Add missing files.

PR:		ports/75342
Submitted by:	maintainer.

7 files changed, 64 insertions, 9 deletions

diff --git a/science/vmd/Makefile b/science/vmd/Makefile
index 79aa4fd..a72abdc 100644
--- a/science/vmd/Makefile
+++ b/science/vmd/Makefile
@@ -7,10 +7,11 @@
 
 PORTNAME=		vmd
 PORTVERSION=		1.8.2
-PORTREVISION=		1
+PORTREVISION=		2
 CATEGORIES=		science graphics python tcl84 tk84
-MASTER_SITES=		#
-DISTFILES=		${PORTNAME}-${PORTVERSION}.src.tar.gz
+MASTER_SITES=		http://jedi.ks.uiuc.edu/~johns/raytracer/files/0.96/ \
+			ftp://ftp.ebi.ac.uk/pub/software/unix/stride/src/
+DISTFILES=		${VMD_DIST} ${TACHYON_DIST} ${STRIDE_DIST}
 
 MAINTAINER=		stephen@math.missouri.edu
 COMMENT=		A molecular visualization program
@@ -27,16 +28,19 @@ USE_GL=			yes
 USE_PYTHON=		yes
 USE_REINPLACE=		yes
 
-# I.A.N.A.L. so this may be overly restrictive.
 NO_PACKAGE=		"License has restrictions"
 NO_CDROM=		"License has restrictions"
 RESTRICTED=		"License has restrictions"
 
+VMD_DIST=		${PORTNAME}-${PORTVERSION}.src.tar.gz
+TACHYON_DIST=		tachyon-0.96.tar.gz
+STRIDE_DIST=		stride.tar.gz
+
 .include <bsd.port.pre.mk>
 
 # Check for VMD sources
-.if !exists(${DISTDIR}/${DISTFILES}) # && !defined(PACKAGE_BUILDING)
-ECHO_MSG=	/usr/bin/printf
+.if !exists(${DISTDIR}/${VMD_DIST}) # && !defined(PACKAGE_BUILDING)
+ECHO_MSG=	${PRINTF}
 IGNORE=	:\n\
 Because of licensing restrictions, you must fetch the source distribution\n\
 manually.  Please access\n\
@@ -44,9 +48,16 @@ http://www.ks.uiuc.edu/Development/Download/download.cgi?PackageName=VMD\n\
 with a web browser.  You will be required to log in and register,\n\
 but you can create an account on this page.  After registration and\n\
 accepting the University of Illinois agreement, download the source file,\n\
-${DISTFILES}.  Please place this file in ${DISTDIR}.\n
+${VMD_DIST}.  Please place this file in ${DISTDIR}.\n
 .endif
 
+do-extract:
+	${MKDIR} ${WRKDIR}
+	cd ${WRKDIR} && ${TAR} xfz ${DISTDIR}/${VMD_DIST}
+	cd ${WRKSRC}/lib/surf && ${TAR} xfz surf.tar.Z
+	cd ${WRKSRC}/lib && ${TAR} xfz ${DISTDIR}/${TACHYON_DIST}
+	cd ${WRKSRC}/lib/stride && ${TAR} xfz ${DISTDIR}/${STRIDE_DIST}
+
 post-patch:
 	${REINPLACE_CMD} "s/-lpthread/${PTHREAD_LIBS}/" ${WRKSRC}/configure
 	${REINPLACE_CMD} "s/-ltk8.4/-ltk84/" ${WRKSRC}/configure
@@ -55,11 +66,15 @@ post-patch:
 	${REINPLACE_CMD} "s/python2.2/${PYTHON_VERSION}/" ${WRKSRC}/configure
 
 do-build:
+	cd ${WRKSRC}/lib/tachyon/unix && ${SETENV} ${MAKE_ENV} ${GMAKE} bsd && ${MV} ../compile/bsd/tachyon ../tachyon_FREEBSD
 	cd ${WRKDIR}/plugins && ${SETENV} ${MAKE_ENV} PLUGINDIR=${WRKSRC}/plugins ${GMAKE} FREEBSD distrib
 	cd ${WRKSRC} && ${SETENV} ${MAKE_ENV} TCL_INCLUDE_DIR=${PREFIX}/include/tcl8.4 TK_INCLUDE_DIR=${PREFIX}/include/tk8.4 ${GMAKE} freebsd.opengl
 	cd ${WRKSRC}/src && ${SETENV} ${MAKE_ENV} ${GMAKE} all
+	cd ${WRKSRC}/lib/surf && ${SETENV} ${MAKE_ENV} ${GMAKE} depend && ${SETENV} ${MAKE_ENV} ${GMAKE} surf && ${MV} surf surf_FREEBSD
+	cd ${WRKSRC}/lib/stride && ${SETENV} ${MAKE_ENV} ${GMAKE} && ${MV} stride stride_FREEBSD
 
 do-install:
 	cd ${WRKSRC}/src && ${SETENV} ${MAKE_ENV} ${GMAKE} install
+#	cd ${WRKSRC}/lib/surf && ${INSTALL_PROGRAM} surf_FREEBSD ${PREFIX}/lib/vmd
 
 .include <bsd.port.post.mk>
diff --git a/science/vmd/distinfo b/science/vmd/distinfo
index e94e8ce..24df7f7 100644
--- a/science/vmd/distinfo
+++ b/science/vmd/distinfo
@@ -1,2 +1,6 @@
 MD5 (vmd-1.8.2.src.tar.gz) = 8ad9cb90d954740f3b54be585526698d
 SIZE (vmd-1.8.2.src.tar.gz) = 7192878
+MD5 (tachyon-0.96.tar.gz) = db695196231a304b8102c1d6a0f6f6f2
+SIZE (tachyon-0.96.tar.gz) = 2419955
+MD5 (stride.tar.gz) = bdef3a3e1af8cbdf8fbfefacfa9a929f
+SIZE (stride.tar.gz) = 56441
diff --git a/science/vmd/files/patch-Makefile b/science/vmd/files/patch-Makefile
index 7469e12..4dc2055 100644
--- a/science/vmd/files/patch-Makefile
+++ b/science/vmd/files/patch-Makefile
@@ -5,12 +5,12 @@
  ## FreeBSD builds
  freebsd.mesa:
 -	./configure FREEBSD MESA FLTK TK TCL IMD VRPN PYTHON PTHREADS LIBTACHYON NUMPY SILENT
-+	./configure FREEBSD MESA FLTK TK TCL IMD PYTHON PTHREADS NUMPY SILENT
++	./configure FREEBSD MESA FLTK TK TCL IMD PYTHON PTHREADS LIBTACHYON NUMPY SILENT
  
  # FreeBSD doesn't have hardware good accelleration support
  freebsd.opengl:
 -	./configure FREEBSD OPENGL FLTK TK IMD VRPN SILENT SPACEBALL TCL PTHREADS ACTC LIBTACHYON PYTHON NUMPY
-+	./configure FREEBSD OPENGL FLTK TK IMD SILENT TCL PTHREADS PYTHON NUMPY
++	./configure FREEBSD OPENGL FLTK TK IMD SILENT TCL PTHREADS LIBTACHYON PYTHON NUMPY
  
  
  
diff --git a/science/vmd/files/patch-configure b/science/vmd/files/patch-configure
index 19f2bb9..2e0afa6 100644
--- a/science/vmd/files/patch-configure
+++ b/science/vmd/files/patch-configure
@@ -1,5 +1,16 @@
 --- configure-xxx	Fri Dec  5 13:20:58 2003
 +++ configure	Thu Aug 12 00:22:30 2004
+@@ -624,8 +624,8 @@
+ # This may be commented out if not required.
+ $libtachyon_defines        = "-DVMDLIBTACHYON";
+ $libtachyon_dir         = "$vmd_library_dir/tachyon";
+-$libtachyon_include     = "-I$libtachyon_dir/include";
+-$libtachyon_library     = "-L$libtachyon_dir/lib_$config_arch";
++$libtachyon_include     = "-I$libtachyon_dir/src";
++$libtachyon_library     = "-L$libtachyon_dir/compile/bsd";
+ $libtachyon_libs        = "-ltachyon";
+ @libtachyon_cc             = ();
+ @libtachyon_ccpp           = ('LibTachyonDisplayDevice.C'
 @@ -1174,8 +1174,10 @@
  
      # XFree 4.0 Direct Rendering Interface and GLX 
diff --git a/science/vmd/files/patch-stride.c b/science/vmd/files/patch-stride.c
new file mode 100644
index 0000000..35ea929
--- /dev/null
+++ b/science/vmd/files/patch-stride.c
@@ -0,0 +1,11 @@
+--- lib/stride/stride.c-xxx	Fri Dec 17 18:18:42 2004
++++ lib/stride/stride.c	Fri Dec 17 18:19:21 2004
+@@ -93,7 +93,7 @@
+   for( i=0; i<NHBond; i++ ) free(HBond[i]);
+   free(Cmd);
+ 
+-  return(SUCCESS);
++  return(0);
+ }
+ 
+ void ProcessStrideOptions(char **List, int ListLength, COMMAND *Cmd)
diff --git a/science/vmd/files/patch-stride.h b/science/vmd/files/patch-stride.h
new file mode 100644
index 0000000..3b95be6
--- /dev/null
+++ b/science/vmd/files/patch-stride.h
@@ -0,0 +1,11 @@
+--- lib/stride/stride.h-xxx	Fri Dec 17 18:18:07 2004
++++ lib/stride/stride.h	Fri Dec 17 18:18:30 2004
+@@ -40,7 +40,7 @@
+ #define MAX_BOND                  100
+ #define MAX_ASSIGN                300
+ #define MAX_INFO                  1000
+-#define MAX_AT_IN_RES             50
++#define MAX_AT_IN_RES             75
+ #define MAX_AT_IN_HETERORES       200
+ #define MAXRESDNR                 6
+ #define MAXRESACC                 6 
diff --git a/science/vmd/pkg-plist b/science/vmd/pkg-plist
index e2b2d0a..97dcc53 100644
--- a/science/vmd/pkg-plist
+++ b/science/vmd/pkg-plist
@@ -4,6 +4,9 @@ lib/vmd/Announcement
 lib/vmd/README
 lib/vmd/LICENSE
 lib/vmd/vmd_FREEBSD
+lib/vmd/surf_FREEBSD
+lib/vmd/stride_FREEBSD
+lib/vmd/tachyon_FREEBSD
 lib/vmd/scripts/CVS/Root
 lib/vmd/scripts/CVS/Repository
 lib/vmd/scripts/CVS/Entries