diff options
Diffstat (limited to 'biology/emboss/files/patch-dbxfasta.c')
| -rw-r--r-- | biology/emboss/files/patch-dbxfasta.c | 89 |
1 files changed, 89 insertions, 0 deletions
diff --git a/biology/emboss/files/patch-dbxfasta.c b/biology/emboss/files/patch-dbxfasta.c new file mode 100644 index 0000000..66f97c1 --- /dev/null +++ b/biology/emboss/files/patch-dbxfasta.c @@ -0,0 +1,89 @@ +--- emboss/dbxfasta.c.orig Mon Jan 23 12:22:12 2006 ++++ emboss/dbxfasta.c Wed Jan 4 16:31:37 2006 +@@ -2,7 +2,7 @@ + ** + ** Index flatfile databases + ** +-** @author: Copyright (C) Alan Bleasby (ableasby@hgmp.mrc.ac.uk) ++** @author Copyright (C) Alan Bleasby (ableasby@hgmp.mrc.ac.uk) + ** @@ + ** + ** This program is free software; you can redistribute it and/or +@@ -77,6 +77,7 @@ + + AjPBtId idobj = NULL; + AjPBtPri priobj = NULL; ++ AjPBtHybrid hyb = NULL; + + + AjPRegexp typeexp = NULL; +@@ -102,7 +103,8 @@ + + idobj = ajBtreeIdNew(); + priobj = ajBtreePriNew(); +- ++ hyb = ajBtreeHybNew(); ++ + + nfields = embBtreeSetFields(entry,fieldarray); + embBtreeSetDbInfo(entry,dbname,dbrs,datestr,release,dbtype,directory, +@@ -134,22 +136,22 @@ + if(entry->do_id) + { + ajStrToLower(&entry->id); +- ajStrAssS(&idobj->id,entry->id); +- idobj->dbno = i; +- idobj->offset = entry->fpos; +- idobj->dups = 0; +- ajBtreeInsertId(entry->idcache,idobj); ++ ajStrAssS(&hyb->key1,entry->id); ++ hyb->dbno = i; ++ hyb->offset = entry->fpos; ++ hyb->dups = 0; ++ ajBtreeHybInsertId(entry->idcache,hyb); + } + + if(entry->do_accession) + while(ajListPop(entry->ac,(void **)&word)) + { + ajStrToLower(&word); +- ajStrAssS(&idobj->id,word); +- idobj->dbno = i; +- idobj->offset = entry->fpos; +- idobj->dups = 0; +- ajBtreeInsertId(entry->accache,idobj); ++ ajStrAssS(&hyb->key1,word); ++ hyb->dbno = i; ++ hyb->offset = entry->fpos; ++ hyb->dups = 0; ++ ajBtreeHybInsertId(entry->accache,hyb); + ajStrDel(&word); + } + +@@ -157,11 +159,11 @@ + while(ajListPop(entry->sv,(void **)&word)) + { + ajStrToLower(&word); +- ajStrAssS(&idobj->id,word); +- idobj->dbno = i; +- idobj->offset = entry->fpos; +- idobj->dups = 0; +- ajBtreeInsertId(entry->svcache,idobj); ++ ajStrAssS(&hyb->key1,word); ++ hyb->dbno = i; ++ hyb->offset = entry->fpos; ++ hyb->dups = 0; ++ ajBtreeHybInsertId(entry->svcache,hyb); + ajStrDel(&word); + } + +@@ -197,7 +199,8 @@ + + ajBtreeIdDel(&idobj); + ajBtreePriDel(&priobj); +- ++ ajBtreeHybDel(&hyb); ++ + ajExit(); + + return 0; |
