add flounder 0.32a

A quick way to visualize regularly spaced 4D data

22 files changed, 341 insertions, 0 deletions

diff --git a/science/Makefile b/science/Makefile
index 0c155f8..fd60fbe 100644
--- a/science/Makefile
+++ b/science/Makefile
@@ -5,6 +5,7 @@
     SUBDIR += chemtool
     SUBDIR += clhep
     SUBDIR += euler
+    SUBDIR += flounder
     SUBDIR += gdis
     SUBDIR += glens
     SUBDIR += libsvm
diff --git a/science/flounder/Makefile b/science/flounder/Makefile
new file mode 100644
index 0000000..5993ce3
--- /dev/null
+++ b/science/flounder/Makefile
@@ -0,0 +1,45 @@
+# ex:ts=8
+# Ports collection Makefile for:	flounder
+# Date created:			Oct 14, 2002
+# Whom:				ijliao
+#
+# $FreeBSD$
+#
+
+PORTNAME=	flounder
+PORTVERSION=	0.32a
+CATEGORIES=	science
+MASTER_SITES=	http://www.enel.ucalgary.ca/~vigmond/flounder/
+DISTNAME=	${PORTNAME}
+EXTRACT_SUFX=	.tgz
+
+MAINTAINER=	ports@FreeBSD.org
+
+LIB_DEPENDS=	fltk:${PORTSDIR}/x11-toolkits/fltk \
+		ungif:${PORTSDIR}/graphics/libungif \
+		png:${PORTSDIR}/graphics/png
+
+USE_MESA=	yes
+USE_LIBTOOL=	yes
+CONFIGURE_ENV=	CPPFLAGS="-I${LOCALBASE}/include -I${X11BASE}/include" \
+		LDFLAGS="-L${LOCALBASE}/lib -L${X11BASE}/lib ${PTHREAD_LIBS} -lstdc++"
+USE_GMAKE=	yes
+
+.if !defined(WITHOUT_AVIFILE)
+LIB_DEPENDS+=	aviplay:${PORTSDIR}/graphics/avifile
+CONFIGURE_ARGS+=	--enable-avifile
+.endif
+
+.if !defined(WITHOUT_PLOT)
+BUILD_DEPENDS+=	gnuplot:${PORTSDIR}/math/gnuplot
+RUN_DEPENDS+=	gnuplot:${PORTSDIR}/math/gnuplot
+CONFIGURE_ARGS+=	--enable-gnuplot
+.endif
+
+.if !defined(WITHOUT_GRACE)
+BUILD_DEPENDS+=	xmgrace:${PORTSDIR}/math/grace
+RUN_DEPENDS+=	xmgrace:${PORTSDIR}/math/grace
+CONFIGURE_ARGS+=	--enable-grace
+.endif
+
+.include <bsd.port.mk>
diff --git a/science/flounder/distinfo b/science/flounder/distinfo
new file mode 100644
index 0000000..1be5dc2
--- /dev/null
+++ b/science/flounder/distinfo
@@ -0,0 +1 @@
+MD5 (flounder.tgz) = 0c07ff0a044c7611eb6723c38c660ee6
diff --git a/science/flounder/files/patch-Colourscale.cc b/science/flounder/files/patch-Colourscale.cc
new file mode 100644
index 0000000..d5e7223
--- /dev/null
+++ b/science/flounder/files/patch-Colourscale.cc
@@ -0,0 +1,13 @@
+--- src/Colourscale.cc.orig	Tue Oct 15 00:12:17 2002
++++ src/Colourscale.cc	Tue Oct 15 00:15:30 2002
+@@ -18,7 +18,9 @@
+ */
+ #include "Colourscale.h"
+ 
+-Colourscale :: Colourscale( int ts=64, CScale_t tcs=CS_BL_RAINBOW )
++using namespace std;
++
++Colourscale :: Colourscale( int ts, CScale_t tcs )
+ {
+ 	n = 0;
+ 	mindat = 0;
diff --git a/science/flounder/files/patch-Fl_Gnuplot.cc b/science/flounder/files/patch-Fl_Gnuplot.cc
new file mode 100644
index 0000000..96a1e75
--- /dev/null
+++ b/science/flounder/files/patch-Fl_Gnuplot.cc
@@ -0,0 +1,26 @@
+--- src/Fl_Gnuplot.cc.orig	Tue Oct 15 03:59:41 2002
++++ src/Fl_Gnuplot.cc	Tue Oct 15 04:02:05 2002
+@@ -44,6 +44,7 @@
+ #include <sys/types.h>
+ #include <sys/stat.h>
+ #include <fcntl.h>
++#include <iostream>
+ 
+ #include "FL/fl_draw.H"
+ #include "FL/fl_ask.H"
+@@ -53,12 +54,14 @@
+ 
+ #define N_ENTRIES 8192
+ 
++using namespace std;
++
+ // enter a GNUP{LOT command to be executed 
+ void gnuplotcom_cb( Fl_Widget *w, void *p )
+ {
+ 	Fl_Gnuplot* graph=(Fl_Gnuplot*)w;
+ 
+-	char *s=fl_input("Enter Gnuplot commands seperated by ;",graph->command() );
++	char *s=(char*)fl_input("Enter Gnuplot commands seperated by ;",graph->command() );
+ 	if( s != NULL ) graph->command(s);
+ 	graph->window()->redraw();
+ }
diff --git a/science/flounder/files/patch-Fl_Gnuplot.h b/science/flounder/files/patch-Fl_Gnuplot.h
new file mode 100644
index 0000000..27c98a5
--- /dev/null
+++ b/science/flounder/files/patch-Fl_Gnuplot.h
@@ -0,0 +1,11 @@
+--- src/Fl_Gnuplot.h.orig	Tue Oct 15 04:00:20 2002
++++ src/Fl_Gnuplot.h	Tue Oct 15 04:00:37 2002
+@@ -47,6 +47,8 @@
+ #include "FL/Fl_Widget.H"
+ #include "FL/Fl_Box.H"
+ 
++using namespace std;
++
+ class Fl_Gnuplot : public Fl_Box {
+ private:
+   Fl_Gnuplot();
diff --git a/science/flounder/files/patch-GlAreaUI.cc b/science/flounder/files/patch-GlAreaUI.cc
new file mode 100644
index 0000000..def5dcf
--- /dev/null
+++ b/science/flounder/files/patch-GlAreaUI.cc
@@ -0,0 +1,41 @@
+--- src/GlAreaUI.cc.orig	Thu Mar 28 04:28:54 2002
++++ src/GlAreaUI.cc	Tue Oct 15 03:56:58 2002
+@@ -19,6 +19,7 @@
+ #include "../config.h"
+ #include "flguppy.h"
+ #include <algorithm>
++#include <iostream>
+ #ifdef HAVE_VALUES_H
+ #include <values.h>
+ #endif
+@@ -30,9 +31,11 @@
+ #include <avifile/videoencoder.h>
+ #include <avifile/avifile.h>
+ #include <avifile/aviplay.h>
+-#include <avifile/aviutil.h>
++#include <avifile/fourcc.h>
+ #endif
+ 
++using namespace std;
++
+ Fl_Font fontset[] = {
+ 	FL_HELVETICA, FL_HELVETICA_BOLD, 
+ 	FL_HELVETICA_ITALIC, FL_HELVETICA_BOLD_ITALIC,
+@@ -164,7 +167,7 @@
+ }
+ 
+ //update the settings to reflect the current model window
+-void GlAreaUI :: setcurrent( GLView *a, bool force=false )
++void GlAreaUI :: setcurrent( GLView *a, bool force )
+ {
+ 	if( a == curr_glwin && force==false ) return;
+ 
+@@ -435,7 +438,7 @@
+ inline int square( int a ){return a*a; }
+ 
+ // make gif images
+-void GlAreaUI :: movie( bool single=false )
++void GlAreaUI :: movie( bool single )
+ {
+ 	char *fn;
+ 	if( single == true )
diff --git a/science/flounder/files/patch-Glarea.cc b/science/flounder/files/patch-Glarea.cc
new file mode 100644
index 0000000..4e4673c
--- /dev/null
+++ b/science/flounder/files/patch-Glarea.cc
@@ -0,0 +1,29 @@
+--- src/Glarea.cc.orig	Tue Oct 15 01:18:55 2002
++++ src/Glarea.cc	Tue Oct 15 01:22:10 2002
+@@ -1064,7 +1064,7 @@
+ 
+ 
+ // Constructor for Glarea class
+-Glarea::Glarea (int X, int Y, int W, int H, const char *L=0):
++Glarea::Glarea (int X, int Y, int W, int H, const char *L):
+  Fl_Gl_Window(X, Y, W, H, L)
+ {
+ 	maxdim          = 0;
+@@ -1695,7 +1695,7 @@
+ }
+ 
+ // update the tableau user interface widget
+-void Glarea :: tableau( TableauUI *tb, bool update=false ) 
++void Glarea :: tableau( TableauUI *tb, bool update ) 
+ {
+ 	if( tb->window->visible() == false ) return;
+ 	
+@@ -1917,7 +1917,7 @@
+ // set update to return the values into the vars, otherwise
+ // set the variables from the supplied parameters
+ void Glarea :: contours( bool& con, bool& dat, int& nc, double& st, double& inc, 
+-									bool update=false )
++									bool update )
+ {
+ 	if( update == false ) {
+ 		showcontour = con;
diff --git a/science/flounder/files/patch-Glarea.h b/science/flounder/files/patch-Glarea.h
new file mode 100644
index 0000000..425cb28
--- /dev/null
+++ b/science/flounder/files/patch-Glarea.h
@@ -0,0 +1,11 @@
+--- src/Glarea.h.orig	Tue Oct 15 01:13:37 2002
++++ src/Glarea.h	Tue Oct 15 01:15:44 2002
+@@ -43,6 +43,8 @@
+ #include "RenderEPS.h"	
+ #include "IGBheader.h"
+ 
++using namespace std;
++
+ typedef enum dispdim{DISP_XY, DISP_YZ, DISP_ZX, 
+ 								DISP_YX, DISP_ZY, DISP_XZ} DispDim; 
+ typedef enum bbvalue{ BBXM, BBXP, BBYM, BBYP, BBZM, BBZP } BBvalue;
diff --git a/science/flounder/files/patch-IGBheader.cc b/science/flounder/files/patch-IGBheader.cc
new file mode 100644
index 0000000..102c34e
--- /dev/null
+++ b/science/flounder/files/patch-IGBheader.cc
@@ -0,0 +1,13 @@
+--- src/IGBheader.cc.orig	Tue Oct 15 02:15:19 2002
++++ src/IGBheader.cc	Tue Oct 15 02:15:44 2002
+@@ -17,7 +17,10 @@
+     Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA
+ */
+ #include<stdlib.h>
++#include <iostream>
+ #include "IGBheader.h"
++
++using namespace std;
+ 
+ /* -------------- Bits de statut pour Header_Read et Header_Write ------ */
+ 
diff --git a/science/flounder/files/patch-Myslider.cc b/science/flounder/files/patch-Myslider.cc
new file mode 100644
index 0000000..6fbaaf3
--- /dev/null
+++ b/science/flounder/files/patch-Myslider.cc
@@ -0,0 +1,11 @@
+--- src/Myslider.cc.orig	Tue Oct 15 02:08:12 2002
++++ src/Myslider.cc	Tue Oct 15 02:08:22 2002
+@@ -21,7 +21,7 @@
+ 
+ const int w_valout = 40;
+ 
+-Myslider :: Myslider( int X, int Y, int W, int H, char *L=0): 
++Myslider :: Myslider( int X, int Y, int W, int H, char *L): 
+ 	Fl_Group(X,Y,W,H,L),
+ 	valout(X,Y,w_valout,H),
+ 	slider( X+w_valout, Y, W-w_valout, H )
diff --git a/science/flounder/files/patch-PlotWin.cc b/science/flounder/files/patch-PlotWin.cc
new file mode 100644
index 0000000..7ed11d9
--- /dev/null
+++ b/science/flounder/files/patch-PlotWin.cc
@@ -0,0 +1,11 @@
+--- src/PlotWin.cc.orig	Tue Oct 15 02:09:34 2002
++++ src/PlotWin.cc	Tue Oct 15 02:10:22 2002
+@@ -21,7 +21,7 @@
+ #include <FL/Fl_Widget.H>
+ 
+ // set the data to plot
+-void PlotWin :: set_data( int n, double *d, int t=-1, double *xd=NULL )
++void PlotWin :: set_data( int n, double *d, int t, double *xd )
+ {
+ 	if( n != datasize ) {
+ 		delete[] xv;
diff --git a/science/flounder/files/patch-RenderEPS.cc b/science/flounder/files/patch-RenderEPS.cc
new file mode 100644
index 0000000..3ec7aca
--- /dev/null
+++ b/science/flounder/files/patch-RenderEPS.cc
@@ -0,0 +1,11 @@
+--- src/RenderEPS.cc.orig	Tue Oct 15 02:11:32 2002
++++ src/RenderEPS.cc	Tue Oct 15 02:11:44 2002
+@@ -48,7 +48,7 @@
+ 
+ 
+ // constructor
+-RenderEPS :: RenderEPS( char *fn, int sz=FB_BUFSIZE )
++RenderEPS :: RenderEPS( char *fn, int sz )
+ {
+ 	bufsize = sz;
+ 	feedbackBuffer = (GLfloat *)malloc( bufsize*sizeof(GLfloat) );
diff --git a/science/flounder/files/patch-RenderEPS.h b/science/flounder/files/patch-RenderEPS.h
new file mode 100644
index 0000000..b81b62a
--- /dev/null
+++ b/science/flounder/files/patch-RenderEPS.h
@@ -0,0 +1,11 @@
+--- src/RenderEPS.h.orig	Tue Oct 15 00:35:11 2002
++++ src/RenderEPS.h	Tue Oct 15 00:35:26 2002
+@@ -23,6 +23,8 @@
+ #include <GL/gl.h>
+ #include <string>
+ 
++using namespace std;
++
+ #define FB_BUFSIZE 1000000
+ 
+ class RenderEPS {
diff --git a/science/flounder/files/patch-SubsampUI.cc b/science/flounder/files/patch-SubsampUI.cc
new file mode 100644
index 0000000..3a293f5
--- /dev/null
+++ b/science/flounder/files/patch-SubsampUI.cc
@@ -0,0 +1,11 @@
+--- src/SubsampUI.cc.orig	Tue Oct 15 02:14:13 2002
++++ src/SubsampUI.cc	Tue Oct 15 02:14:19 2002
+@@ -28,7 +28,7 @@
+ 	((Strideslide *)p)->update();
+ }
+ 
+-Strideslide :: Strideslide( int X, int Y, int W, int H, char *L=0): 
++Strideslide :: Strideslide( int X, int Y, int W, int H, char *L): 
+     Fl_Group(X,Y,W,H,L),
+     slider( X, Y, W-w_valout-w_sep-w_samplabel, H ),
+     valout(X+W-w_valout-w_samplabel,Y,w_valout, H ),
diff --git a/science/flounder/files/patch-flguppy.cc b/science/flounder/files/patch-flguppy.cc
new file mode 100644
index 0000000..4d1c59b
--- /dev/null
+++ b/science/flounder/files/patch-flguppy.cc
@@ -0,0 +1,20 @@
+--- src/flguppy.cc.orig	Tue Oct 15 01:04:33 2002
++++ src/flguppy.cc	Tue Oct 15 01:05:24 2002
+@@ -20,6 +20,8 @@
+ 
+ #include "flguppy.h"
+ 
++using namespace std;
++
+ inline void TableauUI::cb_window_i(Fl_Window*, void*) {
+   closebutton->do_callback();
+ }
+@@ -322,7 +324,7 @@
+ }
+ class GlAreaUI;
+ 
+-GLView::GLView(GlAreaUI *g, char *fn, void *d=NULL) {
++GLView::GLView(GlAreaUI *g, char *fn, void *d) {
+   Fl_Double_Window* w;
+   { Fl_Double_Window* o = window = new Fl_Double_Window(365, 355);
+     w = o;
diff --git a/science/flounder/files/patch-flguppy.h b/science/flounder/files/patch-flguppy.h
new file mode 100644
index 0000000..969c63b
--- /dev/null
+++ b/science/flounder/files/patch-flguppy.h
@@ -0,0 +1,11 @@
+--- src/flguppy.h.orig	Tue Oct 15 01:03:47 2002
++++ src/flguppy.h	Tue Oct 15 01:03:57 2002
+@@ -31,6 +31,8 @@
+ #include <FL/Fl_Button.H>
+ #include <FL/Fl_Value_Output.H>
+ 
++using namespace std;
++
+ class TableauUI {
+ public:
+   void *widg;
diff --git a/science/flounder/files/patch-igbhead.cc b/science/flounder/files/patch-igbhead.cc
new file mode 100644
index 0000000..1d0683b
--- /dev/null
+++ b/science/flounder/files/patch-igbhead.cc
@@ -0,0 +1,12 @@
+--- utils/igbhead.cc.orig	Tue Oct 15 02:20:12 2002
++++ utils/igbhead.cc	Tue Oct 15 02:20:30 2002
+@@ -11,6 +11,9 @@
+ #include<string>
+ #include "IGBheader.h"
+ #include "cmdline.h"
++#include <iostream>
++
++using namespace std;
+ 
+ void output_header( IGBheader* );
+ 
diff --git a/science/flounder/files/patch-isosurf.cc b/science/flounder/files/patch-isosurf.cc
new file mode 100644
index 0000000..d8fd530
--- /dev/null
+++ b/science/flounder/files/patch-isosurf.cc
@@ -0,0 +1,28 @@
+--- src/isosurf.cc.orig	Tue Oct 15 02:05:22 2002
++++ src/isosurf.cc	Tue Oct 15 02:07:26 2002
+@@ -138,7 +138,7 @@
+  * 						 N.B. the array is subscripted as data[z][y][x]
+  */
+ void
+-Isosurf::alloc_3d_data_array(int nx, int ny, int nz, float *dp = NULL)
++Isosurf::alloc_3d_data_array(int nx, int ny, int nz, float *dp)
+ {
+     register int i, j;
+ 
+@@ -550,7 +550,7 @@
+ int dfprintf(int fd, int i);
+ /**************************************************************/
+ 
+-int perr(char *s, int a1=0, int a2=0, int a3=0, int a4=0, int a5=0, int a6=0)
++int perr(char *s, int a1, int a2, int a3, int a4, int a5, int a6)
+ {
+     fprintf(stderr, "%s: ", Progname);
+     fprintf(stderr, s, a1, a2, a3, a4, a5, a6);
+@@ -2241,7 +2241,6 @@
+ * the University of Illinois at Urbana-Champaign.
+ */
+ 
+-#include <malloc.h>
+ 
+ /********************************************************/
+ float    *
diff --git a/science/flounder/pkg-comment b/science/flounder/pkg-comment
new file mode 100644
index 0000000..304678a
--- /dev/null
+++ b/science/flounder/pkg-comment
@@ -0,0 +1 @@
+A quick way to visualize regularly spaced 4D data
diff --git a/science/flounder/pkg-descr b/science/flounder/pkg-descr
new file mode 100644
index 0000000..a027e1b
--- /dev/null
+++ b/science/flounder/pkg-descr
@@ -0,0 +1,21 @@
+Flounder is a quick way to visualize regularly spaced 4D data, i.e., a data
+set that is a function of x, y, z, and time.
+
+Features
+   - Animation
+   - 4D (x,y,z,t) display
+   - Display multiple data files linked by time
+   - 2D slices along prinicpal axes
+   - Adjustable colour scales and quantization levels
+   - Contour plots
+   - Isosurfaces
+   - 3D surface rendering
+   - 3D solid rendering
+   - Save images as gif, png or eps
+   - Save movies as animated gif or avi
+   - Display time series at a spatial location with zoom
+   - Vertical and horizontal profiles
+   - Tableau plots
+   - Adjustable colours and font
+
+WWW: http://www.enel.ucalgary.ca/~vigmond/flounder/
diff --git a/science/flounder/pkg-plist b/science/flounder/pkg-plist
new file mode 100644
index 0000000..50843b6
--- /dev/null
+++ b/science/flounder/pkg-plist
@@ -0,0 +1,2 @@
+bin/flounder
+bin/igbhead