1 files changed, 0 insertions, 69 deletions
diff --git a/biology/njplot/files/patch-makefile b/biology/njplot/files/patch-makefile
deleted file mode 100644
index 2f913de..0000000
--- a/biology/njplot/files/patch-makefile
+++ /dev/null
@@ -1,69 +0,0 @@
---- makefile.orig	Thu Oct 11 01:54:00 2007
-+++ makefile	Mon Dec  3 22:08:28 2007
-@@ -1,5 +1,5 @@
- #uncomment and locally adapt next line to fix the full helpfile path name
--HELPFILENAME = -DHELPFILENAME=\"/usr/share/njplot/njplot.help\"
-+HELPFILENAME = -DHELPFILENAME=\"$(LOCALBASE)/doc/njplot/njplot.help\"
- 
- #comment out next line and uncomment next 2 to use the PDFLib Lite library 
- NO_PDF = -DNO_PDF
-@@ -7,43 +7,45 @@
- #PDFLIB = -L$(PDF) -lpdf
- 
- # c compiler and linker
--CC = gcc
-+CC ?= gcc
- 
- # Vibrant top directory
--VIBRANT = /banques0/ncbiJun04
-+#VIBRANT = /banques0/ncbiJun04
-+NCBIINC = $(LOCALBASE)/include/ncbi
-+NCBILIB = $(LOCALBASE)/lib/ncbi
- 
- 
- # X11 include directory
--X11INCL = /usr/X11R6/include
-+X11INCL = $(LOCALBASE)/include
- 
- # motif library directory
--MOTIFLIB = /sw/lib
--MOTIFINCL = /sw/include
-+#MOTIFLIB = /sw/lib
-+#MOTIFINCL = /sw/include
- 
- OBJECTS = njplot-vib.o
- OBJUNROOTED = unrooted-vib.o preptree.o
- 
- 
--CFLAGS  = -c -DWIN_MOTIF -Dunix -I$(VIBRANT)/include -I$(VIBRANT)/vibrant -I$(VIBRANT)/corelib \
--	-I$(VIBRANT) -I$(PDF) -I$(X11INCL) -I$(MOTIFINCL) $(HELPFILENAME) $(NO_PDF) \
--	-Wimplicit-function-declaration -g
-+CFLAGS  = -c -DWIN_MOTIF -Dunix -I$(NCBIINC) \
-+	-I$(X11INCL) $(HELPFILENAME) $(NO_PDF) \
-+	-Wimplicit-function-declaration
- 	
- all: njplot  unrooted newicktops newicktotxt
- 
- 
- njplot : $(OBJECTS)
- 	$(CC) -g -o njplot $(OBJECTS) \
--        -L$(VIBRANT)/lib \
-+        -L$(NCBILIB) \
-         -lvibrant -lncbi \
-         $(PDFLIB)   \
--        -L$(MOTIFLIB) -lXm  \
--        -L/usr/X11R6/lib -lXmu -lXt -lX11 -lm
-+        $(MOTIFLIB) \
-+        -L$(LOCALBASE)/lib -lXmu -lXt -lX11 -lm
-         
- unrooted : $(OBJUNROOTED)
- 	$(CC) -g -o unrooted $(OBJUNROOTED) \
--        -L$(VIBRANT)/lib -lvibrant -lncbi \
--        -L$(MOTIFLIB) -lXm \
--        -L/usr/X11R6/lib -lXmu -lXt -lX11  -lm
-+        -L$(NCBILIB) -lvibrant -lncbi \
-+        $(MOTIFLIB) \
-+        -L$(LOCALBASE)/lib -lXmu -lXt -lX11  -lm
- 
- newicktops: njplot-vib.c
- 	$(CC) -DNO_GUI  -DNO_PDF -o $@ njplot-vib.c -lm