- Fix pkg_plist and unbreak;

- Define USE_LIBTOOL_VER;
- Bump PORTREVISION.

PR:		ports/74828
Submitted by:	maintainer.

8 files changed, 589 insertions, 484 deletions

diff --git a/science/gromacs/Makefile b/science/gromacs/Makefile
index 13176fc..7397bc3 100644
--- a/science/gromacs/Makefile
+++ b/science/gromacs/Makefile
@@ -7,6 +7,7 @@
 
 PORTNAME=	gromacs
 PORTVERSION=	3.2.1
+PORTREVISION=	1
 CATEGORIES=	science
 MASTER_SITES=	ftp://ftp.gromacs.org/pub/gromacs/
 
@@ -17,14 +18,13 @@ COMMENT=	Compute molecular dynamics
 LIB_DEPENDS=	fftw:${PORTSDIR}/math/fftw:install
 .endif
 .ifdef WITH_MPI
-BUILD_DEPENDS=	${LOCALPREFIX}/mpich/bin/mpicc:${PORTSDIR}/net/mpich:install
-RUN_DEPENDS=	${LOCALPREFIX}/mpich/bin/mpicc:${PORTSDIR}/net/mpich:install
+BUILD_DEPENDS=	${LOCALBASE}/mpich/bin/mpicc:${PORTSDIR}/net/mpich
+RUN_DEPENDS=	${LOCALBASE}/mpich/bin/mpicc:${PORTSDIR}/net/mpich
 .endif
 
-BROKEN=		Broken pkg-plist
-
 USE_GMAKE=	yes
-GNU_CONFIGURE=	yes
+USE_LIBTOOL_VER=	15
+INSTALLS_SHLIB=	yes
 CONFIGURE_TARGET=	--build=${MACHINE_ARCH}-portbld-freebsd${OSREL}
 CONFIGURE_ENV=	CPPFLAGS=-I${LOCALBASE}/include LDFLAGS=-L${LOCALBASE}/lib
 CONFIGURE_ARGS=	--exec-prefix=${PREFIX}
@@ -33,9 +33,9 @@ PLIST_SUB=	BUILD=${MACHINE_ARCH}-portbld-freebsd${OSREL}
 
 .ifndef WITHOUT_FFTW
 .ifdef WITH_FLOAT
-IGNORE= 	Cannot currently build with fftw and single precision floating point
+IGNORE=		Cannot currently build with fftw and single precision floating point
 .elifdef WITH_MPI
-IGNORE= 	Cannot currently build with fftw and mpi support
+IGNORE=		Cannot currently build with fftw and mpi support
 .endif
 .endif
 
@@ -48,20 +48,23 @@ CONFIGURE_ARGS+=	--with-x
 USE_XLIB=	yes
 .endif
 
-.ifdef WITHOUT_FFTW
-CONFIGURE_ARGS+=	--without-fftw
+.ifndef WITH_FLOAT
+CONFIGURE_ARGS+=	--disable-float --program-suffix=
+PLIST_SUB+=	SUFFIX_D=_d SUFFIX_DOUBLE=_double
+.else
+PLIST_SUB+=	SUFFIX_D= SUFFIX_DOUBLE=
 .endif
 
-.ifndef WITHOUT_FLOAT
-CONFIGURE_ARGS+=	--disable-float
+.ifdef WITHOUT_FFTW
+CONFIGURE_ARGS+=	--without-fftw
 .endif
 
 .ifdef WITH_MPI
 CONFIGURE_ARGS+=	--enable-mpi
 CONFIGURE_ENV+=	MPICC=${PREFIX}/mpich/bin/mpicc
-PLIST_SUB+=	WITH_MPI= _MPI=_mpi
+PLIST_SUB+=	WITH_MPI= SUFFIX_MPI=_mpi WITHOUT_MPI="@comment "
 .else
-PLIST_SUB+=	WITH_MPI="@comment " SUFFIX_MPI=
+PLIST_SUB+=	WITH_MPI="@comment " SUFFIX_MPI= WITHOUT_MPI=
 .endif
 
 MAN1=	anadock.1 \
diff --git a/science/gromacs/files/patch-src::contrib::Makefile.in b/science/gromacs/files/patch-src::contrib::Makefile.in
new file mode 100644
index 0000000..aefac2f
--- /dev/null
+++ b/science/gromacs/files/patch-src::contrib::Makefile.in
@@ -0,0 +1,15 @@
+--- src/contrib/Makefile.in.orig	Mon Mar  1 20:49:01 2004
++++ src/contrib/Makefile.in	Thu Dec  9 19:54:56 2004
+@@ -307,10 +307,10 @@
+ @AMDEP_TRUE@	./$(DEPDIR)/sigeps.Po
+ COMPILE = $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) \
+ 	$(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS)
+-LTCOMPILE = $(LIBTOOL) --mode=compile $(CC) $(DEFS) $(DEFAULT_INCLUDES) \
++LTCOMPILE = $(LIBTOOL) --mode=compile --tag=CC $(CC) $(DEFS) $(DEFAULT_INCLUDES) \
+ 	$(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS)
+ CCLD = $(CC)
+-LINK = $(LIBTOOL) --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) \
++LINK = $(LIBTOOL) --mode=link --tag=CC $(CCLD) $(AM_CFLAGS) $(CFLAGS) \
+ 	$(AM_LDFLAGS) $(LDFLAGS) -o $@
+ F77COMPILE = $(F77) $(AM_FFLAGS) $(FFLAGS)
+ LTF77COMPILE = $(LIBTOOL) --mode=compile $(F77) $(AM_FFLAGS) $(FFLAGS)
diff --git a/science/gromacs/files/patch-src::gmxlib::Makefile.in b/science/gromacs/files/patch-src::gmxlib::Makefile.in
new file mode 100644
index 0000000..ee1a363
--- /dev/null
+++ b/science/gromacs/files/patch-src::gmxlib::Makefile.in
@@ -0,0 +1,22 @@
+--- src/gmxlib/Makefile.in.orig	Mon Mar  1 20:49:02 2004
++++ src/gmxlib/Makefile.in	Thu Dec  9 00:11:00 2004
+@@ -292,16 +292,16 @@
+ @AMDEP_TRUE@	./$(DEPDIR)/xtcio.Plo ./$(DEPDIR)/xvgr.Plo
+ COMPILE = $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) \
+ 	$(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS)
+-LTCOMPILE = $(LIBTOOL) --mode=compile $(CC) $(DEFS) $(DEFAULT_INCLUDES) \
++LTCOMPILE = $(LIBTOOL) --mode=compile --tag=CC $(CC) $(DEFS) $(DEFAULT_INCLUDES) \
+ 	$(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS)
+ CCLD = $(CC)
+-LINK = $(LIBTOOL) --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) \
++LINK = $(LIBTOOL) --mode=link  --tag=CC $(CCLD) $(AM_CFLAGS) $(CFLAGS) \
+ 	$(AM_LDFLAGS) $(LDFLAGS) -o $@
+ F77COMPILE = $(F77) $(AM_FFLAGS) $(FFLAGS)
+ LTF77COMPILE = $(LIBTOOL) --mode=compile $(F77) $(AM_FFLAGS) $(FFLAGS)
+ F77LD = $(F77)
+ CCASCOMPILE = $(CCAS) $(AM_CCASFLAGS) $(CCASFLAGS)
+-LTCCASCOMPILE = $(LIBTOOL) --mode=compile $(CCAS) $(AM_CCASFLAGS) \
++LTCCASCOMPILE = $(LIBTOOL) --mode=compile  --tag=CC $(CCAS) $(AM_CCASFLAGS) \
+ 	$(CCASFLAGS)
+ DIST_SOURCES = $(libgmx@LIBSUFFIX@_la_SOURCES) \
+ 	$(EXTRA_libgmx@LIBSUFFIX@_la_SOURCES)
diff --git a/science/gromacs/files/patch-src::kernel::Makefile.in b/science/gromacs/files/patch-src::kernel::Makefile.in
new file mode 100644
index 0000000..731760e
--- /dev/null
+++ b/science/gromacs/files/patch-src::kernel::Makefile.in
@@ -0,0 +1,15 @@
+--- src/kernel/Makefile.in.orig	Mon Mar  1 20:49:03 2004
++++ src/kernel/Makefile.in	Thu Dec  9 00:33:06 2004
+@@ -367,10 +367,10 @@
+ @AMDEP_TRUE@	./$(DEPDIR)/xutils.Po
+ COMPILE = $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) \
+ 	$(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS)
+-LTCOMPILE = $(LIBTOOL) --mode=compile $(CC) $(DEFS) $(DEFAULT_INCLUDES) \
++LTCOMPILE = $(LIBTOOL) --mode=compile --tag=CC $(CC) $(DEFS) $(DEFAULT_INCLUDES) \
+ 	$(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS)
+ CCLD = $(CC)
+-LINK = $(LIBTOOL) --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) \
++LINK = $(LIBTOOL) --mode=link --tag=CC $(CCLD) $(AM_CFLAGS) $(CFLAGS) \
+ 	$(AM_LDFLAGS) $(LDFLAGS) -o $@
+ DIST_SOURCES = $(ffscan_SOURCES) $(gmxcheck_SOURCES) gmxdump.c \
+ 	$(grompp_SOURCES) luck.c $(mdrun_SOURCES) $(pdb2gmx_SOURCES) \
diff --git a/science/gromacs/files/patch-src::mdlib::Makefile.in b/science/gromacs/files/patch-src::mdlib::Makefile.in
new file mode 100644
index 0000000..8f8dff3
--- /dev/null
+++ b/science/gromacs/files/patch-src::mdlib::Makefile.in
@@ -0,0 +1,15 @@
+--- src/mdlib/Makefile.in.orig	Mon Mar  1 20:49:03 2004
++++ src/mdlib/Makefile.in	Thu Dec  9 00:22:03 2004
+@@ -233,10 +233,10 @@
+ @AMDEP_TRUE@	./$(DEPDIR)/vcm.Plo ./$(DEPDIR)/wnblist.Plo
+ COMPILE = $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) \
+ 	$(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS)
+-LTCOMPILE = $(LIBTOOL) --mode=compile $(CC) $(DEFS) $(DEFAULT_INCLUDES) \
++LTCOMPILE = $(LIBTOOL) --mode=compile --tag=CC $(CC) $(DEFS) $(DEFAULT_INCLUDES) \
+ 	$(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS)
+ CCLD = $(CC)
+-LINK = $(LIBTOOL) --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) \
++LINK = $(LIBTOOL) --mode=link --tag=CC $(CCLD) $(AM_CFLAGS) $(CFLAGS) \
+ 	$(AM_LDFLAGS) $(LDFLAGS) -o $@
+ F77COMPILE = $(F77) $(AM_FFLAGS) $(FFLAGS)
+ LTF77COMPILE = $(LIBTOOL) --mode=compile $(F77) $(AM_FFLAGS) $(FFLAGS)
diff --git a/science/gromacs/files/patch-src::ngmx::Makefile.in b/science/gromacs/files/patch-src::ngmx::Makefile.in
new file mode 100644
index 0000000..49989cd
--- /dev/null
+++ b/science/gromacs/files/patch-src::ngmx::Makefile.in
@@ -0,0 +1,15 @@
+--- src/ngmx/Makefile.in.orig	Mon Mar  1 20:49:04 2004
++++ src/ngmx/Makefile.in	Thu Dec  9 19:53:57 2004
+@@ -272,10 +272,10 @@
+ @AMDEP_TRUE@	./$(DEPDIR)/xrama.Po ./$(DEPDIR)/xutil.Po
+ COMPILE = $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) \
+ 	$(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS)
+-LTCOMPILE = $(LIBTOOL) --mode=compile $(CC) $(DEFS) $(DEFAULT_INCLUDES) \
++LTCOMPILE = $(LIBTOOL) --mode=compile --tag=CC $(CC) $(DEFS) $(DEFAULT_INCLUDES) \
+ 	$(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS)
+ CCLD = $(CC)
+-LINK = $(LIBTOOL) --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) \
++LINK = $(LIBTOOL) --mode=link --tag=CC $(CCLD) $(AM_CFLAGS) $(CFLAGS) \
+ 	$(AM_LDFLAGS) $(LDFLAGS) -o $@
+ DIST_SOURCES = $(dlg_SOURCES) $(gmxlogo_SOURCES) $(highway_SOURCES) \
+ 	$(ngmx_SOURCES) $(scrollw_SOURCES) $(showcol_SOURCES) \
diff --git a/science/gromacs/files/patch-src::tools::Makefile.in b/science/gromacs/files/patch-src::tools::Makefile.in
new file mode 100644
index 0000000..7f38409
--- /dev/null
+++ b/science/gromacs/files/patch-src::tools::Makefile.in
@@ -0,0 +1,15 @@
+--- src/tools/Makefile.in.orig	Mon Mar  1 20:49:06 2004
++++ src/tools/Makefile.in	Thu Dec  9 19:35:43 2004
+@@ -744,10 +744,10 @@
+ @AMDEP_TRUE@	./$(DEPDIR)/xpm2ps.Po
+ COMPILE = $(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) \
+ 	$(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS)
+-LTCOMPILE = $(LIBTOOL) --mode=compile $(CC) $(DEFS) $(DEFAULT_INCLUDES) \
++LTCOMPILE = $(LIBTOOL) --mode=compile --tag=CC $(CC) $(DEFS) $(DEFAULT_INCLUDES) \
+ 	$(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(AM_CFLAGS) $(CFLAGS)
+ CCLD = $(CC)
+-LINK = $(LIBTOOL) --mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) \
++LINK = $(LIBTOOL) --mode=link --tag=CC $(CCLD) $(AM_CFLAGS) $(CFLAGS) \
+ 	$(AM_LDFLAGS) $(LDFLAGS) -o $@
+ DIST_SOURCES = $(libgmxana@LIBSUFFIX@_la_SOURCES) $(anadock_SOURCES) \
+ 	average.c $(cdist_SOURCES) $(disco_SOURCES) do_dssp.c \
diff --git a/science/gromacs/pkg-plist b/science/gromacs/pkg-plist
index 8d8b3e0..07fd083 100644
--- a/science/gromacs/pkg-plist
+++ b/science/gromacs/pkg-plist
@@ -1,69 +1,47 @@
-lib/libgmx%%SUFFIX_MPI%%.la
-lib/libgmx%%SUFFIX_MPI%%.a
-lib/libmd%%SUFFIX_MPI%%.la
-lib/libmd%%SUFFIX_MPI%%.a
-lib/libgmxana%%SUFFIX_MPI%%.la
-%%WITH_MPI%%lib/libgmxana%%SUFFIX_MPI%%.a
-lib/libgmxana.a
-%%WITHOUT_X%%bin/ngmx
-%%WITHOUT_X%%bin/xrama
-%%WITHOUT_X%%bin/highway
-bin/grompp
-bin/mdrun
-bin/tpbconv
-bin/pdb2gmx
-bin/protonate
-bin/luck
-bin/gmxdump
-bin/gmxcheck
-bin/x2top
-bin/ffscan
+bin/GMXRC
+bin/GMXRC.bash
+bin/GMXRC.csh
+bin/GMXRC.zsh
+bin/anadock
 bin/average
+bin/cdist
+bin/completion.bash
+bin/completion.csh
+bin/completion.zsh
+bin/disco
 bin/do_dssp
 bin/editconf
 bin/eneconv
-bin/genbox
-bin/genconf
-bin/genpr
-bin/make_ndx
-bin/mk_angndx
-bin/trjcat
-bin/trjconv
-bin/trjorder
-bin/wheel
-bin/xpm2ps
-bin/genion
-bin/anadock
-bin/cdist
-bin/disco
-bin/g_angle
-bin/make_edi
-bin/g_analyze
+bin/ffscan
 bin/g_anaeig
+bin/g_analyze
+bin/g_angle
 bin/g_bond
 bin/g_bundle
 bin/g_chi
 bin/g_cluster
+bin/g_clustsize
 bin/g_confrms
 bin/g_covar
 bin/g_density
-bin/g_dih
 bin/g_dielectric
+bin/g_dih
 bin/g_dipoles
 bin/g_disre
 bin/g_dist
 bin/g_dyndom
 bin/g_enemat
 bin/g_energy
-bin/g_lie
 bin/g_filter
 bin/g_gyrate
 bin/g_h2order
 bin/g_hbond
 bin/g_helix
+bin/g_lie
+bin/g_mdmat
 bin/g_mindist
-bin/g_msd
 bin/g_morph
+bin/g_msd
 bin/g_nmeig
 bin/g_nmens
 bin/g_order
@@ -81,473 +59,500 @@ bin/g_sorient
 bin/g_tcaf
 bin/g_traj
 bin/g_velacc
-bin/g_clustsize
-bin/g_mdmat
 bin/g_wham
-bin/GMXRC
-bin/GMXRC.csh
-bin/GMXRC.bash
-bin/GMXRC.zsh
-bin/completion.csh
-bin/completion.bash
-bin/completion.zsh
-share/gromacs/top/ffgmx.itp
-share/gromacs/top/ffgmxnb.itp
-share/gromacs/top/ffgmxbon.itp
-share/gromacs/top/ffgmx.atp
-share/gromacs/top/ffgmx.hdb
-share/gromacs/top/ffgmx.n2t
-share/gromacs/top/ffgmx.rtp
-share/gromacs/top/ffgmx-c.tdb
-share/gromacs/top/ffgmx-n.tdb
-share/gromacs/top/ffgmx2.itp
-share/gromacs/top/ffgmx2nb.itp
-share/gromacs/top/ffgmx2bon.itp
-share/gromacs/top/ffgmx2.atp
-share/gromacs/top/ffgmx2.hdb
-share/gromacs/top/ffgmx2.rtp
-share/gromacs/top/ffgmx2-c.tdb
-share/gromacs/top/ffgmx2-n.tdb
-share/gromacs/top/ffG43a1.itp
-share/gromacs/top/ffG43a1nb.itp
-share/gromacs/top/ffG43a1bon.itp
-share/gromacs/top/ffG43a1.atp
-share/gromacs/top/ffG43a1.hdb
-share/gromacs/top/ffG43a1.rtp
-share/gromacs/top/ffG43a1-c.tdb
-share/gromacs/top/ffG43a1-n.tdb
-share/gromacs/top/ffG43a2.itp
-share/gromacs/top/ffG43a2nb.itp
-share/gromacs/top/ffG43a2bon.itp
-share/gromacs/top/ffG43a2.atp
-share/gromacs/top/ffG43a2.hdb
-share/gromacs/top/ffG43a2.rtp
-share/gromacs/top/ffG43a2-c.tdb
-share/gromacs/top/ffG43a2-n.tdb
-share/gromacs/top/ffG43b1.itp
-share/gromacs/top/ffG43b1nb.itp
-share/gromacs/top/ffG43b1bon.itp
-share/gromacs/top/ffG43b1.atp
-share/gromacs/top/ffG43b1.hdb
-share/gromacs/top/ffG43b1.rtp
-share/gromacs/top/ffG43b1-c.tdb
-share/gromacs/top/ffG43b1-n.tdb
-share/gromacs/top/ffgmx.ddb
-share/gromacs/top/ffgmx2.ddb
-share/gromacs/top/ffG43a1.ddb
-share/gromacs/top/ffG43a2.ddb
-share/gromacs/top/ffG43b1.ddb
-share/gromacs/top/ffoplsaa.atp
-share/gromacs/top/ffoplsaa.itp
-share/gromacs/top/ffoplsaabon.itp
-share/gromacs/top/ffoplsaanb.itp
-share/gromacs/top/ffoplsaa.hdb
-share/gromacs/top/ffoplsaa-n.tdb
-share/gromacs/top/ffoplsaa-c.tdb
-share/gromacs/top/ffoplsaa.rtp
-share/gromacs/top/ffoplsaa.ddb
-share/gromacs/top/1mlg.itp
-share/gromacs/top/2mlg.itp
-share/gromacs/top/benzamide.itp
-share/gromacs/top/bondadd.itp
-share/gromacs/top/buck.itp
-share/gromacs/top/decane.itp
-share/gromacs/top/dlg.itp
-share/gromacs/top/dmso.itp
-share/gromacs/top/fa.itp
-share/gromacs/top/ff_dum.itp
-share/gromacs/top/flexspc.itp
-share/gromacs/top/flexspce.itp
-share/gromacs/top/flexwat-ferguson.itp
-share/gromacs/top/h2p4o13.itp
-share/gromacs/top/h2p8o25.itp
-share/gromacs/top/h2po4.itp
-share/gromacs/top/ions.itp
-share/gromacs/top/methanol.itp
-share/gromacs/top/spc.itp
-share/gromacs/top/spce.itp
-share/gromacs/top/tfe.itp
-share/gromacs/top/tip3p.itp
-share/gromacs/top/tip4p.itp
-share/gromacs/top/urea.itp
-share/gromacs/top/dgsolv.dat
-share/gromacs/top/dec50.gro
-share/gromacs/top/dmso.gro
-share/gromacs/top/spc216.gro
-share/gromacs/top/tip4p.gro
-share/gromacs/top/urea+h2o.gro
-share/gromacs/top/aminoacids.dat
-share/gromacs/top/atommass.dat
-share/gromacs/top/bromacs.dat
-share/gromacs/top/ca-shift.dat
-share/gromacs/top/cb-shift.dat
-share/gromacs/top/co-shift.dat
-share/gromacs/top/edissoc.dat
-share/gromacs/top/FF.dat
-share/gromacs/top/ss.map
-share/gromacs/top/gurgle.dat
-share/gromacs/top/ha-shift.dat
-share/gromacs/top/links.dat
-share/gromacs/top/phbres.dat
-share/gromacs/top/random.dat
-share/gromacs/top/refi_aa.dat
-share/gromacs/top/specbond.dat
-share/gromacs/top/surface.dat
-share/gromacs/top/vdwradii.dat
-share/gromacs/top/xlateat.dat
-share/gromacs/top/export.dlg
-share/gromacs/top/bonds.dlg
-share/gromacs/top/ps.m2p
-share/gromacs/top/table6-10.xvg
-share/gromacs/top/table6-11.xvg
-share/gromacs/top/table6-12.xvg
-share/gromacs/top/table6-8.xvg
-share/gromacs/top/table6-9.xvg
-share/gromacs/top/atom_nom.tbl
-share/gromacs/top/gromacs.dtd
-share/gromacs/top/tip5p.gro
-share/gromacs/top/tip5p.itp
-share/gromacs/top/sw.itp
-share/gromacs/tutor/nmr1/conf.gro
-share/gromacs/tutor/nmr1/grompp.mdp
-share/gromacs/tutor/nmr1/pep.pdb
-share/gromacs/tutor/nmr1/topol.top
-share/gromacs/tutor/nmr2/conf.gro
-share/gromacs/tutor/nmr2/genconf.gcp
-share/gromacs/tutor/nmr2/grompp.mdp
-share/gromacs/tutor/nmr2/pep.pdb
-share/gromacs/tutor/nmr2/topol.top
-share/gromacs/tutor/speptide/em.mdp
-share/gromacs/tutor/speptide/full.mdp
-share/gromacs/tutor/speptide/pr.mdp
-share/gromacs/tutor/speptide/speptide.pdb
-share/gromacs/tutor/water/index.ndx
-share/gromacs/tutor/water/conf.gro
-share/gromacs/tutor/water/spc216.pdb
-share/gromacs/tutor/water/grompp.mdp
-share/gromacs/tutor/water/topol.top
-share/gromacs/tutor/gmxdemo/cpeptide.pdb
-share/gromacs/tutor/gmxdemo/demo
-share/gromacs/tutor/methanol/index.ndx
-share/gromacs/tutor/methanol/conf.gro
-share/gromacs/tutor/methanol/methanol.pdb
-share/gromacs/tutor/methanol/grompp.mdp
-share/gromacs/tutor/methanol/topol.top
-share/gromacs/tutor/methanol/methanol.itp
-share/gromacs/tutor/mixed/index.ndx
-share/gromacs/tutor/mixed/conf.gro
-share/gromacs/tutor/mixed/mixed.pdb
-share/gromacs/tutor/mixed/grompp.mdp
-share/gromacs/tutor/mixed/topol.top
-share/gromacs/tutor/cleanit
-share/gromacs/template/template.c
-share/gromacs/template/README
-share/gromacs/template/Makefile.%%BUILD%%
-share/gromacs/html/online.html
-share/gromacs/html/gmxfaq.html
-share/gromacs/html/images/features.gif
-share/gromacs/html/images/flow_leftrightup.gif
-share/gromacs/html/images/flow_vrule.gif
-share/gromacs/html/images/flow_down.gif
-share/gromacs/html/images/flow_leftup.gif
-share/gromacs/html/images/links.gif
-share/gromacs/html/images/articles.gif
-share/gromacs/html/images/flow_downleft.gif
-share/gromacs/html/images/flow_right+left.gif
-share/gromacs/html/images/mail.gif
-share/gromacs/html/images/bench.gif
-share/gromacs/html/images/flow_hline.gif
-share/gromacs/html/images/flow_right.gif
-share/gromacs/html/images/manual.gif
-share/gromacs/html/images/charts_down.gif
-share/gromacs/html/images/flow_left.gif
-share/gromacs/html/images/flow_rightleftdown.gif
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-share/gromacs/html/images/1ctf-0.2.jpg
-share/gromacs/html/images/1ctf-0.5.jpg
-share/gromacs/html/images/1ctf-1.jpg
-share/gromacs/html/images/1ctf-4.jpg
-share/gromacs/html/images/1ctf-10.jpg
-share/gromacs/html/online/dat.html
-share/gromacs/html/online/g_disre.html
-share/gromacs/html/online/g_sorient.html
-share/gromacs/html/online/ndx.html
-share/gromacs/html/online/dlg.html
-share/gromacs/html/online/g_dist.html
-share/gromacs/html/online/g_tcaf.html
-share/gromacs/html/online/ngmx.html
-share/gromacs/html/online/do_dssp.html
-share/gromacs/html/online/g_dyndom.html
-share/gromacs/html/online/g_traj.html
-share/gromacs/html/online/edi.html
-share/gromacs/html/online/g_enemat.html
-share/gromacs/html/online/g_velacc.html
-share/gromacs/html/online/options.html
-share/gromacs/html/online/editconf.html
-share/gromacs/html/online/g_energy.html
-share/gromacs/html/online/genbox.html
-share/gromacs/html/online/out.html
-share/gromacs/html/online/edo.html
-share/gromacs/html/online/g_gyrate.html
-share/gromacs/html/online/genconf.html
-share/gromacs/html/online/pdb.html
-share/gromacs/html/online/edr.html
-share/gromacs/html/online/g_h2order.html
-share/gromacs/html/online/genion.html
-share/gromacs/html/online/pdb2gmx.html
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-share/gromacs/html/online/g_hbond.html
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-share/gromacs/html/online/protonate.html
-share/gromacs/html/online/eneconv.html
-share/gromacs/html/online/g_helix.html
-share/gromacs/html/online/getting_started.html
-share/gromacs/html/online/rtp.html
-share/gromacs/html/online/eps.html
-share/gromacs/html/online/g_lie.html
-share/gromacs/html/online/gmxcheck.html
-share/gromacs/html/online/tex.html
-share/gromacs/html/online/files.html
-share/gromacs/html/online/g_mdmat.html
-share/gromacs/html/online/gmxdump.html
-share/gromacs/html/online/top.html
-share/gromacs/html/online/flow.html
-share/gromacs/html/online/g_mindist.html
-share/gromacs/html/online/gro.html
-share/gromacs/html/online/tpa.html
-share/gromacs/html/online/g87.html
-share/gromacs/html/online/g_morph.html
-share/gromacs/html/online/grompp.html
-share/gromacs/html/online/tpb.html
-share/gromacs/html/online/g96.html
-share/gromacs/html/online/g_msd.html
-share/gromacs/html/online/hat.html
-share/gromacs/html/online/tpbconv.html
-share/gromacs/html/online/g_anaeig.html
-share/gromacs/html/online/g_nmeig.html
-share/gromacs/html/online/highway.html
-share/gromacs/html/online/tpr.html
-share/gromacs/html/online/g_analyze.html
-share/gromacs/html/online/g_nmens.html
-share/gromacs/html/online/include_bot.html
-share/gromacs/html/online/trj.html
-share/gromacs/html/online/g_angle.html
-share/gromacs/html/online/g_order.html
-share/gromacs/html/online/include_top.html
-share/gromacs/html/online/trjcat.html
-share/gromacs/html/online/g_bond.html
-share/gromacs/html/online/g_potential.html
-share/gromacs/html/online/itp.html
-share/gromacs/html/online/trjconv.html
-share/gromacs/html/online/g_bundle.html
-share/gromacs/html/online/g_rama.html
-share/gromacs/html/online/log.html
-share/gromacs/html/online/trjorder.html
-share/gromacs/html/online/g_chi.html
-share/gromacs/html/online/g_rdf.html
-share/gromacs/html/online/m2p.html
-share/gromacs/html/online/trr.html
-share/gromacs/html/online/g_cluster.html
-share/gromacs/html/online/g_rms.html
-share/gromacs/html/online/make_ndx.html
-share/gromacs/html/online/wheel.html
-share/gromacs/html/online/g_confrms.html
-share/gromacs/html/online/g_rmsdist.html
-share/gromacs/html/online/map.html
-share/gromacs/html/online/x2top.html
-share/gromacs/html/online/g_covar.html
-share/gromacs/html/online/g_rmsf.html
-share/gromacs/html/online/mdp.html
-share/gromacs/html/online/xpm.html
-share/gromacs/html/online/g_density.html
-share/gromacs/html/online/g_rotacf.html
-share/gromacs/html/online/mdp_opt.html
-share/gromacs/html/online/xpm2ps.html
-share/gromacs/html/online/g_dielectric.html
-share/gromacs/html/online/g_saltbr.html
-share/gromacs/html/online/mdrun.html
-share/gromacs/html/online/xrama.html
-share/gromacs/html/online/g_dih.html
-share/gromacs/html/online/g_sas.html
-share/gromacs/html/online/mk_angndx.html
-share/gromacs/html/online/xtc.html
-share/gromacs/html/online/g_dipoles.html
-share/gromacs/html/online/g_sgangle.html
-share/gromacs/html/online/mtx.html
-share/gromacs/html/online/xvg.html
-share/gromacs/html/online/style.css
-share/gromacs/html/online/water.html
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-share/gromacs/html/online/speptide.html
-share/gromacs/html/online/yourown.html
-share/gromacs/html/online/methanol.html
-share/gromacs/html/online/mixed.html
-share/gromacs/html/online/protunf.html
+bin/genbox
+bin/genconf
+bin/genion
+bin/genpr
+bin/gmxcheck
+bin/gmxdump
+bin/grompp
+%%WITHOUT_X%%bin/highway
+bin/luck
+bin/make_edi
+bin/make_ndx
+bin/mdrun
+bin/mk_angndx
+%%WITHOUT_X%%bin/ngmx
+bin/pdb2gmx
+bin/protonate
+bin/tpbconv
+bin/trjcat
+bin/trjconv
+bin/trjorder
+bin/wheel
+bin/x2top
+bin/xpm2ps
+%%WITHOUT_X%%bin/xrama
 include/gromacs/3dview.h
-include/gromacs/do_md.h
-include/gromacs/invblock.h
-include/gromacs/nrjac.h
-include/gromacs/tpxio.h
 include/gromacs/assert.h
-include/gromacs/dihre.h
-include/gromacs/nrnb.h
-include/gromacs/sheader.h
-include/gromacs/transfer.h
 include/gromacs/atomprop.h
-include/gromacs/dummies.h
-include/gromacs/ns.h
-include/gromacs/shift.h
-include/gromacs/trnio.h
 include/gromacs/axp_asm.h
+include/gromacs/block_tx.h
+include/gromacs/bondf.h
+include/gromacs/calcgrid.h
+include/gromacs/calch.h
+include/gromacs/calcmu.h
+include/gromacs/callf77.h
+include/gromacs/confio.h
+include/gromacs/constr.h
+include/gromacs/copyrite.h
+include/gromacs/detectcpu.h
+include/gromacs/dihre.h
+include/gromacs/disre.h
+include/gromacs/do_fit.h
+include/gromacs/do_md.h
+include/gromacs/dummies.h
 include/gromacs/ebin.h
-include/gromacs/macros.h
-include/gromacs/nsb.h
-include/gromacs/shift_util.h
-include/gromacs/txtdump.h
 include/gromacs/edsam.h
-include/gromacs/magic.h
-include/gromacs/nsgrid.h
-include/gromacs/typedefs.h
-include/gromacs/block_tx.h
 include/gromacs/enxio.h
-include/gromacs/main.h
-include/gromacs/pbc.h
-include/gromacs/smalloc.h
-include/gromacs/update.h
-include/gromacs/bondf.h
 include/gromacs/ewald.h
-include/gromacs/maths.h
-include/gromacs/pdbio.h
-include/gromacs/sortwater.h
-include/gromacs/utils.h
 include/gromacs/ewald_util.h
-include/gromacs/matio.h
-include/gromacs/pdebug.h
-include/gromacs/split.h
-include/gromacs/vcm.h
-include/gromacs/calcgrid.h
 include/gromacs/fatal.h
-include/gromacs/mdatoms.h
-include/gromacs/physics.h
-include/gromacs/vec.h
-include/gromacs/calch.h
 include/gromacs/ffscanf.h
-include/gromacs/mdebin.h
-include/gromacs/pme.h
-include/gromacs/statusio.h
-include/gromacs/viewit.h
-include/gromacs/calcmu.h
 include/gromacs/fftgrid.h
-include/gromacs/mdrun.h
-include/gromacs/pppm.h
-include/gromacs/statutil.h
-include/gromacs/callf77.h
 include/gromacs/fftw_wrapper.h
-include/gromacs/gmx_ana.h
-include/gromacs/princ.h
-include/gromacs/wgms.h
-include/gromacs/gmx_system_xdr.h
 include/gromacs/filenm.h
-include/gromacs/pull.h
-include/gromacs/rdgroup.h
-include/gromacs/strdb.h
-include/gromacs/wman.h
 include/gromacs/force.h
-include/gromacs/string2.h
-include/gromacs/writeps.h
-include/gromacs/gmxcomplex.h
 include/gromacs/futil.h
-include/gromacs/metacode.h
-include/gromacs/random.h
-include/gromacs/struc2.h
-include/gromacs/x86_3dnow.h
 include/gromacs/gbutil.h
+include/gromacs/gmx_ana.h
 include/gromacs/gmx_random.h
-include/gromacs/rbin.h
-include/gromacs/detectcpu.h
-include/gromacs/tgroup.h
-include/gromacs/mshift.h
-include/gromacs/symtab.h
-include/gromacs/x86_sse.h
-include/gromacs/confio.h
+include/gromacs/gmx_system_xdr.h
+include/gromacs/gmxcomplex.h
 include/gromacs/gmxfio.h
-include/gromacs/xdrf.h
-include/gromacs/constr.h
 include/gromacs/grompp.h
-include/gromacs/names.h
-include/gromacs/readcomp.h
-include/gromacs/xtcio.h
-include/gromacs/copyrite.h
 include/gromacs/gstat.h
-include/gromacs/network.h
-include/gromacs/readinp.h
-include/gromacs/sysstuff.h
-include/gromacs/xvgr.h
 include/gromacs/index.h
-include/gromacs/mvdata.h
-include/gromacs/disre.h
-include/gromacs/orires.h
-include/gromacs/x86_sse2.h
 include/gromacs/init.h
+include/gromacs/invblock.h
+include/gromacs/macros.h
+include/gromacs/magic.h
+include/gromacs/main.h
+include/gromacs/maths.h
+include/gromacs/matio.h
+include/gromacs/mdatoms.h
+include/gromacs/mdebin.h
+include/gromacs/mdrun.h
+include/gromacs/metacode.h
+include/gromacs/mshift.h
+include/gromacs/mvdata.h
+include/gromacs/names.h
+include/gromacs/network.h
 include/gromacs/nr.h
-include/gromacs/reorder.h
-include/gromacs/tags.h
-include/gromacs/do_fit.h
 include/gromacs/nrama.h
-include/gromacs/rmpbc.h
+include/gromacs/nrjac.h
+include/gromacs/nrnb.h
+include/gromacs/ns.h
+include/gromacs/nsb.h
+include/gromacs/nsgrid.h
+include/gromacs/orires.h
+include/gromacs/pbc.h
+include/gromacs/pdbio.h
+include/gromacs/pdebug.h
+include/gromacs/physics.h
+include/gromacs/pme.h
 include/gromacs/ppc_altivec.h
+include/gromacs/pppm.h
+include/gromacs/princ.h
+include/gromacs/pull.h
+include/gromacs/random.h
+include/gromacs/rbin.h
+include/gromacs/rdgroup.h
+include/gromacs/readcomp.h
+include/gromacs/readinp.h
+include/gromacs/reorder.h
+include/gromacs/rmpbc.h
+include/gromacs/sheader.h
+include/gromacs/shift.h
+include/gromacs/shift_util.h
+include/gromacs/smalloc.h
+include/gromacs/sortwater.h
+include/gromacs/split.h
+include/gromacs/statusio.h
+include/gromacs/statutil.h
+include/gromacs/strdb.h
+include/gromacs/string2.h
+include/gromacs/struc2.h
+include/gromacs/symtab.h
+include/gromacs/sysstuff.h
+include/gromacs/tags.h
+include/gromacs/tgroup.h
+include/gromacs/tpxio.h
+include/gromacs/transfer.h
+include/gromacs/trnio.h
+include/gromacs/txtdump.h
+include/gromacs/typedefs.h
 include/gromacs/types/atoms.h
-include/gromacs/types/edsams.h
-include/gromacs/types/forcerec.h
-include/gromacs/types/ifunc.h
-include/gromacs/types/mdatom.h
-include/gromacs/types/nsborder.h
-include/gromacs/types/simple.h
 include/gromacs/types/block.h
-include/gromacs/types/energy.h
-include/gromacs/types/graph.h
-include/gromacs/types/inputrec.h
-include/gromacs/types/nblist.h
-include/gromacs/types/nsgrid.h
-include/gromacs/types/symtab.h
 include/gromacs/types/commrec.h
+include/gromacs/types/edsams.h
+include/gromacs/types/energy.h
 include/gromacs/types/enums.h
-include/gromacs/types/group.h
-include/gromacs/types/ishift.h
-include/gromacs/types/nbslist.h
-include/gromacs/types/parm.h
-include/gromacs/types/topology.h
 include/gromacs/types/fcdata.h
 include/gromacs/types/filenm.h
+include/gromacs/types/forcerec.h
+include/gromacs/types/graph.h
+include/gromacs/types/group.h
 include/gromacs/types/idef.h
+include/gromacs/types/ifunc.h
+include/gromacs/types/inputrec.h
+include/gromacs/types/ishift.h
 include/gromacs/types/matrix.h
+include/gromacs/types/mdatom.h
+include/gromacs/types/nblist.h
+include/gromacs/types/nbslist.h
 include/gromacs/types/nrnb.h
-include/gromacs/types/trx.h
+include/gromacs/types/nsborder.h
+include/gromacs/types/nsgrid.h
+include/gromacs/types/parm.h
+include/gromacs/types/simple.h
 include/gromacs/types/state.h
-@dirrm share/gromacs/tutor/water
-@dirrm share/gromacs/tutor/speptide
-@dirrm share/gromacs/tutor/nmr2
-@dirrm share/gromacs/tutor/nmr1
-@dirrm share/gromacs/tutor/mixed
-@dirrm share/gromacs/tutor/methanol
-@dirrm share/gromacs/tutor/gmxdemo
-@dirrm share/gromacs/tutor
-@dirrm share/gromacs/top
-@dirrm share/gromacs/template
-@dirrm share/gromacs/html/online
-@dirrm share/gromacs/html/images
-@dirrm share/gromacs/html
-@dirrm share/gromacs
+include/gromacs/types/symtab.h
+include/gromacs/types/topology.h
+include/gromacs/types/trx.h
+include/gromacs/update.h
+include/gromacs/utils.h
+include/gromacs/vcm.h
+include/gromacs/vec.h
+include/gromacs/viewit.h
+include/gromacs/wgms.h
+include/gromacs/wman.h
+include/gromacs/writeps.h
+include/gromacs/x86_3dnow.h
+include/gromacs/x86_sse.h
+include/gromacs/x86_sse2.h
+include/gromacs/xdrf.h
+include/gromacs/xtcio.h
+include/gromacs/xvgr.h
+lib/libgmx%%SUFFIX_MPI%%%%SUFFIX_D%%.a
+lib/libgmx%%SUFFIX_MPI%%%%SUFFIX_D%%.so
+lib/libgmx%%SUFFIX_MPI%%%%SUFFIX_D%%.so.3
+lib/libgmxana%%SUFFIX_D%%.a
+lib/libgmxana%%SUFFIX_D%%.so
+%%WITHOUT_MPI%%lib/libgmxana%%SUFFIX_D%%.so.3
+%%WITH_MPI%%lib/libgmxana%%SUFFIX_MPI%%%%SUFFIX_D%%.a
+%%WITH_MPI%%lib/libgmxana%%SUFFIX_MPI%%%%SUFFIX_D%%.so
+%%WITH_MPI%%lib/libgmxana%%SUFFIX_MPI%%%%SUFFIX_D%%.so.3
+lib/libmd%%SUFFIX_MPI%%%%SUFFIX_D%%.a
+lib/libmd%%SUFFIX_MPI%%%%SUFFIX_D%%.so
+lib/libmd%%SUFFIX_MPI%%%%SUFFIX_D%%.so.3
+%%DATADIR%%/html/gmxfaq.html
+%%DATADIR%%/html/images/1ctf-0.2.jpg
+%%DATADIR%%/html/images/1ctf-0.5.jpg
+%%DATADIR%%/html/images/1ctf-0.jpg
+%%DATADIR%%/html/images/1ctf-1.jpg
+%%DATADIR%%/html/images/1ctf-10.jpg
+%%DATADIR%%/html/images/1ctf-4.jpg
+%%DATADIR%%/html/images/articles.gif
+%%DATADIR%%/html/images/bench.gif
+%%DATADIR%%/html/images/charts_down.gif
+%%DATADIR%%/html/images/charts_up.gif
+%%DATADIR%%/html/images/faq.gif
+%%DATADIR%%/html/images/features.gif
+%%DATADIR%%/html/images/flow_down.gif
+%%DATADIR%%/html/images/flow_downleft.gif
+%%DATADIR%%/html/images/flow_hline.gif
+%%DATADIR%%/html/images/flow_left.gif
+%%DATADIR%%/html/images/flow_leftright.gif
+%%DATADIR%%/html/images/flow_leftrightdown.gif
+%%DATADIR%%/html/images/flow_leftrightup.gif
+%%DATADIR%%/html/images/flow_leftup.gif
+%%DATADIR%%/html/images/flow_right+left.gif
+%%DATADIR%%/html/images/flow_right.gif
+%%DATADIR%%/html/images/flow_rightleftdown.gif
+%%DATADIR%%/html/images/flow_uprightleft.gif
+%%DATADIR%%/html/images/flow_vline.gif
+%%DATADIR%%/html/images/flow_vrule.gif
+%%DATADIR%%/html/images/gmxlogo_small.jpg
+%%DATADIR%%/html/images/links.gif
+%%DATADIR%%/html/images/mail.gif
+%%DATADIR%%/html/images/manual.gif
+%%DATADIR%%/html/images/plotje.gif
+%%DATADIR%%/html/images/software.gif
+%%DATADIR%%/html/images/topologies.gif
+%%DATADIR%%/html/images/xvgr.gif
+%%DATADIR%%/html/online.html
+%%DATADIR%%/html/online/dat.html
+%%DATADIR%%/html/online/dlg.html
+%%DATADIR%%/html/online/do_dssp.html
+%%DATADIR%%/html/online/edi.html
+%%DATADIR%%/html/online/editconf.html
+%%DATADIR%%/html/online/edo.html
+%%DATADIR%%/html/online/edr.html
+%%DATADIR%%/html/online/ene.html
+%%DATADIR%%/html/online/eneconv.html
+%%DATADIR%%/html/online/eps.html
+%%DATADIR%%/html/online/files.html
+%%DATADIR%%/html/online/flow.html
+%%DATADIR%%/html/online/g87.html
+%%DATADIR%%/html/online/g96.html
+%%DATADIR%%/html/online/g_anaeig.html
+%%DATADIR%%/html/online/g_analyze.html
+%%DATADIR%%/html/online/g_angle.html
+%%DATADIR%%/html/online/g_bond.html
+%%DATADIR%%/html/online/g_bundle.html
+%%DATADIR%%/html/online/g_chi.html
+%%DATADIR%%/html/online/g_cluster.html
+%%DATADIR%%/html/online/g_confrms.html
+%%DATADIR%%/html/online/g_covar.html
+%%DATADIR%%/html/online/g_density.html
+%%DATADIR%%/html/online/g_dielectric.html
+%%DATADIR%%/html/online/g_dih.html
+%%DATADIR%%/html/online/g_dipoles.html
+%%DATADIR%%/html/online/g_disre.html
+%%DATADIR%%/html/online/g_dist.html
+%%DATADIR%%/html/online/g_dyndom.html
+%%DATADIR%%/html/online/g_enemat.html
+%%DATADIR%%/html/online/g_energy.html
+%%DATADIR%%/html/online/g_gyrate.html
+%%DATADIR%%/html/online/g_h2order.html
+%%DATADIR%%/html/online/g_hbond.html
+%%DATADIR%%/html/online/g_helix.html
+%%DATADIR%%/html/online/g_lie.html
+%%DATADIR%%/html/online/g_mdmat.html
+%%DATADIR%%/html/online/g_mindist.html
+%%DATADIR%%/html/online/g_morph.html
+%%DATADIR%%/html/online/g_msd.html
+%%DATADIR%%/html/online/g_nmeig.html
+%%DATADIR%%/html/online/g_nmens.html
+%%DATADIR%%/html/online/g_order.html
+%%DATADIR%%/html/online/g_potential.html
+%%DATADIR%%/html/online/g_rama.html
+%%DATADIR%%/html/online/g_rdf.html
+%%DATADIR%%/html/online/g_rms.html
+%%DATADIR%%/html/online/g_rmsdist.html
+%%DATADIR%%/html/online/g_rmsf.html
+%%DATADIR%%/html/online/g_rotacf.html
+%%DATADIR%%/html/online/g_saltbr.html
+%%DATADIR%%/html/online/g_sas.html
+%%DATADIR%%/html/online/g_sgangle.html
+%%DATADIR%%/html/online/g_sorient.html
+%%DATADIR%%/html/online/g_tcaf.html
+%%DATADIR%%/html/online/g_traj.html
+%%DATADIR%%/html/online/g_velacc.html
+%%DATADIR%%/html/online/genbox.html
+%%DATADIR%%/html/online/genconf.html
+%%DATADIR%%/html/online/genion.html
+%%DATADIR%%/html/online/genpr.html
+%%DATADIR%%/html/online/getting_started.html
+%%DATADIR%%/html/online/gmxcheck.html
+%%DATADIR%%/html/online/gmxdemo.html
+%%DATADIR%%/html/online/gmxdump.html
+%%DATADIR%%/html/online/gro.html
+%%DATADIR%%/html/online/grompp.html
+%%DATADIR%%/html/online/hat.html
+%%DATADIR%%/html/online/highway.html
+%%DATADIR%%/html/online/include_bot.html
+%%DATADIR%%/html/online/include_top.html
+%%DATADIR%%/html/online/itp.html
+%%DATADIR%%/html/online/log.html
+%%DATADIR%%/html/online/m2p.html
+%%DATADIR%%/html/online/make_ndx.html
+%%DATADIR%%/html/online/map.html
+%%DATADIR%%/html/online/mdp.html
+%%DATADIR%%/html/online/mdp_opt.html
+%%DATADIR%%/html/online/mdrun.html
+%%DATADIR%%/html/online/methanol.html
+%%DATADIR%%/html/online/mixed.html
+%%DATADIR%%/html/online/mk_angndx.html
+%%DATADIR%%/html/online/mtx.html
+%%DATADIR%%/html/online/ndx.html
+%%DATADIR%%/html/online/ngmx.html
+%%DATADIR%%/html/online/options.html
+%%DATADIR%%/html/online/out.html
+%%DATADIR%%/html/online/pdb.html
+%%DATADIR%%/html/online/pdb2gmx.html
+%%DATADIR%%/html/online/protonate.html
+%%DATADIR%%/html/online/protunf.html
+%%DATADIR%%/html/online/rtp.html
+%%DATADIR%%/html/online/speptide.html
+%%DATADIR%%/html/online/style.css
+%%DATADIR%%/html/online/tex.html
+%%DATADIR%%/html/online/top.html
+%%DATADIR%%/html/online/tpa.html
+%%DATADIR%%/html/online/tpb.html
+%%DATADIR%%/html/online/tpbconv.html
+%%DATADIR%%/html/online/tpr.html
+%%DATADIR%%/html/online/trj.html
+%%DATADIR%%/html/online/trjcat.html
+%%DATADIR%%/html/online/trjconv.html
+%%DATADIR%%/html/online/trjorder.html
+%%DATADIR%%/html/online/trr.html
+%%DATADIR%%/html/online/water.html
+%%DATADIR%%/html/online/wheel.html
+%%DATADIR%%/html/online/x2top.html
+%%DATADIR%%/html/online/xpm.html
+%%DATADIR%%/html/online/xpm2ps.html
+%%DATADIR%%/html/online/xrama.html
+%%DATADIR%%/html/online/xtc.html
+%%DATADIR%%/html/online/xvg.html
+%%DATADIR%%/html/online/yourown.html
+%%DATADIR%%/template/Makefile.%%BUILD%%%%SUFFIX_DOUBLE%%
+%%DATADIR%%/template/README
+%%DATADIR%%/template/template.c
+%%DATADIR%%/top/1mlg.itp
+%%DATADIR%%/top/2mlg.itp
+%%DATADIR%%/top/FF.dat
+%%DATADIR%%/top/aminoacids.dat
+%%DATADIR%%/top/atom_nom.tbl
+%%DATADIR%%/top/atommass.dat
+%%DATADIR%%/top/benzamide.itp
+%%DATADIR%%/top/bondadd.itp
+%%DATADIR%%/top/bonds.dlg
+%%DATADIR%%/top/bromacs.dat
+%%DATADIR%%/top/buck.itp
+%%DATADIR%%/top/ca-shift.dat
+%%DATADIR%%/top/cb-shift.dat
+%%DATADIR%%/top/co-shift.dat
+%%DATADIR%%/top/dec50.gro
+%%DATADIR%%/top/decane.itp
+%%DATADIR%%/top/dgsolv.dat
+%%DATADIR%%/top/dlg.itp
+%%DATADIR%%/top/dmso.gro
+%%DATADIR%%/top/dmso.itp
+%%DATADIR%%/top/edissoc.dat
+%%DATADIR%%/top/export.dlg
+%%DATADIR%%/top/fa.itp
+%%DATADIR%%/top/ffG43a1-c.tdb
+%%DATADIR%%/top/ffG43a1-n.tdb
+%%DATADIR%%/top/ffG43a1.atp
+%%DATADIR%%/top/ffG43a1.ddb
+%%DATADIR%%/top/ffG43a1.hdb
+%%DATADIR%%/top/ffG43a1.itp
+%%DATADIR%%/top/ffG43a1.rtp
+%%DATADIR%%/top/ffG43a1bon.itp
+%%DATADIR%%/top/ffG43a1nb.itp
+%%DATADIR%%/top/ffG43a2-c.tdb
+%%DATADIR%%/top/ffG43a2-n.tdb
+%%DATADIR%%/top/ffG43a2.atp
+%%DATADIR%%/top/ffG43a2.ddb
+%%DATADIR%%/top/ffG43a2.hdb
+%%DATADIR%%/top/ffG43a2.itp
+%%DATADIR%%/top/ffG43a2.rtp
+%%DATADIR%%/top/ffG43a2bon.itp
+%%DATADIR%%/top/ffG43a2nb.itp
+%%DATADIR%%/top/ffG43b1-c.tdb
+%%DATADIR%%/top/ffG43b1-n.tdb
+%%DATADIR%%/top/ffG43b1.atp
+%%DATADIR%%/top/ffG43b1.ddb
+%%DATADIR%%/top/ffG43b1.hdb
+%%DATADIR%%/top/ffG43b1.itp
+%%DATADIR%%/top/ffG43b1.rtp
+%%DATADIR%%/top/ffG43b1bon.itp
+%%DATADIR%%/top/ffG43b1nb.itp
+%%DATADIR%%/top/ff_dum.itp
+%%DATADIR%%/top/ffgmx-c.tdb
+%%DATADIR%%/top/ffgmx-n.tdb
+%%DATADIR%%/top/ffgmx.atp
+%%DATADIR%%/top/ffgmx.ddb
+%%DATADIR%%/top/ffgmx.hdb
+%%DATADIR%%/top/ffgmx.itp
+%%DATADIR%%/top/ffgmx.n2t
+%%DATADIR%%/top/ffgmx.rtp
+%%DATADIR%%/top/ffgmx2-c.tdb
+%%DATADIR%%/top/ffgmx2-n.tdb
+%%DATADIR%%/top/ffgmx2.atp
+%%DATADIR%%/top/ffgmx2.ddb
+%%DATADIR%%/top/ffgmx2.hdb
+%%DATADIR%%/top/ffgmx2.itp
+%%DATADIR%%/top/ffgmx2.rtp
+%%DATADIR%%/top/ffgmx2bon.itp
+%%DATADIR%%/top/ffgmx2nb.itp
+%%DATADIR%%/top/ffgmxbon.itp
+%%DATADIR%%/top/ffgmxnb.itp
+%%DATADIR%%/top/ffoplsaa-c.tdb
+%%DATADIR%%/top/ffoplsaa-n.tdb
+%%DATADIR%%/top/ffoplsaa.atp
+%%DATADIR%%/top/ffoplsaa.ddb
+%%DATADIR%%/top/ffoplsaa.hdb
+%%DATADIR%%/top/ffoplsaa.itp
+%%DATADIR%%/top/ffoplsaa.rtp
+%%DATADIR%%/top/ffoplsaabon.itp
+%%DATADIR%%/top/ffoplsaanb.itp
+%%DATADIR%%/top/flexspc.itp
+%%DATADIR%%/top/flexspce.itp
+%%DATADIR%%/top/flexwat-ferguson.itp
+%%DATADIR%%/top/gromacs.dtd
+%%DATADIR%%/top/gurgle.dat
+%%DATADIR%%/top/h2p4o13.itp
+%%DATADIR%%/top/h2p8o25.itp
+%%DATADIR%%/top/h2po4.itp
+%%DATADIR%%/top/ha-shift.dat
+%%DATADIR%%/top/ions.itp
+%%DATADIR%%/top/links.dat
+%%DATADIR%%/top/methanol.itp
+%%DATADIR%%/top/phbres.dat
+%%DATADIR%%/top/ps.m2p
+%%DATADIR%%/top/random.dat
+%%DATADIR%%/top/refi_aa.dat
+%%DATADIR%%/top/spc.itp
+%%DATADIR%%/top/spc216.gro
+%%DATADIR%%/top/spce.itp
+%%DATADIR%%/top/specbond.dat
+%%DATADIR%%/top/ss.map
+%%DATADIR%%/top/surface.dat
+%%DATADIR%%/top/sw.itp
+%%DATADIR%%/top/table6-10.xvg
+%%DATADIR%%/top/table6-11.xvg
+%%DATADIR%%/top/table6-12.xvg
+%%DATADIR%%/top/table6-8.xvg
+%%DATADIR%%/top/table6-9.xvg
+%%DATADIR%%/top/tfe.itp
+%%DATADIR%%/top/tip3p.itp
+%%DATADIR%%/top/tip4p.gro
+%%DATADIR%%/top/tip4p.itp
+%%DATADIR%%/top/tip5p.gro
+%%DATADIR%%/top/tip5p.itp
+%%DATADIR%%/top/urea+h2o.gro
+%%DATADIR%%/top/urea.itp
+%%DATADIR%%/top/vdwradii.dat
+%%DATADIR%%/top/xlateat.dat
+%%DATADIR%%/tutor/cleanit
+%%DATADIR%%/tutor/gmxdemo/cpeptide.pdb
+%%DATADIR%%/tutor/gmxdemo/demo
+%%DATADIR%%/tutor/methanol/conf.gro
+%%DATADIR%%/tutor/methanol/grompp.mdp
+%%DATADIR%%/tutor/methanol/index.ndx
+%%DATADIR%%/tutor/methanol/methanol.itp
+%%DATADIR%%/tutor/methanol/methanol.pdb
+%%DATADIR%%/tutor/methanol/topol.top
+%%DATADIR%%/tutor/mixed/conf.gro
+%%DATADIR%%/tutor/mixed/grompp.mdp
+%%DATADIR%%/tutor/mixed/index.ndx
+%%DATADIR%%/tutor/mixed/mixed.pdb
+%%DATADIR%%/tutor/mixed/topol.top
+%%DATADIR%%/tutor/nmr1/conf.gro
+%%DATADIR%%/tutor/nmr1/grompp.mdp
+%%DATADIR%%/tutor/nmr1/pep.pdb
+%%DATADIR%%/tutor/nmr1/topol.top
+%%DATADIR%%/tutor/nmr2/conf.gro
+%%DATADIR%%/tutor/nmr2/genconf.gcp
+%%DATADIR%%/tutor/nmr2/grompp.mdp
+%%DATADIR%%/tutor/nmr2/pep.pdb
+%%DATADIR%%/tutor/nmr2/topol.top
+%%DATADIR%%/tutor/speptide/em.mdp
+%%DATADIR%%/tutor/speptide/full.mdp
+%%DATADIR%%/tutor/speptide/pr.mdp
+%%DATADIR%%/tutor/speptide/speptide.pdb
+%%DATADIR%%/tutor/water/conf.gro
+%%DATADIR%%/tutor/water/grompp.mdp
+%%DATADIR%%/tutor/water/index.ndx
+%%DATADIR%%/tutor/water/spc216.pdb
+%%DATADIR%%/tutor/water/topol.top
+@dirrm %%DATADIR%%/tutor/water
+@dirrm %%DATADIR%%/tutor/speptide
+@dirrm %%DATADIR%%/tutor/nmr2
+@dirrm %%DATADIR%%/tutor/nmr1
+@dirrm %%DATADIR%%/tutor/mixed
+@dirrm %%DATADIR%%/tutor/methanol
+@dirrm %%DATADIR%%/tutor/gmxdemo
+@dirrm %%DATADIR%%/tutor
+@dirrm %%DATADIR%%/top
+@dirrm %%DATADIR%%/template
+@dirrm %%DATADIR%%/html/online
+@dirrm %%DATADIR%%/html/images
+@dirrm %%DATADIR%%/html
+@dirrm %%DATADIR%%
 @dirrm include/gromacs/types
 @dirrm include/gromacs