diff options
| -rw-r--r-- | biology/pymol/Makefile | 2 | ||||
| -rw-r--r-- | biology/pymol/distinfo | 2 | ||||
| -rw-r--r-- | biology/pymol/files/patch-Rules.make | 38 | ||||
| -rw-r--r-- | biology/pymol/pkg-plist | 595 |
4 files changed, 328 insertions, 309 deletions
diff --git a/biology/pymol/Makefile b/biology/pymol/Makefile index 6af4fd3..11af04a 100644 --- a/biology/pymol/Makefile +++ b/biology/pymol/Makefile @@ -5,7 +5,7 @@ # $FreeBSD$ PORTNAME= pymol -PORTVERSION= 0.86 +PORTVERSION= 0.90 CATEGORIES= biology python MASTER_SITES= ${MASTER_SITE_SOURCEFORGE} MASTER_SITE_SUBDIR= pymol diff --git a/biology/pymol/distinfo b/biology/pymol/distinfo index eb546ea..5379be6 100644 --- a/biology/pymol/distinfo +++ b/biology/pymol/distinfo @@ -1 +1 @@ -MD5 (pymol-0_86-src.tgz) = 7610bb7689230eff2ec945236fdce0b8 +MD5 (pymol-0_90-src.tgz) = be181d10df622b011725d9541da22070 diff --git a/biology/pymol/files/patch-Rules.make b/biology/pymol/files/patch-Rules.make index ead488b..aa4c69f 100644 --- a/biology/pymol/files/patch-Rules.make +++ b/biology/pymol/files/patch-Rules.make @@ -1,6 +1,6 @@ ---- Rules.make.orig Wed Apr 30 11:42:37 2003 -+++ Rules.make Wed Apr 30 11:52:50 2003 -@@ -4,42 +4,42 @@ +--- Rules.make.orig Thu Jul 24 15:21:01 2003 ++++ Rules.make Thu Jul 24 15:27:58 2003 +@@ -4,22 +4,22 @@ # #- Building ---------------------------------------------------------- #--- Tell "make" how to get to PyMOL @@ -19,32 +19,23 @@ +PYTHON_EXE = $(PYMOL_PATH)/bin/python PYTHON_LIB = PYTHON_LIB_DIR = --PYTHON_INC_DIR = -I$(PYMOL_PATH)/ext/include/python2.1 \ -- -I$(PYMOL_PATH)/ext/include/python2.1/Numeric +-PYTHON_INC_DIR = -I$(PYMOL_PATH)/ext/include/python2.2 \ +- -I$(PYMOL_PATH)/ext/include/python2.2/Numeric +PYTHON_INC_DIR = -I$(PYMOL_PATH)/include/@PYTHON_VERSION@ \ + -I$(PYMOL_PATH)/include/@PYTHON_VERSION@/Numeric #--- Other external dependencies -EXT_INC_DIR = -I$(PYMOL_PATH)/ext/include -EXT_LIB_DIR = -L$(PYMOL_PATH)/ext/lib -+EXT_INC_DIR = -I$(PYMOL_PATH)/include -I. ++EXT_INC_DIR = -I$(PYMOL_PATH)/include +EXT_LIB_DIR = -L$(PYMOL_PATH)/lib #--------------------------------------------------------------------- # --#- Build for LINUX as an importable module --------------------------- -+#- Build for FreeBSD as an importable module --------------------------- - #--- System libraries --LIBS = $(PYTHON_LIB) -lglut -lGL -lGLU -ldl -lpng -lXmu $(ZLIB) -lm -+LIBS = $(PYTHON_LIB) -lglut -lGL -lGLU -lpng -lXmu $(ZLIB) -lm - #--- PyMOL configuration - DEFS = -D_PYMOL_MODULE -D_PYMOL_NUMPY - #--- How we build shared libraries - BUILD = -shared + #- Build for LINUX as an importable module --------------------------- +@@ -32,14 +32,14 @@ #--- What are we trying to build? --DEST = -o modules/pymol/_cmd.so --#--- Gcc Options for Linux + DEST = -o modules/pymol/_cmd.so + #--- Gcc Options for Linux -CCOPT1 = -march=i486 -D__i686__ -ffast-math -Wall -ansi -Wmissing-prototypes -+DEST = -o modules/_cmd.so -+#--- Gcc Options for FreeBSD +CCOPT1 = #-march=i486 -D__i686__ -ffast-math -Wall -ansi -Wmissing-prototypes #--- libraries for PyOpenGL PYOGL_LIB = -lglut -lGL -lGLU -lXmu -lXi @@ -57,15 +48,6 @@ #--- GCC Profiling #CCOPT2 = -pg -O3 -funroll-loops #--- Debugging -@@ -47,7 +47,7 @@ - #--------------------------------------------------------------------- - # - #- Choose One -------------------------------------------------------- --#--- Workaround for XFree86/DRI linux dll problem for module build -+#--- Workaround for XFree86/DRI FreeBSD dll problem for module build - BUGS = -D_DRI_WORKAROUND - #--- - #BUGS = @@ -69,18 +69,19 @@ # No changes normally required below here #--------------------------------------------------------------------- diff --git a/biology/pymol/pkg-plist b/biology/pymol/pkg-plist index 843bbcd..79ce103 100644 --- a/biology/pymol/pkg-plist +++ b/biology/pymol/pkg-plist @@ -1,385 +1,371 @@ bin/pymol -%%PORTDOCS%%share/examples/pymol/chempy/generate_amber.py -%%PORTDOCS%%share/examples/pymol/chempy/generate_mmff.py -%%PORTDOCS%%share/examples/pymol/cookbook/contact.pml -%%PORTDOCS%%share/examples/pymol/cookbook/README -%%PORTDOCS%%share/examples/pymol/cookbook/density.pml -%%PORTDOCS%%share/examples/pymol/cookbook/groel_es.pml -%%PORTDOCS%%share/examples/pymol/cookbook/packing.pml -%%PORTDOCS%%share/examples/pymol/cookbook/packsurf.pml -%%PORTDOCS%%share/examples/pymol/cookbook/ribosome.pml -%%PORTDOCS%%share/examples/pymol/devel/brick01.py -%%PORTDOCS%%share/examples/pymol/devel/cgo01.py -%%PORTDOCS%%share/examples/pymol/devel/cgo02.py -%%PORTDOCS%%share/examples/pymol/devel/cgo03.py -%%PORTDOCS%%share/examples/pymol/devel/cgo_3Dtext01.py -%%PORTDOCS%%share/examples/pymol/devel/cgo_label_hack.py -%%PORTDOCS%%share/examples/pymol/devel/chempy_model01.py -%%PORTDOCS%%share/examples/pymol/devel/chempy_model02.py -%%PORTDOCS%%share/examples/pymol/devel/chempy_model03.py -%%PORTDOCS%%share/examples/pymol/devel/gl01.py -%%PORTDOCS%%share/examples/pymol/devel/gl02.py -%%PORTDOCS%%share/examples/pymol/devel/gl03.py -%%PORTDOCS%%share/examples/pymol/devel/povray01.py -%%PORTDOCS%%share/examples/pymol/devel/sele_wiz.py -%%PORTDOCS%%share/examples/pymol/devel/start_pymol.py 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share/pymol/test/dat/small01.mol share/pymol/test/dat/tiny.pdb share/pymol/test/dat/water.pdb -share/pymol/test/README -share/pymol/test/run -share/pymol/test/show -share/pymol/test/trim.py -share/pymol/test/vdiff -share/pymol/test/win.py -share/pymol/test/inp/C0020pdb.pml share/pymol/test/inp/B01.py share/pymol/test/inp/B02.py +share/pymol/test/inp/B03.py share/pymol/test/inp/C0001quit.pml share/pymol/test/inp/C0010hello.pml +share/pymol/test/inp/C0020pdb.pml share/pymol/test/inp/C0025mol.pml share/pymol/test/inp/C0030pkl.pml share/pymol/test/inp/C0050multi.pml @@ -413,6 +394,12 @@ share/pymol/test/inp/C0100select.pml share/pymol/test/inp/C0105names.pml share/pymol/test/inp/C0140iterate.pml share/pymol/test/inp/C0150alter.pml +share/pymol/test/inp/C0160get.pml +share/pymol/test/inp/C0170scene.pml +share/pymol/test/inp/C0200feedback.pml +share/pymol/test/inp/C0201extend.pml +share/pymol/test/inp/C0202help_python.pml +share/pymol/test/inp/C0300session.pml share/pymol/test/inp/C0500misc.pml share/pymol/test/inp/C0600util.pml share/pymol/test/inp/C1000viewing.pml @@ -423,14 +410,18 @@ share/pymol/test/inp/C1040editing.pml share/pymol/test/inp/C1050fitting.py share/pymol/test/inp/C1060controlling.py share/pymol/test/inp/C1070exporting.pml +share/pymol/test/inp/C1080isomore.pml +share/pymol/test/inp/C1090coulomb.pml share/pymol/test/inp/L0010ccp4read.pml share/pymol/test/inp/L0020xplorread.pml share/pymol/test/inp/L0030isomesh.pml share/pymol/test/inp/L0040isomesh2.pml share/pymol/test/inp/L0100isomisc.pml +share/pymol/test/inp/L0200electro.pml share/pymol/test/inp/T01.py share/pymol/test/inp/T02.py share/pymol/test/inp/T03.py +share/pymol/test/inp/T04.py share/pymol/test/inp/U01.pml share/pymol/test/ref/C0001quit.log share/pymol/test/ref/C0010hello.log @@ -450,8 +441,13 @@ share/pymol/test/ref/C0105names.log share/pymol/test/ref/C0140iterate.log share/pymol/test/ref/C0150alter.1.pdb share/pymol/test/ref/C0150alter.log +share/pymol/test/ref/C0160get.log +share/pymol/test/ref/C0170scene.log +share/pymol/test/ref/C0200feedback.log +share/pymol/test/ref/C0201extend.log +share/pymol/test/ref/C0202help_python.log +share/pymol/test/ref/C0300session.log share/pymol/test/ref/C0500misc.log -share/pymol/test/ref/T01.log share/pymol/test/ref/C0600util.log share/pymol/test/ref/C1000viewing.log share/pymol/test/ref/C1010helping.log @@ -461,12 +457,21 @@ share/pymol/test/ref/C1040editing.log share/pymol/test/ref/C1050fitting.log share/pymol/test/ref/C1060controlling.log share/pymol/test/ref/C1070exporting.log +share/pymol/test/ref/C1080isomore.log +share/pymol/test/ref/C1090coulomb.log share/pymol/test/ref/L0010ccp4read.log share/pymol/test/ref/L0020xplorread.log share/pymol/test/ref/L0030isomesh.log share/pymol/test/ref/L0040isomesh2.log share/pymol/test/ref/L0100isomisc.log +share/pymol/test/ref/L0200electro.log +share/pymol/test/ref/T01.log share/pymol/test/ref/U01.log +share/pymol/test/run +share/pymol/test/show +share/pymol/test/trim.py +share/pymol/test/vdiff +share/pymol/test/win.py @dirrm share/pymol/test/ref @dirrm share/pymol/test/inp @dirrm share/pymol/test/dat @@ -489,8 +494,40 @@ share/pymol/test/ref/U01.log @dirrm share/pymol/modules/chempy/bmin @dirrm share/pymol/modules/chempy @dirrm share/pymol/modules -%%PORTDOCS%%@dirrm share/examples/pymol/devel -%%PORTDOCS%%@dirrm share/examples/pymol/cookbook -%%PORTDOCS%%@dirrm share/examples/pymol/chempy -%%PORTDOCS%%@dirrm share/examples/pymol @dirrm share/pymol +%%PORTDOCS%%%%EXAMPLESDIR%%/chempy/generate_amber.py +%%PORTDOCS%%%%EXAMPLESDIR%%/chempy/generate_mmff.py +%%PORTDOCS%%%%EXAMPLESDIR%%/cookbook/README +%%PORTDOCS%%%%EXAMPLESDIR%%/cookbook/contact.pml +%%PORTDOCS%%%%EXAMPLESDIR%%/cookbook/density.pml +%%PORTDOCS%%%%EXAMPLESDIR%%/cookbook/groel_es.pml +%%PORTDOCS%%%%EXAMPLESDIR%%/cookbook/packing.pml +%%PORTDOCS%%%%EXAMPLESDIR%%/cookbook/packsurf.pml +%%PORTDOCS%%%%EXAMPLESDIR%%/cookbook/ribosome.pml +%%PORTDOCS%%%%EXAMPLESDIR%%/devel/brick01.py +%%PORTDOCS%%%%EXAMPLESDIR%%/devel/cgo01.py +%%PORTDOCS%%%%EXAMPLESDIR%%/devel/cgo02.py +%%PORTDOCS%%%%EXAMPLESDIR%%/devel/cgo03.py +%%PORTDOCS%%%%EXAMPLESDIR%%/devel/cgo_3Dtext01.py +%%PORTDOCS%%%%EXAMPLESDIR%%/devel/cgo_label_hack.py +%%PORTDOCS%%%%EXAMPLESDIR%%/devel/chempy_model01.py +%%PORTDOCS%%%%EXAMPLESDIR%%/devel/chempy_model02.py +%%PORTDOCS%%%%EXAMPLESDIR%%/devel/chempy_model03.py +%%PORTDOCS%%%%EXAMPLESDIR%%/devel/gl01.py +%%PORTDOCS%%%%EXAMPLESDIR%%/devel/gl02.py +%%PORTDOCS%%%%EXAMPLESDIR%%/devel/gl03.py +%%PORTDOCS%%%%EXAMPLESDIR%%/devel/povray01.py +%%PORTDOCS%%%%EXAMPLESDIR%%/devel/sele_wiz.py +%%PORTDOCS%%%%EXAMPLESDIR%%/devel/start_pymol.py +%%PORTDOCS%%%%EXAMPLESDIR%%/devel/xmlrpc01.py +%%PORTDOCS%%%%EXAMPLESDIR%%/launching/README +%%PORTDOCS%%%%EXAMPLESDIR%%/launching/launch.py +%%PORTDOCS%%%%EXAMPLESDIR%%/launching/launch_demo.py +%%PORTDOCS%%%%EXAMPLESDIR%%/launching/launch_no_tk.py +%%PORTDOCS%%%%EXAMPLESDIR%%/launching/launch_viewer1.py +%%PORTDOCS%%%%EXAMPLESDIR%%/launching/launch_viewer2.py +%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/launching +%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/devel +%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/cookbook +%%PORTDOCS%%@dirrm %%EXAMPLESDIR%%/chempy +%%PORTDOCS%%@dirrm %%EXAMPLESDIR%% |
