diff options
Diffstat (limited to 'biology/tinker/files/patch-aa')
| -rw-r--r-- | biology/tinker/files/patch-aa | 218 |
1 files changed, 218 insertions, 0 deletions
diff --git a/biology/tinker/files/patch-aa b/biology/tinker/files/patch-aa new file mode 100644 index 0000000..455841a --- /dev/null +++ b/biology/tinker/files/patch-aa @@ -0,0 +1,218 @@ +*** ../make/Makefile.orig Sat Apr 11 11:38:14 1998 +--- ../make/Makefile Sat Nov 14 02:05:02 1998 +*************** +*** 9,16 **** + ## + ## 1. make all Build all the TINKER executables + ## 2. make rename Move the executables to BINDIR +! ## 3. make remove_links Create soft links in LINKDIR +! ## 4. make create_links Remove soft links from LINKDIR + ## 6. make listing Concatenate source to tinker.txt + ## 5. make clean Delete objects and executables + ## +--- 9,16 ---- + ## + ## 1. make all Build all the TINKER executables + ## 2. make rename Move the executables to BINDIR +! ## 3. make remove_links Remove soft links in LINKDIR +! ## 4. make create_links Create soft links from LINKDIR + ## 6. make listing Concatenate source to tinker.txt + ## 5. make clean Delete objects and executables + ## +*************** +*** 30,38 **** + ## LINKDIR Linked Copies of TINKER Executables + ## + +! TINKERDIR = /user/ponder/tinker +! BINDIR = $(TINKERDIR)/bin +! LINKDIR = /usr/local/bin + + #################################################################### + ## Known Machine Types; Uncomment One of the Following Sections ## +--- 30,38 ---- + ## LINKDIR Linked Copies of TINKER Executables + ## + +! TINKERDIR = ${WRKDIR} +! BINDIR = ${PREFIX}/bin +! #LINKDIR = /usr/local/bin + + #################################################################### + ## Known Machine Types; Uncomment One of the Following Sections ## +*************** +*** 45,57 **** + ## Compiler: DEC Fortran 77/90, V4.1 + ## + +! F77 = /usr/bin/f77 +! RM = /sbin/rm +! LIBS = +! F77FLAGS = -c +! OPTFLAGS = -fast -tune host +! LIBFLAGS = -rlv +! LINKFLAGS = -fast -non_shared -om -WL,-om_no_inst_sched + + ## + ## Machine: Silicon Graphics +--- 45,57 ---- + ## Compiler: DEC Fortran 77/90, V4.1 + ## + +! #F77 = /usr/bin/f77 +! #RM = /sbin/rm +! #LIBS = +! #F77FLAGS = -c +! #OPTFLAGS = -fast -tune host +! #LIBFLAGS = -rlv +! #LINKFLAGS = -fast -non_shared -om -WL,-om_no_inst_sched + + ## + ## Machine: Silicon Graphics +*************** +*** 104,109 **** +--- 104,134 ---- + #diagq.o: + # ${F77} ${F77FLAGS} -ffast-math diagq.f + ++ ## ++ ## Machine: IntelPC ++ ## CPU Type: Pentium Pro ++ ## Oper Sys: FreeBSD 3.0 ++ ## Compiler: f77(f2c/gcc version 2.7.2.1) || egcs g77 ++ ## ++ ++ F77 = ${FC} ++ RM = /bin/rm ++ ++ .if ${FC}==f77 ++ LIBS = -lU77 ++ F77FLAGS = -NL400 -c ++ LINKFLAGS = -L${PREFIX}/lib ++ .elseif ${FC}==g77 ++ LIBS= ++ F77FLAGS = -Wno-globals -fno-globals -c ++ LINKFLAGS = ++ .endif ++ ++ OPTFLAGS = ${FFLAGS} -ffast-math -malign-double ++ LIBFLAGS = -rcuv ++ diagq.o: ++ ${F77} ${F77FLAGS} -ffast-math diagq.f ++ + ################################################################# + ## Should not be Necessary to Change Things Below this Point ## + ################################################################# +*************** +*** 766,771 **** +--- 791,797 ---- + volume2.o \ + writeout.o \ + xyzatm.o ++ ranlib libtinker.a + + alchemy.x: + ${F77} ${LINKFLAGS} -o alchemy.x alchemy.o libtinker.a ${LIBS} +*************** +*** 857,906 **** + ${F77} ${LINKFLAGS} -o xyzsybyl.x xyzsybyl.o libtinker.a ${LIBS} + + rename: +! mv alchemy.x $(BINDIR)/alchemy +! mv analyze.x $(BINDIR)/analyze +! mv anneal.x $(BINDIR)/anneal +! mv archive.x $(BINDIR)/archive +! mv correlate.x $(BINDIR)/correlate +! mv crystal.x $(BINDIR)/crystal +! mv distgeom.x $(BINDIR)/distgeom +! mv document.x $(BINDIR)/document +! mv dynamic.x $(BINDIR)/dynamic +! mv gda.x $(BINDIR)/gda +! mv intedit.x $(BINDIR)/intedit +! mv intxyz.x $(BINDIR)/intxyz +! mv minimize.x $(BINDIR)/minimize +! mv minirot.x $(BINDIR)/minirot +! mv newton.x $(BINDIR)/newton +! mv newtrot.x $(BINDIR)/newtrot +! mv optimize.x $(BINDIR)/optimize +! mv optirot.x $(BINDIR)/optirot +! mv optrigid.x $(BINDIR)/optrigid +! mv path.x $(BINDIR)/path +! mv pdbxyz.x $(BINDIR)/pdbxyz +! mv protein.x $(BINDIR)/protein +! mv pss.x $(BINDIR)/pss +! mv pssrigid.x $(BINDIR)/pssrigid +! mv pssrot.x $(BINDIR)/pssrot +! mv saddle.x $(BINDIR)/saddle +! mv sniffer.x $(BINDIR)/sniffer +! mv spacefill.x $(BINDIR)/spacefill +! mv superpose.x $(BINDIR)/superpose +! mv sybylxyz.x $(BINDIR)/sybylxyz +! mv testgrad.x $(BINDIR)/testgrad +! mv testhess.x $(BINDIR)/testhess +! mv testlight.x $(BINDIR)/testlight +! mv testrot.x $(BINDIR)/testrot +! mv timer.x $(BINDIR)/timer +! mv timerot.x $(BINDIR)/timerot +! mv vibrate.x $(BINDIR)/vibrate +! mv vibrot.x $(BINDIR)/vibrot +! mv xtalfit.x $(BINDIR)/xtalfit +! mv xtalmin.x $(BINDIR)/xtalmin +! mv xyzedit.x $(BINDIR)/xyzedit +! mv xyzint.x $(BINDIR)/xyzint +! mv xyzpdb.x $(BINDIR)/xyzpdb +! mv xyzsybyl.x $(BINDIR)/xyzsybyl + + remove_links: + rm -f $(LINKDIR)/alchemy +--- 883,932 ---- + ${F77} ${LINKFLAGS} -o xyzsybyl.x xyzsybyl.o libtinker.a ${LIBS} + + rename: +! ${INSTALL} -s alchemy.x $(BINDIR)/alchemy +! ${INSTALL} -s analyze.x $(BINDIR)/analyze +! ${INSTALL} -s anneal.x $(BINDIR)/anneal +! ${INSTALL} -s archive.x $(BINDIR)/archive +! ${INSTALL} -s correlate.x $(BINDIR)/correlate +! ${INSTALL} -s crystal.x $(BINDIR)/crystal +! ${INSTALL} -s distgeom.x $(BINDIR)/distgeom +! ${INSTALL} -s document.x $(BINDIR)/document +! ${INSTALL} -s dynamic.x $(BINDIR)/dynamic +! ${INSTALL} -s gda.x $(BINDIR)/gda +! ${INSTALL} -s intedit.x $(BINDIR)/intedit +! ${INSTALL} -s intxyz.x $(BINDIR)/intxyz +! ${INSTALL} -s minimize.x $(BINDIR)/minimize +! ${INSTALL} -s minirot.x $(BINDIR)/minirot +! ${INSTALL} -s newton.x $(BINDIR)/newton +! ${INSTALL} -s newtrot.x $(BINDIR)/newtrot +! ${INSTALL} -s optimize.x $(BINDIR)/optimize +! ${INSTALL} -s optirot.x $(BINDIR)/optirot +! ${INSTALL} -s optrigid.x $(BINDIR)/optrigid +! ${INSTALL} -s path.x $(BINDIR)/path +! ${INSTALL} -s pdbxyz.x $(BINDIR)/pdbxyz +! ${INSTALL} -s protein.x $(BINDIR)/protein +! ${INSTALL} -s pss.x $(BINDIR)/pss +! ${INSTALL} -s pssrigid.x $(BINDIR)/pssrigid +! ${INSTALL} -s pssrot.x $(BINDIR)/pssrot +! ${INSTALL} -s saddle.x $(BINDIR)/saddle +! ${INSTALL} -s sniffer.x $(BINDIR)/sniffer +! ${INSTALL} -s spacefill.x $(BINDIR)/spacefill +! ${INSTALL} -s superpose.x $(BINDIR)/superpose +! ${INSTALL} -s sybylxyz.x $(BINDIR)/sybylxyz +! ${INSTALL} -s testgrad.x $(BINDIR)/testgrad +! ${INSTALL} -s testhess.x $(BINDIR)/testhess +! ${INSTALL} -s testlight.x $(BINDIR)/testlight +! ${INSTALL} -s testrot.x $(BINDIR)/testrot +! ${INSTALL} -s timer.x $(BINDIR)/timer +! ${INSTALL} -s timerot.x $(BINDIR)/timerot +! ${INSTALL} -s vibrate.x $(BINDIR)/vibrate +! ${INSTALL} -s vibrot.x $(BINDIR)/vibrot +! ${INSTALL} -s xtalfit.x $(BINDIR)/xtalfit +! ${INSTALL} -s xtalmin.x $(BINDIR)/xtalmin +! ${INSTALL} -s xyzedit.x $(BINDIR)/xyzedit +! ${INSTALL} -s xyzint.x $(BINDIR)/xyzint +! ${INSTALL} -s xyzpdb.x $(BINDIR)/xyzpdb +! ${INSTALL} -s xyzsybyl.x $(BINDIR)/xyzsybyl + + remove_links: + rm -f $(LINKDIR)/alchemy |
