diff options
Diffstat (limited to 'biology/tinker/pkg-plist')
| -rw-r--r-- | biology/tinker/pkg-plist | 697 |
1 files changed, 352 insertions, 345 deletions
diff --git a/biology/tinker/pkg-plist b/biology/tinker/pkg-plist index b7d3ffb..f9e728d 100644 --- a/biology/tinker/pkg-plist +++ b/biology/tinker/pkg-plist @@ -24,6 +24,7 @@ bin/optrigid bin/path bin/pdbxyz bin/polarize +bin/prmedit bin/protein bin/pss bin/pssrigid @@ -55,6 +56,7 @@ bin/xyzint bin/xyzpdb bin/xyzsybyl %%PORTDOCS%%%%DOCSDIR%%/README +%%PORTDOCS%%%%DOCSDIR%%/ffe-guide.pdf %%PORTDOCS%%%%DOCSDIR%%/guide.pdf %%PORTDOCS%%%%DOCSDIR%%/guide.txt %%PORTDOCS%%%%DOCSDIR%%/license.pdf @@ -66,6 +68,7 @@ bin/xyzsybyl %%PORTDOCS%%%%DOCSDIR%%/release-3.9 %%PORTDOCS%%%%DOCSDIR%%/release-4.0 %%PORTDOCS%%%%DOCSDIR%%/release-4.1 +%%PORTDOCS%%%%DOCSDIR%%/release-4.2 %%PORTDOCS%%%%DOCSDIR%%/summary.pdf %%PORTDOCS%%%%DOCSDIR%%/summary.txt %%PORTDOCS%%share/examples/tinker/README @@ -115,350 +118,354 @@ bin/xyzsybyl %%PORTDOCS%%share/examples/tinker/salt.key %%PORTDOCS%%share/examples/tinker/salt.log %%PORTDOCS%%share/examples/tinker/salt.run -%%PORTDOCS%%share/tinker/bench/README -%%PORTDOCS%%share/tinker/bench/bench1.key -%%PORTDOCS%%share/tinker/bench/bench1.run -%%PORTDOCS%%share/tinker/bench/bench1.xyz -%%PORTDOCS%%share/tinker/bench/bench2.key -%%PORTDOCS%%share/tinker/bench/bench2.run -%%PORTDOCS%%share/tinker/bench/bench2.xyz -%%PORTDOCS%%share/tinker/bench/bench3.key -%%PORTDOCS%%share/tinker/bench/bench3.run -%%PORTDOCS%%share/tinker/bench/bench3.xyz -%%PORTDOCS%%share/tinker/bench/bench4.dyn0 -%%PORTDOCS%%share/tinker/bench/bench4.key -%%PORTDOCS%%share/tinker/bench/bench4.log -%%PORTDOCS%%share/tinker/bench/bench4.run -%%PORTDOCS%%share/tinker/bench/bench4.xyz -%%PORTDOCS%%share/tinker/bench/bench5.dyn0 -%%PORTDOCS%%share/tinker/bench/bench5.key -%%PORTDOCS%%share/tinker/bench/bench5.log -%%PORTDOCS%%share/tinker/bench/bench5.run -%%PORTDOCS%%share/tinker/bench/bench5.xyz -%%PORTDOCS%%share/tinker/bench/results-2.3 -%%PORTDOCS%%share/tinker/bench/results-2.4 -%%PORTDOCS%%share/tinker/bench/results-2.9 -%%PORTDOCS%%share/tinker/bench/results-3.1 -%%PORTDOCS%%share/tinker/bench/results-3.2 -%%PORTDOCS%%share/tinker/bench/results-3.4 -%%PORTDOCS%%share/tinker/bench/results-3.5 -%%PORTDOCS%%share/tinker/bench/results-3.7 -%%PORTDOCS%%share/tinker/bench/results-3.8 -%%PORTDOCS%%share/tinker/bench/results-3.9 -%%PORTDOCS%%share/tinker/bench/results-4.0 -%%PORTDOCS%%share/tinker/bench/results-4.1 -share/tinker/params/README -share/tinker/params/amber94.prm -share/tinker/params/amber96.prm -share/tinker/params/amber98.prm -share/tinker/params/amber99.prm -share/tinker/params/amoeba.prm -share/tinker/params/charmm19.prm -share/tinker/params/charmm27.prm -share/tinker/params/dudek.prm -share/tinker/params/hoch.prm -share/tinker/params/mm2.prm -share/tinker/params/mm3.prm -share/tinker/params/mm3pro.prm -share/tinker/params/oplsaa.prm -share/tinker/params/oplsaal.prm -share/tinker/params/oplsua.prm -share/tinker/params/smooth.prm -share/tinker/params/smoothaa.prm -share/tinker/params/water.prm -%%WITH_VIEWER%%share/tinker/rasmol/rasmol.hlp -%%PORTDOCS%%share/tinker/test/README -%%PORTDOCS%%share/tinker/test/alkane.key -%%PORTDOCS%%share/tinker/test/alkane.xyz -%%PORTDOCS%%share/tinker/test/amoeba.key -%%PORTDOCS%%share/tinker/test/amoeba.xyz -%%PORTDOCS%%share/tinker/test/arach.int -%%PORTDOCS%%share/tinker/test/arach.key -%%PORTDOCS%%share/tinker/test/arach.xyz -%%PORTDOCS%%share/tinker/test/azulene.int -%%PORTDOCS%%share/tinker/test/azulene.key -%%PORTDOCS%%share/tinker/test/azulene.xyz -%%PORTDOCS%%share/tinker/test/bdna.int -%%PORTDOCS%%share/tinker/test/bdna.key -%%PORTDOCS%%share/tinker/test/bdna.make -%%PORTDOCS%%share/tinker/test/bdna.seq -%%PORTDOCS%%share/tinker/test/bdna.xyz -%%PORTDOCS%%share/tinker/test/bearing.key -%%PORTDOCS%%share/tinker/test/bearing.xyz -%%PORTDOCS%%share/tinker/test/bearing2.key -%%PORTDOCS%%share/tinker/test/bearing2.xyz -%%PORTDOCS%%share/tinker/test/benzene.int -%%PORTDOCS%%share/tinker/test/benzene.key -%%PORTDOCS%%share/tinker/test/benzene.xyz -%%PORTDOCS%%share/tinker/test/bowl.int -%%PORTDOCS%%share/tinker/test/bowl.key -%%PORTDOCS%%share/tinker/test/bowl.xyz -%%PORTDOCS%%share/tinker/test/bowl2.key -%%PORTDOCS%%share/tinker/test/bowl2.xyz -%%PORTDOCS%%share/tinker/test/bowl3.key -%%PORTDOCS%%share/tinker/test/bowl3.xyz -%%PORTDOCS%%share/tinker/test/bucky.int -%%PORTDOCS%%share/tinker/test/bucky.key -%%PORTDOCS%%share/tinker/test/bucky.xyz -%%PORTDOCS%%share/tinker/test/butane.int -%%PORTDOCS%%share/tinker/test/butane.key -%%PORTDOCS%%share/tinker/test/butane.xyz -%%PORTDOCS%%share/tinker/test/butane2.int -%%PORTDOCS%%share/tinker/test/butane2.key -%%PORTDOCS%%share/tinker/test/butane2.xyz -%%PORTDOCS%%share/tinker/test/butanes.dyn -%%PORTDOCS%%share/tinker/test/butanes.key -%%PORTDOCS%%share/tinker/test/butanes.xyz -%%PORTDOCS%%share/tinker/test/butanex.key -%%PORTDOCS%%share/tinker/test/butanex.xyz -%%PORTDOCS%%share/tinker/test/butopls.int -%%PORTDOCS%%share/tinker/test/butopls.key -%%PORTDOCS%%share/tinker/test/butopls.xyz -%%PORTDOCS%%share/tinker/test/butopls2.int -%%PORTDOCS%%share/tinker/test/butopls2.key -%%PORTDOCS%%share/tinker/test/butopls2.xyz -%%PORTDOCS%%share/tinker/test/c5.key -%%PORTDOCS%%share/tinker/test/c5.seq -%%PORTDOCS%%share/tinker/test/c5.xyz -%%PORTDOCS%%share/tinker/test/c7a.key -%%PORTDOCS%%share/tinker/test/c7a.seq -%%PORTDOCS%%share/tinker/test/c7a.xyz -%%PORTDOCS%%share/tinker/test/c7e.key -%%PORTDOCS%%share/tinker/test/c7e.seq -%%PORTDOCS%%share/tinker/test/c7e.xyz -%%PORTDOCS%%share/tinker/test/calmodulin.key -%%PORTDOCS%%share/tinker/test/calmodulin.pdb -%%PORTDOCS%%share/tinker/test/calmodulin.seq -%%PORTDOCS%%share/tinker/test/calmodulin.xyz -%%PORTDOCS%%share/tinker/test/copper.key -%%PORTDOCS%%share/tinker/test/copper.xyz -%%PORTDOCS%%share/tinker/test/cpentene.key -%%PORTDOCS%%share/tinker/test/cpentene.xyz -%%PORTDOCS%%share/tinker/test/crambin.key 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-%%PORTDOCS%%share/tinker/test/diene.key -%%PORTDOCS%%share/tinker/test/diene.xyz -%%PORTDOCS%%share/tinker/test/dimethane.key -%%PORTDOCS%%share/tinker/test/dimethane.xyz -%%PORTDOCS%%share/tinker/test/enkephalin.int -%%PORTDOCS%%share/tinker/test/enkephalin.key -%%PORTDOCS%%share/tinker/test/enkephalin.make -%%PORTDOCS%%share/tinker/test/enkephalin.seq -%%PORTDOCS%%share/tinker/test/enkephalin.xyz -%%PORTDOCS%%share/tinker/test/ermer.int -%%PORTDOCS%%share/tinker/test/ermer.key -%%PORTDOCS%%share/tinker/test/ermer.xyz -%%PORTDOCS%%share/tinker/test/ester.key -%%PORTDOCS%%share/tinker/test/ester.xyz -%%PORTDOCS%%share/tinker/test/ethane.int -%%PORTDOCS%%share/tinker/test/ethane.key -%%PORTDOCS%%share/tinker/test/ethane.xyz -%%PORTDOCS%%share/tinker/test/ethanol.int -%%PORTDOCS%%share/tinker/test/ethanol.key -%%PORTDOCS%%share/tinker/test/ethanol.xyz -%%PORTDOCS%%share/tinker/test/ethylene.int -%%PORTDOCS%%share/tinker/test/ethylene.key -%%PORTDOCS%%share/tinker/test/ethylene.xyz 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+%%PORTDOCS%%%%DATADIR%%/bench/bench4.dyn0 +%%PORTDOCS%%%%DATADIR%%/bench/bench4.key +%%PORTDOCS%%%%DATADIR%%/bench/bench4.log +%%PORTDOCS%%%%DATADIR%%/bench/bench4.run +%%PORTDOCS%%%%DATADIR%%/bench/bench4.xyz +%%PORTDOCS%%%%DATADIR%%/bench/bench5.dyn0 +%%PORTDOCS%%%%DATADIR%%/bench/bench5.key +%%PORTDOCS%%%%DATADIR%%/bench/bench5.log +%%PORTDOCS%%%%DATADIR%%/bench/bench5.run +%%PORTDOCS%%%%DATADIR%%/bench/bench5.xyz +%%PORTDOCS%%%%DATADIR%%/bench/results-2.3 +%%PORTDOCS%%%%DATADIR%%/bench/results-2.4 +%%PORTDOCS%%%%DATADIR%%/bench/results-2.9 +%%PORTDOCS%%%%DATADIR%%/bench/results-3.1 +%%PORTDOCS%%%%DATADIR%%/bench/results-3.2 +%%PORTDOCS%%%%DATADIR%%/bench/results-3.4 +%%PORTDOCS%%%%DATADIR%%/bench/results-3.5 +%%PORTDOCS%%%%DATADIR%%/bench/results-3.7 +%%PORTDOCS%%%%DATADIR%%/bench/results-3.8 +%%PORTDOCS%%%%DATADIR%%/bench/results-3.9 +%%PORTDOCS%%%%DATADIR%%/bench/results-4.0 +%%PORTDOCS%%%%DATADIR%%/bench/results-4.1 +%%PORTDOCS%%%%DATADIR%%/bench/results-4.2 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