MFH: r437435 r437437 r437439 r437475 by gerald

Remove files/patch-armv6-hf-support since armv6hf no longer exists as
an arch.

Reported by:	andreast

Update lang/gcc and hence the default version of GCC in the Ports
Collection (requested by USE_GCC=yes and various USES=compiler
invocations) from GCC 4.9.4 to GCC 5.4.

files/patch-arm-support and files/patch-gcc_system.h have become
obsolete.  New patches files/patch-arm-unwind-cxx-support and
files/patch-libc++ help support arm targets and new libc++ in base.

ONLY_FOR_ARCHS now also includes arm.

A new option GRAPHITE_DESC, off by default for now, adds support for
Graphite loop optimizations.

Finally, conflicts with other lang/gcc* ports are adjusted suitably.

In terms of changes for users, this upgrade brings the following:

The default mode for C is now -std=gnu11 instead of -std=gnu89.
New warning options -Wc90-c99-compat and -Wc99-c11-compat may
prove useful on that front.

The C++ front end now has full C++14 language support including
C++14 variable templates, C++14 aggregates with non-static data
member initializers, C++14 extended constexpr, and more.
The Standard C++ Library (libstdc++) has full C++11 support and
experimental full C++14 support.  It uses a new ABI by default.

There have been significant improvements to inter-procedural optimizations
and link-time optimization such as One Definition Rule based merging of C++
types as well as register allocation.

OpenMP 4.0 specification offloading features are now supported by the C,
C++, and Fortran compilers.  Cilk Plus, an extension to the C and C++
languages to support data and task parallelism, has been added as well.

New warning options -Wswitch-bool, -Wlogical-not-parentheses,
-Wbool-compare and -Wsizeof-array-argument may prove useful as
may new preprocessor directives __has_include, __has_include_next,
and __has_attribute.

GCC can now be built as a shared library for embedding in other processes
(such as interpreters), suitable for Just-In-Time compilation to machine
code.  This provides a C API and a C++ wrapper API.

Many code generation improvements for AArch64, ARM, support for
AVX-512{BW,DQ,VL,IFMA,VBMI} and Intel MPX on x86-64, and generally
improvements on many targets.

The Local Register Allocator (LRA) now contains a rematerialization
subpass and is able to reuse the PIC hard register on x86/x86-64 to
improve performance of position independent code.

https://gcc.gnu.org/gcc-5/changes.html has a more extensive set of
changes and https://gcc.gnu.org/gcc-5/porting_to.html has a solid
overview of issue you may encountering porting to this new version.

PR:             216707, 218125
Tested by:      antoine (-exp runs)
Supported by:   jbeich, tcberner, and others

Bump PORTREVISIONs for ports depending on the canonical version of GCC and
lang/gcc which have moved from GCC 4.9.4 to GCC 5.4 (at least under some
circumstances such as versions of FreeBSD or platforms).

This includes ports
 - with USE_GCC=yes or USE_GCC=any,
 - with USES=fortran,
 - using using Mk/bsd.octave.mk which in turn has USES=fortran, and
 - with USES=compiler specifying openmp, nestedfct, c++11-lib, c++14-lang,
   c++11-lang, c++0x, c11, or gcc-c++11-lib.

PR:		216707

Add support for aarch64.

Submitted by:	andreast

Approved by:	ports-secteam (junovitch)

37 files changed, 37 insertions, 32 deletions

diff --git a/science/cdf/Makefile b/science/cdf/Makefile
index a58894e..0b5399d 100644
--- a/science/cdf/Makefile
+++ b/science/cdf/Makefile
@@ -3,7 +3,7 @@
 
 PORTNAME=	cdf3
 PORTVERSION=	3.3.0
-PORTREVISION=	6
+PORTREVISION=	7
 CATEGORIES=	science
 MASTER_SITES=	LOCAL/thierry/${PORTNAME} \
 		ftp://cdaweb.gsfc.nasa.gov/pub/cdf/dist/cdf${VER}/unix/
diff --git a/science/cgnslib/Makefile b/science/cgnslib/Makefile
index 88d6f51..aab64e6 100644
--- a/science/cgnslib/Makefile
+++ b/science/cgnslib/Makefile
@@ -3,7 +3,7 @@
 
 PORTNAME=	cgnslib
 DISTVERSION=	3.2.1
-PORTREVISION=	6
+PORTREVISION=	7
 PORTEPOCH=	1
 CATEGORIES=	science
 MASTER_SITES=	SF/cgns/${PORTNAME}_${PORTVERSION:R}/
diff --git a/science/clhep/Makefile b/science/clhep/Makefile
index a114263..d5d0630 100644
--- a/science/clhep/Makefile
+++ b/science/clhep/Makefile
@@ -3,7 +3,7 @@
 
 PORTNAME=	clhep
 PORTVERSION=	2.3.1.1
-PORTREVISION=	1
+PORTREVISION=	2
 CATEGORIES=	science
 MASTER_SITES=	http://proj-clhep.web.cern.ch/proj-clhep/DISTRIBUTION/tarFiles/
 
diff --git a/science/dcl/Makefile b/science/dcl/Makefile
index 9b7898e..3f61fdf 100644
--- a/science/dcl/Makefile
+++ b/science/dcl/Makefile
@@ -3,7 +3,7 @@
 
 PORTNAME=	dcl
 PORTVERSION=	5.4.8
-PORTREVISION=	2
+PORTREVISION=	3
 CATEGORIES=	science graphics
 MASTER_SITES=	http://www.gfd-dennou.org/library/dcl/ \
 		http://dennou-h.gfd-dennou.org/library/dcl/ \
diff --git a/science/dlpoly-classic/Makefile b/science/dlpoly-classic/Makefile
index 9043a15..7a8c4b2 100644
--- a/science/dlpoly-classic/Makefile
+++ b/science/dlpoly-classic/Makefile
@@ -3,7 +3,7 @@
 
 PORTNAME=	dlpoly
 PORTVERSION=	1.8
-PORTREVISION=	11
+PORTREVISION=	12
 CATEGORIES=	science java
 MASTER_SITES=	http://ccpforge.cse.rl.ac.uk/gf/download/frsrelease/238/2028/
 PKGNAMESUFFIX=	classic
diff --git a/science/fvcom/Makefile b/science/fvcom/Makefile
index 5935d93..92e12f6 100644
--- a/science/fvcom/Makefile
+++ b/science/fvcom/Makefile
@@ -3,7 +3,7 @@
 
 PORTNAME=	fvcom
 PORTVERSION=	2.7.1
-PORTREVISION?=	7
+PORTREVISION?=	8
 CATEGORIES=	science
 MASTER_SITES=	http://fvcom.smast.umassd.edu/FVCOM/index.html/
 DISTNAME=	sourcecode1
diff --git a/science/fvm/Makefile b/science/fvm/Makefile
index cac92e1..d245184 100644
--- a/science/fvm/Makefile
+++ b/science/fvm/Makefile
@@ -3,7 +3,7 @@
 
 PORTNAME=	fvm
 PORTVERSION=	0.15.5
-PORTREVISION=	3
+PORTREVISION=	4
 CATEGORIES=	science parallel
 MASTER_SITES=	http://code-saturne.org/releases/
 
diff --git a/science/getdp/Makefile b/science/getdp/Makefile
index d55e0dc..34822ea 100644
--- a/science/getdp/Makefile
+++ b/science/getdp/Makefile
@@ -3,7 +3,7 @@
 
 PORTNAME=	getdp
 PORTVERSION=	2.8.0
-PORTREVISION=	1
+PORTREVISION=	2
 CATEGORIES=	science
 MASTER_SITES=	http://www.geuz.org/getdp/src/
 DISTNAME=	${PORTNAME}-${PORTVERSION}-source
diff --git a/science/ghemical/Makefile b/science/ghemical/Makefile
index 3df23c1..ca72505 100644
--- a/science/ghemical/Makefile
+++ b/science/ghemical/Makefile
@@ -3,7 +3,7 @@
 
 PORTNAME=	ghemical
 PORTVERSION=	3.0.0
-PORTREVISION=	9
+PORTREVISION=	10
 CATEGORIES=	science
 MASTER_SITES=	http://bioinformatics.org/ghemical/download/%SUBDIR%/
 MASTER_SITE_SUBDIR=	release20111012 current
diff --git a/science/gnudatalanguage/Makefile b/science/gnudatalanguage/Makefile
index 3e5b7dd..10b86c1 100644
--- a/science/gnudatalanguage/Makefile
+++ b/science/gnudatalanguage/Makefile
@@ -3,6 +3,7 @@
 
 PORTNAME=	gnudatalanguage
 DISTVERSION=	0.9.7
+PORTREVISION=	1
 CATEGORIES=	science lang
 MASTER_SITES=	SF/${PORTNAME}/gdl/${PORTVERSION}
 .if defined(BUILD_PYTHON_MODULE)
diff --git a/science/gromacs/Makefile b/science/gromacs/Makefile
index 2e9008c..9d16628 100644
--- a/science/gromacs/Makefile
+++ b/science/gromacs/Makefile
@@ -3,7 +3,7 @@
 
 PORTNAME=	gromacs
 PORTVERSION=	5.0.6
-PORTREVISION=	4
+PORTREVISION=	5
 CATEGORIES=	science
 MASTER_SITES=	ftp://ftp.gromacs.org/pub/gromacs/
 
diff --git a/science/harminv/Makefile b/science/harminv/Makefile
index 74c2a80..491363b 100644
--- a/science/harminv/Makefile
+++ b/science/harminv/Makefile
@@ -3,7 +3,7 @@
 
 PORTNAME=	harminv
 PORTVERSION=	1.3.1
-PORTREVISION=	8
+PORTREVISION=	9
 CATEGORIES=	science
 MASTER_SITES=	http://ab-initio.mit.edu/harminv/
 
diff --git a/science/hdf/Makefile b/science/hdf/Makefile
index 78b6086..01e7fb8 100644
--- a/science/hdf/Makefile
+++ b/science/hdf/Makefile
@@ -3,7 +3,7 @@
 
 PORTNAME=	hdf
 PORTVERSION=	4.2.11
-PORTREVISION=	1
+PORTREVISION=	2
 PORTEPOCH=	1
 CATEGORIES=	science archivers graphics
 MASTER_SITES=	http://www.hdfgroup.org/ftp/HDF/releases/HDF${PORTVERSION}/src/ \
diff --git a/science/hdf5-18/Makefile b/science/hdf5-18/Makefile
index 2d63fcb..cf4fab0 100644
--- a/science/hdf5-18/Makefile
+++ b/science/hdf5-18/Makefile
@@ -3,7 +3,7 @@
 
 PORTNAME=	hdf5
 PORTVERSION=	1.8.18
-PORTREVISION=	1
+PORTREVISION=	2
 CATEGORIES=	science archivers graphics
 MASTER_SITES=	https://support.hdfgroup.org/ftp/HDF5/current18/src/	\
 		http://support.hdfgroup.org/ftp/HDF5/current18/src/	\
diff --git a/science/hdf5/Makefile b/science/hdf5/Makefile
index c4bd3e2..ad17454 100644
--- a/science/hdf5/Makefile
+++ b/science/hdf5/Makefile
@@ -3,7 +3,7 @@
 
 PORTNAME=	hdf5
 PORTVERSION=	1.10.0
-PORTREVISION=	2
+PORTREVISION=	3
 CATEGORIES=	science archivers graphics
 MASTER_SITES=	https://www.hdfgroup.org/ftp/HDF5/releases/hdf5-${PORTVERSION:R}/${DISTNAME}/src/ \
 MASTER_SITES=	https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-${PORTVERSION:R}/${DISTNAME}/src/ \
diff --git a/science/isaac-cfd/Makefile b/science/isaac-cfd/Makefile
index 4901941..11d5bc4 100644
--- a/science/isaac-cfd/Makefile
+++ b/science/isaac-cfd/Makefile
@@ -3,7 +3,7 @@
 
 PORTNAME=	isaac
 PORTVERSION=	4.2
-PORTREVISION=	9
+PORTREVISION=	10
 CATEGORIES=	science
 MASTER_SITES=	SF/${PORTNAME}-cfd/${PORTNAME}-cfd/ISAAC%20Version%20${PORTVERSION}
 DISTFILES=	${PORTNAME}src.4_2${EXTRACT_SUFX} ${PORTNAME}mk.4_2${EXTRACT_SUFX}
diff --git a/science/libctl/Makefile b/science/libctl/Makefile
index dd3b20e..864a1ff 100644
--- a/science/libctl/Makefile
+++ b/science/libctl/Makefile
@@ -3,7 +3,7 @@
 
 PORTNAME=	libctl
 PORTVERSION=	3.2.2
-PORTREVISION=	1
+PORTREVISION=	2
 CATEGORIES=	science math
 MASTER_SITES=	http://ab-initio.mit.edu/libctl/
 
diff --git a/science/libgeodecomp/Makefile b/science/libgeodecomp/Makefile
index 559bb8b..65a6b5b 100644
--- a/science/libgeodecomp/Makefile
+++ b/science/libgeodecomp/Makefile
@@ -3,6 +3,7 @@
 
 PORTNAME=		libgeodecomp
 PORTVERSION=		0.4.0
+PORTREVISION=	1
 CATEGORIES=		science devel
 MASTER_SITES=		http://www.libgeodecomp.org/archive/
 
diff --git a/science/libghemical/Makefile b/science/libghemical/Makefile
index 2aefcbf..f1306b5 100644
--- a/science/libghemical/Makefile
+++ b/science/libghemical/Makefile
@@ -3,7 +3,7 @@
 
 PORTNAME=	libghemical
 PORTVERSION=	3.0.0
-PORTREVISION=	7
+PORTREVISION=	8
 CATEGORIES=	science
 MASTER_SITES=	http://bioinformatics.org/ghemical/download/release20111012/	\
 		http://bioinformatics.org/ghemical/download/current/
diff --git a/science/libint/Makefile b/science/libint/Makefile
index 5f761a5..1a47749 100644
--- a/science/libint/Makefile
+++ b/science/libint/Makefile
@@ -4,7 +4,7 @@
 PORTNAME=	libint
 DISTVERSIONPREFIX=	release-
 DISTVERSION=	1-1-6
-PORTREVISION=	2
+PORTREVISION=	3
 CATEGORIES=	science
 
 MAINTAINER=	ports@FreeBSD.org
diff --git a/science/libxc/Makefile b/science/libxc/Makefile
index 3587abf..469b80b 100644
--- a/science/libxc/Makefile
+++ b/science/libxc/Makefile
@@ -3,7 +3,7 @@
 
 PORTNAME=	libxc
 PORTVERSION=	3.0.0
-PORTREVISION=	1
+PORTREVISION=	2
 CATEGORIES=	science
 MASTER_SITES=	http://www.tddft.org/programs/octopus/download/libxc/
 
diff --git a/science/massxpert/Makefile b/science/massxpert/Makefile
index 3dbd001..5cde629 100644
--- a/science/massxpert/Makefile
+++ b/science/massxpert/Makefile
@@ -3,7 +3,7 @@
 
 PORTNAME=	massxpert
 PORTVERSION=	3.4.0
-PORTREVISION=	6
+PORTREVISION=	7
 CATEGORIES=	science
 MASTER_SITES=	http://download.tuxfamily.org/massxpert/source/
 
diff --git a/science/mbdyn/Makefile b/science/mbdyn/Makefile
index 03ab021..9f542e3 100644
--- a/science/mbdyn/Makefile
+++ b/science/mbdyn/Makefile
@@ -3,7 +3,7 @@
 
 PORTNAME=	mbdyn
 PORTVERSION=	1.7.1
-PORTREVISION=	1
+PORTREVISION=	2
 CATEGORIES=	science
 MASTER_SITES=	https://www.mbdyn.org/userfiles/downloads/
 
diff --git a/science/meep/Makefile b/science/meep/Makefile
index fcc5e8f..8018745 100644
--- a/science/meep/Makefile
+++ b/science/meep/Makefile
@@ -3,7 +3,7 @@
 
 PORTNAME=	meep
 PORTVERSION=	1.2.1
-PORTREVISION=	5
+PORTREVISION=	6
 CATEGORIES=	science
 MASTER_SITES=	http://ab-initio.mit.edu/meep/
 
diff --git a/science/mpb/Makefile b/science/mpb/Makefile
index 1af4a0c..21e07a6 100644
--- a/science/mpb/Makefile
+++ b/science/mpb/Makefile
@@ -3,7 +3,7 @@
 
 PORTNAME=	mpb
 PORTVERSION=	1.5
-PORTREVISION=	4
+PORTREVISION=	5
 CATEGORIES=	science
 MASTER_SITES=	http://ab-initio.mit.edu/mpb/
 
diff --git a/science/mpqc/Makefile b/science/mpqc/Makefile
index 4f1d188..2f71800 100644
--- a/science/mpqc/Makefile
+++ b/science/mpqc/Makefile
@@ -3,7 +3,7 @@
 
 PORTNAME=	mpqc
 PORTVERSION=	2.3.1
-PORTREVISION=	28
+PORTREVISION=	29
 CATEGORIES=	science parallel
 MASTER_SITES=	SF
 
diff --git a/science/ncs/Makefile b/science/ncs/Makefile
index 3dd9bd8..620a04e 100644
--- a/science/ncs/Makefile
+++ b/science/ncs/Makefile
@@ -3,7 +3,7 @@
 
 PORTNAME=	ncs
 PORTVERSION=	2.0.8
-PORTREVISION=	1
+PORTREVISION=	2
 CATEGORIES=	science parallel
 MASTER_SITES=	http://code-saturne.org/releases/
 
diff --git a/science/netcdf-fortran/Makefile b/science/netcdf-fortran/Makefile
index 674447f..59baaec 100644
--- a/science/netcdf-fortran/Makefile
+++ b/science/netcdf-fortran/Makefile
@@ -3,7 +3,7 @@
 
 PORTNAME=	netcdf-fortran
 PORTVERSION=	4.4.4
-PORTREVISION=	1
+PORTREVISION=	2
 DISTVERSIONPREFIX=	v
 CATEGORIES=	science
 
diff --git a/science/openkim/Makefile b/science/openkim/Makefile
index 29d66d6..7fdaa63 100644
--- a/science/openkim/Makefile
+++ b/science/openkim/Makefile
@@ -3,7 +3,7 @@
 
 PORTNAME=	openkim
 PORTVERSION=	1.1.1
-PORTREVISION=	3
+PORTREVISION=	4
 CATEGORIES=	science
 MASTER_SITES=	http://s3.openkim.org/openkim-api/
 DISTNAME=	${PORTNAME}-api-v${PORTVERSION}
diff --git a/science/pnetcdf/Makefile b/science/pnetcdf/Makefile
index d93dd1c..4eade23 100644
--- a/science/pnetcdf/Makefile
+++ b/science/pnetcdf/Makefile
@@ -3,6 +3,7 @@
 
 PORTNAME=	pnetcdf
 PORTVERSION=	1.8.1
+PORTREVISION=	1
 CATEGORIES=	science parallel
 MASTER_SITES=	http://cucis.ece.northwestern.edu/projects/PnetCDF/Release/ \
 		LOCAL/sunpoet
diff --git a/science/psychopy/Makefile b/science/psychopy/Makefile
index d2a3a57..43a6c14 100644
--- a/science/psychopy/Makefile
+++ b/science/psychopy/Makefile
@@ -3,7 +3,7 @@
 
 PORTNAME=	psychopy
 PORTVERSION=	1.83.04
-PORTREVISION=	1
+PORTREVISION=	2
 CATEGORIES=	science python
 
 MAINTAINER=	ports@FreeBSD.org
diff --git a/science/py-obspy/Makefile b/science/py-obspy/Makefile
index b1764f6..8fe8efd 100644
--- a/science/py-obspy/Makefile
+++ b/science/py-obspy/Makefile
@@ -3,6 +3,7 @@
 
 PORTNAME=	obspy
 PORTVERSION=	1.0.3
+PORTREVISION=	1
 CATEGORIES=	science python
 MASTER_SITES=	CHEESESHOP
 PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}
diff --git a/science/py-scikit-learn/Makefile b/science/py-scikit-learn/Makefile
index f50f378..e6e2851 100644
--- a/science/py-scikit-learn/Makefile
+++ b/science/py-scikit-learn/Makefile
@@ -3,7 +3,7 @@
 
 PORTNAME=	scikit-learn
 PORTVERSION=	0.17
-PORTREVISION=	1
+PORTREVISION=	2
 CATEGORIES=	science python
 MASTER_SITES=	CHEESESHOP
 PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}
diff --git a/science/py-scikit-sparse/Makefile b/science/py-scikit-sparse/Makefile
index b6e29ad..fb51989 100644
--- a/science/py-scikit-sparse/Makefile
+++ b/science/py-scikit-sparse/Makefile
@@ -3,7 +3,7 @@
 
 PORTNAME=	scikit-sparse
 PORTVERSION=	0.2
-PORTREVISION=	2
+PORTREVISION=	3
 CATEGORIES=	science python
 MASTER_SITES=	CHEESESHOP
 PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}
diff --git a/science/py-scipy/Makefile b/science/py-scipy/Makefile
index 4ae1e4d..b4a0262 100644
--- a/science/py-scipy/Makefile
+++ b/science/py-scipy/Makefile
@@ -3,6 +3,7 @@
 
 PORTNAME=	scipy
 PORTVERSION=	0.19.0
+PORTREVISION=	1
 CATEGORIES=	science python
 MASTER_SITES=	http://docs.scipy.org/doc/${DISTNAME}/:doc \
 		CHEESESHOP:source \
diff --git a/science/silo/Makefile b/science/silo/Makefile
index 6e45c8d..25ffc77 100644
--- a/science/silo/Makefile
+++ b/science/silo/Makefile
@@ -3,7 +3,7 @@
 
 PORTNAME=	silo
 PORTVERSION=	4.10.2
-PORTREVISION=	1
+PORTREVISION=	2
 DISTVERSIONSUFFIX=	-bsd
 CATEGORIES=	science
 MASTER_SITES=	http://wci.llnl.gov/content/assets/docs/simulation/computer-codes/${PORTNAME}/silo-${PORTVERSION}/
diff --git a/science/v_sim/Makefile b/science/v_sim/Makefile
index 69aab2c..521338c 100644
--- a/science/v_sim/Makefile
+++ b/science/v_sim/Makefile
@@ -3,7 +3,7 @@
 
 PORTNAME=	v_sim
 PORTVERSION=	3.7.2
-PORTREVISION=	2
+PORTREVISION=	3
 CATEGORIES=	science
 MASTER_SITES=	http://inac.cea.fr/L_Sim/V_Sim/download/