gro -share/gromacs/top/dmso.gro -share/gromacs/top/spc216.gro -share/gromacs/top/tip4p.gro -share/gromacs/top/urea+h2o.gro -share/gromacs/top/aminoacids.dat -share/gromacs/top/atommass.dat -share/gromacs/top/bromacs.dat -share/gromacs/top/ca-shift.dat -share/gromacs/top/cb-shift.dat -share/gromacs/top/co-shift.dat -share/gromacs/top/edissoc.dat -share/gromacs/top/FF.dat -share/gromacs/top/ss.map -share/gromacs/top/gurgle.dat -share/gromacs/top/ha-shift.dat -share/gromacs/top/links.dat -share/gromacs/top/phbres.dat -share/gromacs/top/random.dat -share/gromacs/top/refi_aa.dat -share/gromacs/top/specbond.dat -share/gromacs/top/surface.dat -share/gromacs/top/vdwradii.dat -share/gromacs/top/xlateat.dat -share/gromacs/top/export.dlg -share/gromacs/top/bonds.dlg -share/gromacs/top/ps.m2p -share/gromacs/top/table6-10.xvg -share/gromacs/top/table6-11.xvg -share/gromacs/top/table6-12.xvg -share/gromacs/top/table6-8.xvg -share/gromacs/top/table6-9.xvg -share/gromacs/top/atom_nom.tbl -share/gromacs/top/gromacs.dtd -share/gromacs/top/tip5p.gro -share/gromacs/top/tip5p.itp -share/gromacs/top/sw.itp -share/gromacs/tutor/nmr1/conf.gro -share/gromacs/tutor/nmr1/grompp.mdp -share/gromacs/tutor/nmr1/pep.pdb -share/gromacs/tutor/nmr1/topol.top -share/gromacs/tutor/nmr2/conf.gro -share/gromacs/tutor/nmr2/genconf.gcp -share/gromacs/tutor/nmr2/grompp.mdp -share/gromacs/tutor/nmr2/pep.pdb -share/gromacs/tutor/nmr2/topol.top -share/gromacs/tutor/speptide/em.mdp -share/gromacs/tutor/speptide/full.mdp -share/gromacs/tutor/speptide/pr.mdp -share/gromacs/tutor/speptide/speptide.pdb -share/gromacs/tutor/water/index.ndx -share/gromacs/tutor/water/conf.gro -share/gromacs/tutor/water/spc216.pdb -share/gromacs/tutor/water/grompp.mdp -share/gromacs/tutor/water/topol.top -share/gromacs/tutor/gmxdemo/cpeptide.pdb -share/gromacs/tutor/gmxdemo/demo -share/gromacs/tutor/methanol/index.ndx -share/gromacs/tutor/methanol/conf.gro -share/gromacs/tutor/methanol/methanol.pdb -share/gromacs/tutor/methanol/grompp.mdp -share/gromacs/tutor/methanol/topol.top -share/gromacs/tutor/methanol/methanol.itp -share/gromacs/tutor/mixed/index.ndx -share/gromacs/tutor/mixed/conf.gro -share/gromacs/tutor/mixed/mixed.pdb -share/gromacs/tutor/mixed/grompp.mdp -share/gromacs/tutor/mixed/topol.top -share/gromacs/tutor/cleanit -share/gromacs/template/template.c -share/gromacs/template/README -share/gromacs/template/Makefile.%%BUILD%% -share/gromacs/html/online.html -share/gromacs/html/gmxfaq.html -share/gromacs/html/images/features.gif -share/gromacs/html/images/flow_leftrightup.gif -share/gromacs/html/images/flow_vrule.gif -share/gromacs/html/images/flow_down.gif -share/gromacs/html/images/flow_leftup.gif -share/gromacs/html/images/links.gif -share/gromacs/html/images/articles.gif 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