diff options
| author | ijliao <ijliao@FreeBSD.org> | 2003-10-29 03:39:15 +0000 |
|---|---|---|
| committer | ijliao <ijliao@FreeBSD.org> | 2003-10-29 03:39:15 +0000 |
| commit | 60d0dcce70a56a049085abc0973861d93f089636 (patch) | |
| tree | 832fe81dd66d3346233371930cd5df9ae63cc96c /math | |
| parent | 5649a857e6b68447a60d4dd6e350c82be9c43442 (diff) | |
| download | FreeBSD-ports-60d0dcce70a56a049085abc0973861d93f089636.zip FreeBSD-ports-60d0dcce70a56a049085abc0973861d93f089636.tar.gz | |
upgrade to 1.7.1
PR: 57801
Submitted by: maintainer
Diffstat (limited to 'math')
| -rw-r--r-- | math/R-letter/Makefile | 9 | ||||
| -rw-r--r-- | math/R-letter/distinfo | 2 | ||||
| -rw-r--r-- | math/R-letter/pkg-plist | 756 | ||||
| -rw-r--r-- | math/R-project/Makefile | 9 | ||||
| -rw-r--r-- | math/R-project/distinfo | 2 | ||||
| -rw-r--r-- | math/R-project/pkg-plist | 756 | ||||
| -rw-r--r-- | math/R/Makefile | 9 | ||||
| -rw-r--r-- | math/R/distinfo | 2 | ||||
| -rw-r--r-- | math/R/pkg-plist | 756 |
9 files changed, 921 insertions, 1380 deletions
diff --git a/math/R-letter/Makefile b/math/R-letter/Makefile index ed7f5be..139ca8a 100644 --- a/math/R-letter/Makefile +++ b/math/R-letter/Makefile @@ -6,7 +6,7 @@ # PORTNAME= R -PORTVERSION= 1.7.0 +PORTVERSION= 1.7.1 CATEGORIES= math MASTER_SITES= http://cran.r-project.org/src/base/ \ ftp://cran.r-project.org/pub/R/src/base/ \ @@ -26,13 +26,18 @@ MAINTAINER= vangyzen@stat.duke.edu COMMENT= A language for statistical computing and graphics LIB_DEPENDS= tcl84:${PORTSDIR}/lang/tcl84 \ - tk84:${PORTSDIR}/x11-toolkits/tk84 + tk84:${PORTSDIR}/x11-toolkits/tk84 \ + jpeg.9:${PORTSDIR}/graphics/jpeg \ + png.5:${PORTSDIR}/graphics/png \ + pcre.0:${PORTSDIR}/devel/pcre \ + lapack.3:${PORTSDIR}/math/lapack GNU_CONFIGURE= yes USE_XLIB= yes USE_PERL5= yes CONFIGURE_ENV= R_PAPERSIZE=${PAPERSIZE} \ INSTALL_DATA="${INSTALL} ${COPY} ${_SHROWNGRP} -m 644" +CONFIGURE_ARGS= --with-lapack PAPERSIZE?= letter .if ${PAPERSIZE} != letter && ${PAPERSIZE} != a4 diff --git a/math/R-letter/distinfo b/math/R-letter/distinfo index 63db5a7..a438e43 100644 --- a/math/R-letter/distinfo +++ b/math/R-letter/distinfo @@ -1 +1 @@ -MD5 (R-1.7.0.tgz) = 292dbe4dc47e6b492ff72a62471654ca +MD5 (R-1.7.1.tgz) = 833c2a9a62818211f2f9f0353ecd9bbd diff --git a/math/R-letter/pkg-plist b/math/R-letter/pkg-plist index 983fdcb..fff8453 100644 --- a/math/R-letter/pkg-plist +++ b/math/R-letter/pkg-plist @@ -106,7 +106,6 @@ lib/R/bin/build lib/R/bin/check lib/R/bin/config lib/R/bin/f77 -lib/R/bin/libRlapack.so lib/R/bin/libtool lib/R/bin/pager lib/R/bin/texi2dvi @@ -492,6 +491,7 @@ lib/R/library/MASS/help/lh lib/R/library/MASS/help/lm.gls lib/R/library/MASS/help/lm.ridge lib/R/library/MASS/help/loglm +lib/R/library/MASS/help/loglm1 lib/R/library/MASS/help/logtrans lib/R/library/MASS/help/mammals lib/R/library/MASS/help/mca @@ -650,6 +650,7 @@ lib/R/library/MASS/html/lh.html lib/R/library/MASS/html/lm.gls.html lib/R/library/MASS/html/lm.ridge.html lib/R/library/MASS/html/loglm.html +lib/R/library/MASS/html/loglm1.html lib/R/library/MASS/html/logtrans.html lib/R/library/MASS/html/mammals.html lib/R/library/MASS/html/mca.html @@ -807,6 +808,7 @@ lib/R/library/MASS/latex/lh.tex lib/R/library/MASS/latex/lm.gls.tex lib/R/library/MASS/latex/lm.ridge.tex lib/R/library/MASS/latex/loglm.tex +lib/R/library/MASS/latex/loglm1.tex lib/R/library/MASS/latex/logtrans.tex lib/R/library/MASS/latex/mammals.tex lib/R/library/MASS/latex/mca.tex @@ -1157,6 +1159,7 @@ lib/R/library/base/R-ex/function.R lib/R/library/base/R-ex/gc.R lib/R/library/base/R-ex/gc.time.R lib/R/library/base/R-ex/get.R +lib/R/library/base/R-ex/getAnywhere.R lib/R/library/base/R-ex/getFromNamespace.R lib/R/library/base/R-ex/getNativeSymbolInfo.R lib/R/library/base/R-ex/getS3method.R @@ -1244,7 +1247,7 @@ lib/R/library/base/R-ex/match.fun.R lib/R/library/base/R-ex/matmult.R lib/R/library/base/R-ex/matplot.R lib/R/library/base/R-ex/matrix.R -lib/R/library/base/R-ex/max.col.R +lib/R/library/base/R-ex/maxCol.R lib/R/library/base/R-ex/mean.R lib/R/library/base/R-ex/median.R lib/R/library/base/R-ex/memory.profile.R @@ -1380,6 +1383,7 @@ lib/R/library/base/R-ex/rowsum.R lib/R/library/base/R-ex/rug.R lib/R/library/base/R-ex/sample.R lib/R/library/base/R-ex/save.R +lib/R/library/base/R-ex/savehistory.R lib/R/library/base/R-ex/scale.R lib/R/library/base/R-ex/scan.R lib/R/library/base/R-ex/screen.R @@ -1841,6 +1845,7 @@ lib/R/library/base/help/gc lib/R/library/base/help/gc.time lib/R/library/base/help/gctorture lib/R/library/base/help/get +lib/R/library/base/help/getAnywhere lib/R/library/base/help/getFromNamespace lib/R/library/base/help/getNativeSymbolInfo lib/R/library/base/help/getS3method @@ -1944,7 +1949,7 @@ lib/R/library/base/help/match.fun lib/R/library/base/help/matmult lib/R/library/base/help/matplot lib/R/library/base/help/matrix -lib/R/library/base/help/max.col +lib/R/library/base/help/maxCol lib/R/library/base/help/mean lib/R/library/base/help/median lib/R/library/base/help/memory.profile @@ -2522,6 +2527,7 @@ lib/R/library/base/html/gc.html lib/R/library/base/html/gc.time.html lib/R/library/base/html/gctorture.html lib/R/library/base/html/get.html +lib/R/library/base/html/getAnywhere.html lib/R/library/base/html/getFromNamespace.html lib/R/library/base/html/getNativeSymbolInfo.html lib/R/library/base/html/getS3method.html @@ -2625,7 +2631,7 @@ lib/R/library/base/html/match.html lib/R/library/base/html/matmult.html lib/R/library/base/html/matplot.html lib/R/library/base/html/matrix.html -lib/R/library/base/html/max.col.html +lib/R/library/base/html/maxCol.html lib/R/library/base/html/mean.html lib/R/library/base/html/median.html lib/R/library/base/html/memory.profile.html @@ -3202,6 +3208,7 @@ lib/R/library/base/latex/gc.tex lib/R/library/base/latex/gc.time.tex lib/R/library/base/latex/gctorture.tex lib/R/library/base/latex/get.tex +lib/R/library/base/latex/getAnywhere.tex lib/R/library/base/latex/getFromNamespace.tex lib/R/library/base/latex/getNativeSymbolInfo.tex lib/R/library/base/latex/getS3method.tex @@ -3305,7 +3312,7 @@ lib/R/library/base/latex/match.tex lib/R/library/base/latex/matmult.tex lib/R/library/base/latex/matplot.tex lib/R/library/base/latex/matrix.tex -lib/R/library/base/latex/max.col.tex +lib/R/library/base/latex/maxCol.tex lib/R/library/base/latex/mean.tex lib/R/library/base/latex/median.tex lib/R/library/base/latex/memory.profile.tex @@ -4040,6 +4047,7 @@ lib/R/library/cluster/R-ex/flower.R lib/R/library/cluster/R-ex/lower.to.upper.tri.inds.R lib/R/library/cluster/R-ex/mona.R lib/R/library/cluster/R-ex/pam.R +lib/R/library/cluster/R-ex/pam.object.R lib/R/library/cluster/R-ex/plot.agnes.R lib/R/library/cluster/R-ex/plot.diana.R lib/R/library/cluster/R-ex/plot.partition.R @@ -5267,6 +5275,7 @@ lib/R/library/nlme/DESCRIPTION lib/R/library/nlme/INDEX lib/R/library/nlme/Meta/Rd.rds lib/R/library/nlme/Meta/data.rds +lib/R/library/nlme/NAMESPACE lib/R/library/nlme/R-ex/ACF.R lib/R/library/nlme/R-ex/ACF.gls.R lib/R/library/nlme/R-ex/ACF.lme.R @@ -5354,14 +5363,10 @@ lib/R/library/nlme/R-ex/augPred.R lib/R/library/nlme/R-ex/balancedGrouped.R lib/R/library/nlme/R-ex/bdf.R lib/R/library/nlme/R-ex/coef.corStruct.R -lib/R/library/nlme/R-ex/coef.gls.R lib/R/library/nlme/R-ex/coef.gnls.R lib/R/library/nlme/R-ex/coef.lmList.R lib/R/library/nlme/R-ex/coef.lme.R lib/R/library/nlme/R-ex/coef.modelStruct.R -lib/R/library/nlme/R-ex/coef.pdCompSymm.R -lib/R/library/nlme/R-ex/coef.pdDiag.R -lib/R/library/nlme/R-ex/coef.pdIdent.R lib/R/library/nlme/R-ex/coef.pdMat.R lib/R/library/nlme/R-ex/coef.reStruct.R lib/R/library/nlme/R-ex/coef.varFunc.R @@ -5390,26 +5395,13 @@ lib/R/library/nlme/R-ex/corSpher.R lib/R/library/nlme/R-ex/corSymm.R lib/R/library/nlme/R-ex/ergoStool.R lib/R/library/nlme/R-ex/fdHess.R -lib/R/library/nlme/R-ex/fitted.gls.R -lib/R/library/nlme/R-ex/fitted.gnls.R lib/R/library/nlme/R-ex/fitted.lmList.R lib/R/library/nlme/R-ex/fitted.lme.R lib/R/library/nlme/R-ex/fixed.effects.R lib/R/library/nlme/R-ex/fixef.lmList.R -lib/R/library/nlme/R-ex/fixef.lme.R -lib/R/library/nlme/R-ex/formula.corStruct.R -lib/R/library/nlme/R-ex/formula.gls.R -lib/R/library/nlme/R-ex/formula.gnls.R -lib/R/library/nlme/R-ex/formula.groupedData.R -lib/R/library/nlme/R-ex/formula.lmList.R -lib/R/library/nlme/R-ex/formula.lme.R -lib/R/library/nlme/R-ex/formula.modelStruct.R -lib/R/library/nlme/R-ex/formula.nlme.R -lib/R/library/nlme/R-ex/formula.nlsList.R lib/R/library/nlme/R-ex/formula.pdBlocked.R lib/R/library/nlme/R-ex/formula.pdMat.R lib/R/library/nlme/R-ex/formula.reStruct.R -lib/R/library/nlme/R-ex/formula.varFunc.R lib/R/library/nlme/R-ex/gapply.R lib/R/library/nlme/R-ex/getCovariate.R lib/R/library/nlme/R-ex/getCovariate.corStruct.R @@ -5429,10 +5421,6 @@ lib/R/library/nlme/R-ex/getGroups.lme.R lib/R/library/nlme/R-ex/getGroups.varFunc.R lib/R/library/nlme/R-ex/getGroupsFormula.R lib/R/library/nlme/R-ex/getResponse.R -lib/R/library/nlme/R-ex/getResponse.data.frame.R -lib/R/library/nlme/R-ex/getResponse.gls.R -lib/R/library/nlme/R-ex/getResponse.lmList.R -lib/R/library/nlme/R-ex/getResponse.lme.R lib/R/library/nlme/R-ex/getResponseFormula.R lib/R/library/nlme/R-ex/getVarCov.R lib/R/library/nlme/R-ex/gls.R @@ -5449,7 +5437,6 @@ lib/R/library/nlme/R-ex/intervals.lmList.R lib/R/library/nlme/R-ex/intervals.lme.R lib/R/library/nlme/R-ex/isBalanced.R lib/R/library/nlme/R-ex/isInitialized.R -lib/R/library/nlme/R-ex/isInitialized.reStruct.R lib/R/library/nlme/R-ex/lmList.R lib/R/library/nlme/R-ex/lmList.groupedData.R lib/R/library/nlme/R-ex/lme.R @@ -5462,7 +5449,6 @@ lib/R/library/nlme/R-ex/logDet.corStruct.R lib/R/library/nlme/R-ex/logDet.pdMat.R lib/R/library/nlme/R-ex/logDet.reStruct.R lib/R/library/nlme/R-ex/logLik.corStruct.R -lib/R/library/nlme/R-ex/logLik.gls.R lib/R/library/nlme/R-ex/logLik.gnls.R lib/R/library/nlme/R-ex/logLik.lmList.R lib/R/library/nlme/R-ex/logLik.lme.R @@ -5513,24 +5499,8 @@ lib/R/library/nlme/R-ex/predict.gnls.R lib/R/library/nlme/R-ex/predict.lmList.R lib/R/library/nlme/R-ex/predict.lme.R lib/R/library/nlme/R-ex/predict.nlme.R -lib/R/library/nlme/R-ex/print.anova.lme.R -lib/R/library/nlme/R-ex/print.corStruct.R -lib/R/library/nlme/R-ex/print.gls.R -lib/R/library/nlme/R-ex/print.groupedData.R -lib/R/library/nlme/R-ex/print.lmList.R -lib/R/library/nlme/R-ex/print.lme.R -lib/R/library/nlme/R-ex/print.modelStruct.R -lib/R/library/nlme/R-ex/print.pdMat.R -lib/R/library/nlme/R-ex/print.reStruct.R -lib/R/library/nlme/R-ex/print.summary.corStruct.R -lib/R/library/nlme/R-ex/print.summary.gls.R -lib/R/library/nlme/R-ex/print.summary.lmList.R -lib/R/library/nlme/R-ex/print.summary.lme.R -lib/R/library/nlme/R-ex/print.summary.modelStruct.R lib/R/library/nlme/R-ex/print.summary.pdMat.R -lib/R/library/nlme/R-ex/print.summary.varFunc.R lib/R/library/nlme/R-ex/print.varFunc.R -lib/R/library/nlme/R-ex/pruneLevels.R lib/R/library/nlme/R-ex/qqnorm.gls.R lib/R/library/nlme/R-ex/qqnorm.lme.R lib/R/library/nlme/R-ex/quinModel.R @@ -5638,10 +5608,6 @@ lib/R/library/nlme/help/Initialize.lmeStruct lib/R/library/nlme/help/Initialize.reStruct lib/R/library/nlme/help/Initialize.varFunc lib/R/library/nlme/help/LDEsysMat -lib/R/library/nlme/help/MEEM -lib/R/library/nlme/help/MEdecomp -lib/R/library/nlme/help/MEdims -lib/R/library/nlme/help/MEestimate lib/R/library/nlme/help/Machines lib/R/library/nlme/help/MathAchSchool lib/R/library/nlme/help/MathAchieve @@ -5700,14 +5666,10 @@ lib/R/library/nlme/help/augPred lib/R/library/nlme/help/balancedGrouped lib/R/library/nlme/help/bdf lib/R/library/nlme/help/coef.corStruct -lib/R/library/nlme/help/coef.gls lib/R/library/nlme/help/coef.gnls lib/R/library/nlme/help/coef.lmList lib/R/library/nlme/help/coef.lme lib/R/library/nlme/help/coef.modelStruct -lib/R/library/nlme/help/coef.pdCompSymm -lib/R/library/nlme/help/coef.pdDiag -lib/R/library/nlme/help/coef.pdIdent lib/R/library/nlme/help/coef.pdMat lib/R/library/nlme/help/coef.reStruct lib/R/library/nlme/help/coef.varFunc @@ -5737,9 +5699,7 @@ lib/R/library/nlme/help/corSpher lib/R/library/nlme/help/corSymm lib/R/library/nlme/help/ergoStool lib/R/library/nlme/help/fdHess -lib/R/library/nlme/help/fitted.gls lib/R/library/nlme/help/fitted.glsStruct -lib/R/library/nlme/help/fitted.gnls lib/R/library/nlme/help/fitted.gnlsStruct lib/R/library/nlme/help/fitted.lmList lib/R/library/nlme/help/fitted.lme @@ -5747,20 +5707,9 @@ lib/R/library/nlme/help/fitted.lmeStruct lib/R/library/nlme/help/fitted.nlmeStruct lib/R/library/nlme/help/fixed.effects lib/R/library/nlme/help/fixef.lmList -lib/R/library/nlme/help/fixef.lme -lib/R/library/nlme/help/formula.corStruct -lib/R/library/nlme/help/formula.gls -lib/R/library/nlme/help/formula.gnls -lib/R/library/nlme/help/formula.groupedData -lib/R/library/nlme/help/formula.lmList -lib/R/library/nlme/help/formula.lme -lib/R/library/nlme/help/formula.modelStruct -lib/R/library/nlme/help/formula.nlme -lib/R/library/nlme/help/formula.nlsList lib/R/library/nlme/help/formula.pdBlocked lib/R/library/nlme/help/formula.pdMat lib/R/library/nlme/help/formula.reStruct -lib/R/library/nlme/help/formula.varFunc lib/R/library/nlme/help/gapply lib/R/library/nlme/help/getCovariate lib/R/library/nlme/help/getCovariate.corStruct @@ -5780,10 +5729,6 @@ lib/R/library/nlme/help/getGroups.lme lib/R/library/nlme/help/getGroups.varFunc lib/R/library/nlme/help/getGroupsFormula lib/R/library/nlme/help/getResponse -lib/R/library/nlme/help/getResponse.data.frame -lib/R/library/nlme/help/getResponse.gls -lib/R/library/nlme/help/getResponse.lmList -lib/R/library/nlme/help/getResponse.lme lib/R/library/nlme/help/getResponseFormula lib/R/library/nlme/help/getVarCov lib/R/library/nlme/help/gls @@ -5802,7 +5747,6 @@ lib/R/library/nlme/help/intervals.lmList lib/R/library/nlme/help/intervals.lme lib/R/library/nlme/help/isBalanced lib/R/library/nlme/help/isInitialized -lib/R/library/nlme/help/isInitialized.reStruct lib/R/library/nlme/help/lmList lib/R/library/nlme/help/lmList.groupedData lib/R/library/nlme/help/lme @@ -5817,7 +5761,6 @@ lib/R/library/nlme/help/logDet.corStruct lib/R/library/nlme/help/logDet.pdMat lib/R/library/nlme/help/logDet.reStruct lib/R/library/nlme/help/logLik.corStruct -lib/R/library/nlme/help/logLik.gls lib/R/library/nlme/help/logLik.glsStruct lib/R/library/nlme/help/logLik.gnls lib/R/library/nlme/help/logLik.gnlsStruct @@ -5830,7 +5773,6 @@ lib/R/library/nlme/help/model.matrix.reStruct lib/R/library/nlme/help/needUpdate lib/R/library/nlme/help/needUpdate.modelStruct lib/R/library/nlme/help/nlme -lib/R/library/nlme/help/nlme-internal lib/R/library/nlme/help/nlme.nlsList lib/R/library/nlme/help/nlmeControl lib/R/library/nlme/help/nlmeObject @@ -5875,24 +5817,8 @@ lib/R/library/nlme/help/predict.gnls lib/R/library/nlme/help/predict.lmList lib/R/library/nlme/help/predict.lme lib/R/library/nlme/help/predict.nlme -lib/R/library/nlme/help/print.anova.lme -lib/R/library/nlme/help/print.corStruct -lib/R/library/nlme/help/print.gls -lib/R/library/nlme/help/print.groupedData -lib/R/library/nlme/help/print.lmList -lib/R/library/nlme/help/print.lme -lib/R/library/nlme/help/print.modelStruct -lib/R/library/nlme/help/print.pdMat -lib/R/library/nlme/help/print.reStruct -lib/R/library/nlme/help/print.summary.corStruct -lib/R/library/nlme/help/print.summary.gls -lib/R/library/nlme/help/print.summary.lmList -lib/R/library/nlme/help/print.summary.lme -lib/R/library/nlme/help/print.summary.modelStruct lib/R/library/nlme/help/print.summary.pdMat -lib/R/library/nlme/help/print.summary.varFunc lib/R/library/nlme/help/print.varFunc -lib/R/library/nlme/help/pruneLevels lib/R/library/nlme/help/qqnorm.gls lib/R/library/nlme/help/qqnorm.lme lib/R/library/nlme/help/quinModel @@ -5970,10 +5896,6 @@ lib/R/library/nlme/html/Initialize.lmeStruct.html lib/R/library/nlme/html/Initialize.reStruct.html lib/R/library/nlme/html/Initialize.varFunc.html lib/R/library/nlme/html/LDEsysMat.html -lib/R/library/nlme/html/MEEM.html -lib/R/library/nlme/html/MEdecomp.html -lib/R/library/nlme/html/MEdims.html -lib/R/library/nlme/html/MEestimate.html lib/R/library/nlme/html/Machines.html lib/R/library/nlme/html/MathAchSchool.html lib/R/library/nlme/html/MathAchieve.html @@ -6032,14 +5954,10 @@ lib/R/library/nlme/html/augPred.html lib/R/library/nlme/html/balancedGrouped.html lib/R/library/nlme/html/bdf.html lib/R/library/nlme/html/coef.corStruct.html -lib/R/library/nlme/html/coef.gls.html lib/R/library/nlme/html/coef.gnls.html lib/R/library/nlme/html/coef.lmList.html lib/R/library/nlme/html/coef.lme.html lib/R/library/nlme/html/coef.modelStruct.html -lib/R/library/nlme/html/coef.pdCompSymm.html -lib/R/library/nlme/html/coef.pdDiag.html -lib/R/library/nlme/html/coef.pdIdent.html lib/R/library/nlme/html/coef.pdMat.html lib/R/library/nlme/html/coef.reStruct.html lib/R/library/nlme/html/coef.varFunc.html @@ -6069,9 +5987,7 @@ lib/R/library/nlme/html/corSpher.html lib/R/library/nlme/html/corSymm.html lib/R/library/nlme/html/ergoStool.html lib/R/library/nlme/html/fdHess.html -lib/R/library/nlme/html/fitted.gls.html lib/R/library/nlme/html/fitted.glsStruct.html -lib/R/library/nlme/html/fitted.gnls.html lib/R/library/nlme/html/fitted.gnlsStruct.html lib/R/library/nlme/html/fitted.lmList.html lib/R/library/nlme/html/fitted.lme.html @@ -6079,20 +5995,9 @@ lib/R/library/nlme/html/fitted.lmeStruct.html lib/R/library/nlme/html/fitted.nlmeStruct.html lib/R/library/nlme/html/fixed.effects.html lib/R/library/nlme/html/fixef.lmList.html -lib/R/library/nlme/html/fixef.lme.html -lib/R/library/nlme/html/formula.corStruct.html -lib/R/library/nlme/html/formula.gls.html -lib/R/library/nlme/html/formula.gnls.html -lib/R/library/nlme/html/formula.groupedData.html -lib/R/library/nlme/html/formula.lmList.html -lib/R/library/nlme/html/formula.lme.html -lib/R/library/nlme/html/formula.modelStruct.html 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lib/R/library/nnet/libs -@dirrm lib/R/library/nnet/man -@dirrm lib/R/library/nnet -@dirrm lib/R/library/rpart/Meta -@dirrm lib/R/library/rpart/R -@dirrm lib/R/library/rpart/R-ex -@dirrm lib/R/library/rpart/data -@dirrm lib/R/library/rpart/help -@dirrm lib/R/library/rpart/html -@dirrm lib/R/library/rpart/latex -@dirrm lib/R/library/rpart/libs -@dirrm lib/R/library/rpart/man -@dirrm lib/R/library/rpart -@dirrm lib/R/library/spatial/Meta -@dirrm lib/R/library/spatial/R -@dirrm lib/R/library/spatial/R-ex -@dirrm lib/R/library/spatial/help -@dirrm lib/R/library/spatial/html -@dirrm lib/R/library/spatial/latex -@dirrm lib/R/library/spatial/libs -@dirrm lib/R/library/spatial/man -@dirrm lib/R/library/spatial/ppdata -@dirrm lib/R/library/spatial -@dirrm lib/R/library/splines/Meta -@dirrm lib/R/library/splines/R -@dirrm lib/R/library/splines/R-ex -@dirrm lib/R/library/splines/help -@dirrm lib/R/library/splines/html -@dirrm lib/R/library/splines/latex -@dirrm lib/R/library/splines/libs -@dirrm lib/R/library/splines/man -@dirrm lib/R/library/splines -@dirrm lib/R/library/stepfun/Meta -@dirrm lib/R/library/stepfun/R -@dirrm lib/R/library/stepfun/R-ex -@dirrm lib/R/library/stepfun/help -@dirrm lib/R/library/stepfun/html -@dirrm lib/R/library/stepfun/latex -@dirrm lib/R/library/stepfun/man -@dirrm lib/R/library/stepfun -@dirrm lib/R/library/survival/Meta -@dirrm lib/R/library/survival/R -@dirrm lib/R/library/survival/R-ex -@dirrm lib/R/library/survival/data -@dirrm lib/R/library/survival/help -@dirrm lib/R/library/survival/html -@dirrm lib/R/library/survival/latex -@dirrm lib/R/library/survival/libs -@dirrm lib/R/library/survival/man -@dirrm lib/R/library/survival -@dirrm lib/R/library/tcltk/Meta -@dirrm lib/R/library/tcltk/R -@dirrm lib/R/library/tcltk/R-ex -@dirrm lib/R/library/tcltk/demo -@dirrm lib/R/library/tcltk/exec -@dirrm lib/R/library/tcltk/help -@dirrm lib/R/library/tcltk/html -@dirrm lib/R/library/tcltk/latex -@dirrm lib/R/library/tcltk/libs -@dirrm lib/R/library/tcltk/man -@dirrm lib/R/library/tcltk -@dirrm lib/R/library/tools/Meta -@dirrm lib/R/library/tools/R -@dirrm lib/R/library/tools/R-ex -@dirrm lib/R/library/tools/Sweave -@dirrm lib/R/library/tools/help -@dirrm lib/R/library/tools/html -@dirrm lib/R/library/tools/latex -@dirrm lib/R/library/tools/libs -@dirrm lib/R/library/tools/man -@dirrm lib/R/library/tools -@dirrm lib/R/library/ts/Meta -@dirrm lib/R/library/ts/R -@dirrm lib/R/library/ts/R-ex -@dirrm lib/R/library/ts/data -@dirrm lib/R/library/ts/help -@dirrm lib/R/library/ts/html -@dirrm lib/R/library/ts/latex -@dirrm lib/R/library/ts/libs -@dirrm lib/R/library/ts/man -@dirrm lib/R/library/ts -@dirrm lib/R/modules -@dirrm lib/R/library -@dirrm lib/R/share/R -@dirrm lib/R/share/make -@dirrm lib/R/share/perl/R +@dirrm lib/R/share/texmf +@dirrm lib/R/share/sh @dirrm lib/R/share/perl/Text +@dirrm lib/R/share/perl/R @dirrm lib/R/share/perl -@dirrm lib/R/share/sh -@dirrm lib/R/share/texmf +@dirrm lib/R/share/make +@dirrm lib/R/share/R @dirrm lib/R/share +@dirrm lib/R/modules +@dirrm lib/R/library/ts/man +@dirrm lib/R/library/ts/libs +@dirrm lib/R/library/ts/latex +@dirrm lib/R/library/ts/html +@dirrm lib/R/library/ts/help +@dirrm lib/R/library/ts/data +@dirrm lib/R/library/ts/R-ex +@dirrm lib/R/library/ts/R +@dirrm lib/R/library/ts/Meta +@dirrm lib/R/library/ts +@dirrm lib/R/library/tools/man +@dirrm lib/R/library/tools/libs +@dirrm lib/R/library/tools/latex +@dirrm lib/R/library/tools/html +@dirrm lib/R/library/tools/help +@dirrm lib/R/library/tools/Sweave +@dirrm lib/R/library/tools/R-ex +@dirrm lib/R/library/tools/R +@dirrm lib/R/library/tools/Meta +@dirrm lib/R/library/tools +@dirrm lib/R/library/tcltk/man +@dirrm lib/R/library/tcltk/libs +@dirrm lib/R/library/tcltk/latex +@dirrm lib/R/library/tcltk/html +@dirrm lib/R/library/tcltk/help +@dirrm lib/R/library/tcltk/exec +@dirrm lib/R/library/tcltk/demo +@dirrm lib/R/library/tcltk/R-ex +@dirrm lib/R/library/tcltk/R +@dirrm lib/R/library/tcltk/Meta +@dirrm lib/R/library/tcltk +@dirrm lib/R/library/survival/man +@dirrm lib/R/library/survival/libs +@dirrm lib/R/library/survival/latex +@dirrm lib/R/library/survival/html +@dirrm lib/R/library/survival/help +@dirrm lib/R/library/survival/data +@dirrm lib/R/library/survival/R-ex +@dirrm lib/R/library/survival/R +@dirrm lib/R/library/survival/Meta +@dirrm lib/R/library/survival +@dirrm lib/R/library/stepfun/man +@dirrm lib/R/library/stepfun/latex +@dirrm lib/R/library/stepfun/html +@dirrm lib/R/library/stepfun/help +@dirrm lib/R/library/stepfun/R-ex +@dirrm lib/R/library/stepfun/R +@dirrm lib/R/library/stepfun/Meta +@dirrm lib/R/library/stepfun +@dirrm lib/R/library/splines/man +@dirrm lib/R/library/splines/libs +@dirrm lib/R/library/splines/latex +@dirrm lib/R/library/splines/html +@dirrm lib/R/library/splines/help +@dirrm lib/R/library/splines/R-ex +@dirrm lib/R/library/splines/R +@dirrm lib/R/library/splines/Meta +@dirrm lib/R/library/splines +@dirrm lib/R/library/spatial/ppdata +@dirrm lib/R/library/spatial/man +@dirrm lib/R/library/spatial/libs +@dirrm lib/R/library/spatial/latex +@dirrm lib/R/library/spatial/html +@dirrm lib/R/library/spatial/help +@dirrm lib/R/library/spatial/R-ex +@dirrm lib/R/library/spatial/R +@dirrm lib/R/library/spatial/Meta +@dirrm lib/R/library/spatial +@dirrm lib/R/library/rpart/man +@dirrm lib/R/library/rpart/libs +@dirrm lib/R/library/rpart/latex +@dirrm lib/R/library/rpart/html +@dirrm lib/R/library/rpart/help +@dirrm lib/R/library/rpart/data +@dirrm lib/R/library/rpart/R-ex +@dirrm lib/R/library/rpart/R +@dirrm lib/R/library/rpart/Meta +@dirrm lib/R/library/rpart +@dirrm lib/R/library/nnet/man +@dirrm lib/R/library/nnet/libs +@dirrm lib/R/library/nnet/latex +@dirrm lib/R/library/nnet/html +@dirrm lib/R/library/nnet/help +@dirrm lib/R/library/nnet/R-ex +@dirrm lib/R/library/nnet/R +@dirrm lib/R/library/nnet/Meta +@dirrm lib/R/library/nnet +@dirrm lib/R/library/nls/man +@dirrm lib/R/library/nls/libs +@dirrm lib/R/library/nls/latex +@dirrm lib/R/library/nls/html +@dirrm lib/R/library/nls/help +@dirrm lib/R/library/nls/data +@dirrm lib/R/library/nls/R-ex +@dirrm lib/R/library/nls/R +@dirrm lib/R/library/nls/Meta +@dirrm lib/R/library/nls +@dirrm lib/R/library/nlme/scripts +@dirrm lib/R/library/nlme/mlbook +@dirrm lib/R/library/nlme/man +@dirrm lib/R/library/nlme/libs +@dirrm lib/R/library/nlme/latex +@dirrm lib/R/library/nlme/html +@dirrm lib/R/library/nlme/help +@dirrm lib/R/library/nlme/data +@dirrm lib/R/library/nlme/R-ex +@dirrm lib/R/library/nlme/R +@dirrm lib/R/library/nlme/Meta +@dirrm lib/R/library/nlme +@dirrm lib/R/library/mva/man +@dirrm lib/R/library/mva/libs +@dirrm lib/R/library/mva/latex +@dirrm lib/R/library/mva/html +@dirrm lib/R/library/mva/help +@dirrm lib/R/library/mva/data +@dirrm lib/R/library/mva/R-ex +@dirrm lib/R/library/mva/R +@dirrm lib/R/library/mva/Meta +@dirrm lib/R/library/mva +@dirrm lib/R/library/modreg/man +@dirrm lib/R/library/modreg/libs +@dirrm lib/R/library/modreg/latex +@dirrm lib/R/library/modreg/html +@dirrm lib/R/library/modreg/help +@dirrm lib/R/library/modreg/data +@dirrm lib/R/library/modreg/R-ex +@dirrm lib/R/library/modreg/R +@dirrm lib/R/library/modreg/Meta +@dirrm lib/R/library/modreg +@dirrm lib/R/library/mgcv/man +@dirrm lib/R/library/mgcv/libs +@dirrm lib/R/library/mgcv/latex +@dirrm lib/R/library/mgcv/html +@dirrm lib/R/library/mgcv/help +@dirrm lib/R/library/mgcv/R-ex +@dirrm lib/R/library/mgcv/R +@dirrm lib/R/library/mgcv/Meta +@dirrm lib/R/library/mgcv +@dirrm lib/R/library/methods/man +@dirrm lib/R/library/methods/libs +@dirrm lib/R/library/methods/latex +@dirrm lib/R/library/methods/html +@dirrm lib/R/library/methods/help +@dirrm lib/R/library/methods/R-ex +@dirrm lib/R/library/methods/R +@dirrm lib/R/library/methods/Meta +@dirrm lib/R/library/methods +@dirrm lib/R/library/lqs/man +@dirrm lib/R/library/lqs/libs +@dirrm lib/R/library/lqs/latex +@dirrm lib/R/library/lqs/html +@dirrm lib/R/library/lqs/help +@dirrm lib/R/library/lqs/R-ex +@dirrm lib/R/library/lqs/R +@dirrm lib/R/library/lqs/Meta +@dirrm lib/R/library/lqs +@dirrm lib/R/library/lattice/man +@dirrm lib/R/library/lattice/libs +@dirrm lib/R/library/lattice/latex +@dirrm lib/R/library/lattice/html +@dirrm lib/R/library/lattice/help +@dirrm lib/R/library/lattice/demo +@dirrm lib/R/library/lattice/data +@dirrm lib/R/library/lattice/R-ex +@dirrm lib/R/library/lattice/R +@dirrm lib/R/library/lattice/Meta +@dirrm lib/R/library/lattice +@dirrm lib/R/library/grid/man +@dirrm lib/R/library/grid/libs +@dirrm lib/R/library/grid/latex +@dirrm lib/R/library/grid/html +@dirrm lib/R/library/grid/help +@dirrm lib/R/library/grid/doc +@dirrm lib/R/library/grid/R-ex +@dirrm lib/R/library/grid/R +@dirrm lib/R/library/grid/Meta +@dirrm lib/R/library/grid +@dirrm lib/R/library/foreign/man +@dirrm lib/R/library/foreign/libs +@dirrm lib/R/library/foreign/latex +@dirrm lib/R/library/foreign/html +@dirrm lib/R/library/foreign/help +@dirrm lib/R/library/foreign/R-ex +@dirrm lib/R/library/foreign/R +@dirrm lib/R/library/foreign/Meta +@dirrm lib/R/library/foreign +@dirrm lib/R/library/eda/man +@dirrm lib/R/library/eda/libs +@dirrm lib/R/library/eda/latex +@dirrm lib/R/library/eda/html +@dirrm lib/R/library/eda/help +@dirrm lib/R/library/eda/demo +@dirrm lib/R/library/eda/R-ex +@dirrm lib/R/library/eda/R +@dirrm lib/R/library/eda/Meta +@dirrm lib/R/library/eda +@dirrm lib/R/library/ctest/man +@dirrm lib/R/library/ctest/libs +@dirrm lib/R/library/ctest/latex +@dirrm lib/R/library/ctest/html +@dirrm lib/R/library/ctest/help +@dirrm lib/R/library/ctest/R-ex +@dirrm lib/R/library/ctest/R +@dirrm lib/R/library/ctest/Meta +@dirrm lib/R/library/ctest +@dirrm lib/R/library/cluster/man +@dirrm lib/R/library/cluster/libs +@dirrm lib/R/library/cluster/latex +@dirrm lib/R/library/cluster/html +@dirrm lib/R/library/cluster/help +@dirrm lib/R/library/cluster/data +@dirrm lib/R/library/cluster/R-ex +@dirrm lib/R/library/cluster/R +@dirrm lib/R/library/cluster/Meta +@dirrm lib/R/library/cluster +@dirrm lib/R/library/class/man +@dirrm lib/R/library/class/libs +@dirrm lib/R/library/class/latex +@dirrm lib/R/library/class/html +@dirrm lib/R/library/class/help +@dirrm lib/R/library/class/R-ex +@dirrm lib/R/library/class/R +@dirrm lib/R/library/class/Meta +@dirrm lib/R/library/class +@dirrm lib/R/library/boot/man +@dirrm lib/R/library/boot/latex +@dirrm lib/R/library/boot/html +@dirrm lib/R/library/boot/help +@dirrm lib/R/library/boot/data +@dirrm lib/R/library/boot/R-ex +@dirrm lib/R/library/boot/R +@dirrm lib/R/library/boot/Meta +@dirrm lib/R/library/boot +@dirrm lib/R/library/base/man +@dirrm lib/R/library/base/latex +@dirrm lib/R/library/base/html +@dirrm lib/R/library/base/help +@dirrm lib/R/library/base/demo +@dirrm lib/R/library/base/data +@dirrm lib/R/library/base/R-ex +@dirrm lib/R/library/base/R +@dirrm lib/R/library/base/Meta +@dirrm lib/R/library/base +@dirrm lib/R/library/MASS/scripts3 +@dirrm lib/R/library/MASS/scripts +@dirrm lib/R/library/MASS/man +@dirrm lib/R/library/MASS/libs +@dirrm lib/R/library/MASS/latex +@dirrm lib/R/library/MASS/html +@dirrm lib/R/library/MASS/help +@dirrm lib/R/library/MASS/data +@dirrm lib/R/library/MASS/R-ex +@dirrm lib/R/library/MASS/R +@dirrm lib/R/library/MASS/Meta +@dirrm lib/R/library/MASS +@dirrm lib/R/library/KernSmooth/man +@dirrm lib/R/library/KernSmooth/libs +@dirrm lib/R/library/KernSmooth/latex +@dirrm lib/R/library/KernSmooth/html +@dirrm lib/R/library/KernSmooth/help +@dirrm lib/R/library/KernSmooth/R-ex +@dirrm lib/R/library/KernSmooth/R +@dirrm lib/R/library/KernSmooth/Meta +@dirrm lib/R/library/KernSmooth +@dirrm lib/R/library +@dirrm lib/R/include/R_ext +@dirrm lib/R/include +@dirrm lib/R/etc +@dirrm lib/R/doc/manual +@dirrm lib/R/doc/html/search +@dirrm lib/R/doc/html +@dirrm lib/R/doc +@dirrm lib/R/bin +@dirrm lib/R/afm @dirrm lib/R diff --git a/math/R-project/Makefile b/math/R-project/Makefile index ed7f5be..139ca8a 100644 --- a/math/R-project/Makefile +++ b/math/R-project/Makefile @@ -6,7 +6,7 @@ # PORTNAME= R -PORTVERSION= 1.7.0 +PORTVERSION= 1.7.1 CATEGORIES= math MASTER_SITES= http://cran.r-project.org/src/base/ \ ftp://cran.r-project.org/pub/R/src/base/ \ @@ -26,13 +26,18 @@ MAINTAINER= vangyzen@stat.duke.edu COMMENT= A language for statistical computing and graphics LIB_DEPENDS= tcl84:${PORTSDIR}/lang/tcl84 \ - tk84:${PORTSDIR}/x11-toolkits/tk84 + tk84:${PORTSDIR}/x11-toolkits/tk84 \ + jpeg.9:${PORTSDIR}/graphics/jpeg \ + png.5:${PORTSDIR}/graphics/png \ + pcre.0:${PORTSDIR}/devel/pcre \ + lapack.3:${PORTSDIR}/math/lapack GNU_CONFIGURE= yes USE_XLIB= yes USE_PERL5= yes CONFIGURE_ENV= R_PAPERSIZE=${PAPERSIZE} \ INSTALL_DATA="${INSTALL} ${COPY} ${_SHROWNGRP} -m 644" +CONFIGURE_ARGS= --with-lapack PAPERSIZE?= letter .if ${PAPERSIZE} != letter && ${PAPERSIZE} != a4 diff --git a/math/R-project/distinfo b/math/R-project/distinfo index 63db5a7..a438e43 100644 --- a/math/R-project/distinfo +++ b/math/R-project/distinfo @@ -1 +1 @@ -MD5 (R-1.7.0.tgz) = 292dbe4dc47e6b492ff72a62471654ca +MD5 (R-1.7.1.tgz) = 833c2a9a62818211f2f9f0353ecd9bbd diff --git a/math/R-project/pkg-plist b/math/R-project/pkg-plist index 983fdcb..fff8453 100644 --- a/math/R-project/pkg-plist +++ b/math/R-project/pkg-plist @@ -106,7 +106,6 @@ lib/R/bin/build lib/R/bin/check lib/R/bin/config lib/R/bin/f77 -lib/R/bin/libRlapack.so lib/R/bin/libtool lib/R/bin/pager lib/R/bin/texi2dvi @@ -492,6 +491,7 @@ lib/R/library/MASS/help/lh lib/R/library/MASS/help/lm.gls lib/R/library/MASS/help/lm.ridge lib/R/library/MASS/help/loglm +lib/R/library/MASS/help/loglm1 lib/R/library/MASS/help/logtrans lib/R/library/MASS/help/mammals lib/R/library/MASS/help/mca @@ -650,6 +650,7 @@ lib/R/library/MASS/html/lh.html lib/R/library/MASS/html/lm.gls.html lib/R/library/MASS/html/lm.ridge.html lib/R/library/MASS/html/loglm.html +lib/R/library/MASS/html/loglm1.html lib/R/library/MASS/html/logtrans.html lib/R/library/MASS/html/mammals.html lib/R/library/MASS/html/mca.html @@ -807,6 +808,7 @@ lib/R/library/MASS/latex/lh.tex lib/R/library/MASS/latex/lm.gls.tex lib/R/library/MASS/latex/lm.ridge.tex lib/R/library/MASS/latex/loglm.tex +lib/R/library/MASS/latex/loglm1.tex lib/R/library/MASS/latex/logtrans.tex lib/R/library/MASS/latex/mammals.tex lib/R/library/MASS/latex/mca.tex @@ -1157,6 +1159,7 @@ lib/R/library/base/R-ex/function.R lib/R/library/base/R-ex/gc.R lib/R/library/base/R-ex/gc.time.R lib/R/library/base/R-ex/get.R +lib/R/library/base/R-ex/getAnywhere.R lib/R/library/base/R-ex/getFromNamespace.R lib/R/library/base/R-ex/getNativeSymbolInfo.R lib/R/library/base/R-ex/getS3method.R @@ -1244,7 +1247,7 @@ lib/R/library/base/R-ex/match.fun.R lib/R/library/base/R-ex/matmult.R lib/R/library/base/R-ex/matplot.R lib/R/library/base/R-ex/matrix.R -lib/R/library/base/R-ex/max.col.R +lib/R/library/base/R-ex/maxCol.R lib/R/library/base/R-ex/mean.R lib/R/library/base/R-ex/median.R lib/R/library/base/R-ex/memory.profile.R @@ -1380,6 +1383,7 @@ lib/R/library/base/R-ex/rowsum.R lib/R/library/base/R-ex/rug.R lib/R/library/base/R-ex/sample.R lib/R/library/base/R-ex/save.R +lib/R/library/base/R-ex/savehistory.R lib/R/library/base/R-ex/scale.R lib/R/library/base/R-ex/scan.R lib/R/library/base/R-ex/screen.R @@ -1841,6 +1845,7 @@ lib/R/library/base/help/gc lib/R/library/base/help/gc.time lib/R/library/base/help/gctorture lib/R/library/base/help/get +lib/R/library/base/help/getAnywhere lib/R/library/base/help/getFromNamespace lib/R/library/base/help/getNativeSymbolInfo lib/R/library/base/help/getS3method @@ -1944,7 +1949,7 @@ lib/R/library/base/help/match.fun lib/R/library/base/help/matmult lib/R/library/base/help/matplot lib/R/library/base/help/matrix -lib/R/library/base/help/max.col +lib/R/library/base/help/maxCol lib/R/library/base/help/mean lib/R/library/base/help/median lib/R/library/base/help/memory.profile @@ -2522,6 +2527,7 @@ lib/R/library/base/html/gc.html lib/R/library/base/html/gc.time.html lib/R/library/base/html/gctorture.html lib/R/library/base/html/get.html +lib/R/library/base/html/getAnywhere.html lib/R/library/base/html/getFromNamespace.html lib/R/library/base/html/getNativeSymbolInfo.html lib/R/library/base/html/getS3method.html @@ -2625,7 +2631,7 @@ lib/R/library/base/html/match.html lib/R/library/base/html/matmult.html lib/R/library/base/html/matplot.html lib/R/library/base/html/matrix.html -lib/R/library/base/html/max.col.html +lib/R/library/base/html/maxCol.html lib/R/library/base/html/mean.html lib/R/library/base/html/median.html lib/R/library/base/html/memory.profile.html @@ -3202,6 +3208,7 @@ lib/R/library/base/latex/gc.tex lib/R/library/base/latex/gc.time.tex lib/R/library/base/latex/gctorture.tex lib/R/library/base/latex/get.tex +lib/R/library/base/latex/getAnywhere.tex lib/R/library/base/latex/getFromNamespace.tex lib/R/library/base/latex/getNativeSymbolInfo.tex lib/R/library/base/latex/getS3method.tex @@ -3305,7 +3312,7 @@ lib/R/library/base/latex/match.tex lib/R/library/base/latex/matmult.tex lib/R/library/base/latex/matplot.tex lib/R/library/base/latex/matrix.tex -lib/R/library/base/latex/max.col.tex +lib/R/library/base/latex/maxCol.tex lib/R/library/base/latex/mean.tex lib/R/library/base/latex/median.tex lib/R/library/base/latex/memory.profile.tex @@ -4040,6 +4047,7 @@ lib/R/library/cluster/R-ex/flower.R lib/R/library/cluster/R-ex/lower.to.upper.tri.inds.R lib/R/library/cluster/R-ex/mona.R lib/R/library/cluster/R-ex/pam.R +lib/R/library/cluster/R-ex/pam.object.R lib/R/library/cluster/R-ex/plot.agnes.R lib/R/library/cluster/R-ex/plot.diana.R lib/R/library/cluster/R-ex/plot.partition.R @@ -5267,6 +5275,7 @@ lib/R/library/nlme/DESCRIPTION lib/R/library/nlme/INDEX lib/R/library/nlme/Meta/Rd.rds lib/R/library/nlme/Meta/data.rds +lib/R/library/nlme/NAMESPACE lib/R/library/nlme/R-ex/ACF.R lib/R/library/nlme/R-ex/ACF.gls.R lib/R/library/nlme/R-ex/ACF.lme.R @@ -5354,14 +5363,10 @@ 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-lib/R/library/nlme/R-ex/getResponse.lmList.R -lib/R/library/nlme/R-ex/getResponse.lme.R lib/R/library/nlme/R-ex/getResponseFormula.R lib/R/library/nlme/R-ex/getVarCov.R lib/R/library/nlme/R-ex/gls.R @@ -5449,7 +5437,6 @@ lib/R/library/nlme/R-ex/intervals.lmList.R lib/R/library/nlme/R-ex/intervals.lme.R lib/R/library/nlme/R-ex/isBalanced.R lib/R/library/nlme/R-ex/isInitialized.R -lib/R/library/nlme/R-ex/isInitialized.reStruct.R lib/R/library/nlme/R-ex/lmList.R lib/R/library/nlme/R-ex/lmList.groupedData.R lib/R/library/nlme/R-ex/lme.R @@ -5462,7 +5449,6 @@ lib/R/library/nlme/R-ex/logDet.corStruct.R lib/R/library/nlme/R-ex/logDet.pdMat.R lib/R/library/nlme/R-ex/logDet.reStruct.R lib/R/library/nlme/R-ex/logLik.corStruct.R -lib/R/library/nlme/R-ex/logLik.gls.R lib/R/library/nlme/R-ex/logLik.gnls.R lib/R/library/nlme/R-ex/logLik.lmList.R lib/R/library/nlme/R-ex/logLik.lme.R @@ -5513,24 +5499,8 @@ lib/R/library/nlme/R-ex/predict.gnls.R lib/R/library/nlme/R-ex/predict.lmList.R 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lib/R/library/nlme/help/lme @@ -5817,7 +5761,6 @@ lib/R/library/nlme/help/logDet.corStruct lib/R/library/nlme/help/logDet.pdMat lib/R/library/nlme/help/logDet.reStruct lib/R/library/nlme/help/logLik.corStruct -lib/R/library/nlme/help/logLik.gls lib/R/library/nlme/help/logLik.glsStruct lib/R/library/nlme/help/logLik.gnls lib/R/library/nlme/help/logLik.gnlsStruct @@ -5830,7 +5773,6 @@ lib/R/library/nlme/help/model.matrix.reStruct lib/R/library/nlme/help/needUpdate lib/R/library/nlme/help/needUpdate.modelStruct lib/R/library/nlme/help/nlme -lib/R/library/nlme/help/nlme-internal lib/R/library/nlme/help/nlme.nlsList lib/R/library/nlme/help/nlmeControl lib/R/library/nlme/help/nlmeObject @@ -5875,24 +5817,8 @@ lib/R/library/nlme/help/predict.gnls lib/R/library/nlme/help/predict.lmList lib/R/library/nlme/help/predict.lme lib/R/library/nlme/help/predict.nlme -lib/R/library/nlme/help/print.anova.lme -lib/R/library/nlme/help/print.corStruct -lib/R/library/nlme/help/print.gls 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lib/R/library/nlme/html/isBalanced.html lib/R/library/nlme/html/isInitialized.html -lib/R/library/nlme/html/isInitialized.reStruct.html lib/R/library/nlme/html/lmList.groupedData.html lib/R/library/nlme/html/lmList.html lib/R/library/nlme/html/lme.groupedData.html @@ -6149,7 +6049,6 @@ lib/R/library/nlme/html/logDet.html lib/R/library/nlme/html/logDet.pdMat.html lib/R/library/nlme/html/logDet.reStruct.html lib/R/library/nlme/html/logLik.corStruct.html -lib/R/library/nlme/html/logLik.gls.html lib/R/library/nlme/html/logLik.glsStruct.html lib/R/library/nlme/html/logLik.gnls.html lib/R/library/nlme/html/logLik.gnlsStruct.html @@ -6161,7 +6060,6 @@ lib/R/library/nlme/html/logLik.varFunc.html lib/R/library/nlme/html/model.matrix.reStruct.html lib/R/library/nlme/html/needUpdate.html lib/R/library/nlme/html/needUpdate.modelStruct.html -lib/R/library/nlme/html/nlme-internal.html lib/R/library/nlme/html/nlme.html lib/R/library/nlme/html/nlme.nlsList.html lib/R/library/nlme/html/nlmeControl.html @@ -6207,24 +6105,8 @@ lib/R/library/nlme/html/predict.gnls.html lib/R/library/nlme/html/predict.lmList.html lib/R/library/nlme/html/predict.lme.html lib/R/library/nlme/html/predict.nlme.html -lib/R/library/nlme/html/print.anova.lme.html -lib/R/library/nlme/html/print.corStruct.html -lib/R/library/nlme/html/print.gls.html -lib/R/library/nlme/html/print.groupedData.html -lib/R/library/nlme/html/print.lmList.html -lib/R/library/nlme/html/print.lme.html -lib/R/library/nlme/html/print.modelStruct.html -lib/R/library/nlme/html/print.pdMat.html -lib/R/library/nlme/html/print.reStruct.html -lib/R/library/nlme/html/print.summary.corStruct.html -lib/R/library/nlme/html/print.summary.gls.html -lib/R/library/nlme/html/print.summary.lmList.html -lib/R/library/nlme/html/print.summary.lme.html -lib/R/library/nlme/html/print.summary.modelStruct.html lib/R/library/nlme/html/print.summary.pdMat.html -lib/R/library/nlme/html/print.summary.varFunc.html lib/R/library/nlme/html/print.varFunc.html -lib/R/library/nlme/html/pruneLevels.html lib/R/library/nlme/html/qqnorm.gls.html lib/R/library/nlme/html/qqnorm.lme.html lib/R/library/nlme/html/quinModel.html @@ -6301,10 +6183,6 @@ lib/R/library/nlme/latex/Initialize.reStruct.tex lib/R/library/nlme/latex/Initialize.tex lib/R/library/nlme/latex/Initialize.varFunc.tex lib/R/library/nlme/latex/LDEsysMat.tex -lib/R/library/nlme/latex/MEEM.tex -lib/R/library/nlme/latex/MEdecomp.tex -lib/R/library/nlme/latex/MEdims.tex -lib/R/library/nlme/latex/MEestimate.tex lib/R/library/nlme/latex/Machines.tex lib/R/library/nlme/latex/MathAchSchool.tex lib/R/library/nlme/latex/MathAchieve.tex @@ -6363,14 +6241,10 @@ lib/R/library/nlme/latex/augPred.tex lib/R/library/nlme/latex/balancedGrouped.tex lib/R/library/nlme/latex/bdf.tex lib/R/library/nlme/latex/coef.corStruct.tex -lib/R/library/nlme/latex/coef.gls.tex lib/R/library/nlme/latex/coef.gnls.tex lib/R/library/nlme/latex/coef.lmList.tex lib/R/library/nlme/latex/coef.lme.tex lib/R/library/nlme/latex/coef.modelStruct.tex -lib/R/library/nlme/latex/coef.pdCompSymm.tex -lib/R/library/nlme/latex/coef.pdDiag.tex -lib/R/library/nlme/latex/coef.pdIdent.tex lib/R/library/nlme/latex/coef.pdMat.tex lib/R/library/nlme/latex/coef.reStruct.tex lib/R/library/nlme/latex/coef.varFunc.tex @@ -6400,9 +6274,7 @@ lib/R/library/nlme/latex/corSpher.tex lib/R/library/nlme/latex/corSymm.tex lib/R/library/nlme/latex/ergoStool.tex lib/R/library/nlme/latex/fdHess.tex -lib/R/library/nlme/latex/fitted.gls.tex lib/R/library/nlme/latex/fitted.glsStruct.tex -lib/R/library/nlme/latex/fitted.gnls.tex lib/R/library/nlme/latex/fitted.gnlsStruct.tex lib/R/library/nlme/latex/fitted.lmList.tex lib/R/library/nlme/latex/fitted.lme.tex @@ -6410,20 +6282,9 @@ lib/R/library/nlme/latex/fitted.lmeStruct.tex lib/R/library/nlme/latex/fitted.nlmeStruct.tex lib/R/library/nlme/latex/fixed.effects.tex lib/R/library/nlme/latex/fixef.lmList.tex -lib/R/library/nlme/latex/fixef.lme.tex 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-lib/R/library/nlme/latex/getResponse.gls.tex -lib/R/library/nlme/latex/getResponse.lmList.tex -lib/R/library/nlme/latex/getResponse.lme.tex lib/R/library/nlme/latex/getResponse.tex lib/R/library/nlme/latex/getResponseFormula.tex lib/R/library/nlme/latex/getVarCov.tex @@ -6464,7 +6321,6 @@ lib/R/library/nlme/latex/intervals.lmList.tex lib/R/library/nlme/latex/intervals.lme.tex lib/R/library/nlme/latex/intervals.tex lib/R/library/nlme/latex/isBalanced.tex -lib/R/library/nlme/latex/isInitialized.reStruct.tex lib/R/library/nlme/latex/isInitialized.tex lib/R/library/nlme/latex/lmList.groupedData.tex lib/R/library/nlme/latex/lmList.tex @@ -6480,7 +6336,6 @@ lib/R/library/nlme/latex/logDet.pdMat.tex lib/R/library/nlme/latex/logDet.reStruct.tex lib/R/library/nlme/latex/logDet.tex lib/R/library/nlme/latex/logLik.corStruct.tex -lib/R/library/nlme/latex/logLik.gls.tex lib/R/library/nlme/latex/logLik.glsStruct.tex lib/R/library/nlme/latex/logLik.gnls.tex lib/R/library/nlme/latex/logLik.gnlsStruct.tex @@ -6492,7 +6347,6 @@ lib/R/library/nlme/latex/logLik.varFunc.tex lib/R/library/nlme/latex/model.matrix.reStruct.tex lib/R/library/nlme/latex/needUpdate.modelStruct.tex lib/R/library/nlme/latex/needUpdate.tex -lib/R/library/nlme/latex/nlme-internal.tex lib/R/library/nlme/latex/nlme.nlsList.tex lib/R/library/nlme/latex/nlme.tex lib/R/library/nlme/latex/nlmeControl.tex @@ -6538,24 +6392,8 @@ lib/R/library/nlme/latex/predict.gnls.tex lib/R/library/nlme/latex/predict.lmList.tex lib/R/library/nlme/latex/predict.lme.tex lib/R/library/nlme/latex/predict.nlme.tex -lib/R/library/nlme/latex/print.anova.lme.tex -lib/R/library/nlme/latex/print.corStruct.tex -lib/R/library/nlme/latex/print.gls.tex -lib/R/library/nlme/latex/print.groupedData.tex -lib/R/library/nlme/latex/print.lmList.tex -lib/R/library/nlme/latex/print.lme.tex -lib/R/library/nlme/latex/print.modelStruct.tex -lib/R/library/nlme/latex/print.pdMat.tex -lib/R/library/nlme/latex/print.reStruct.tex -lib/R/library/nlme/latex/print.summary.corStruct.tex -lib/R/library/nlme/latex/print.summary.gls.tex -lib/R/library/nlme/latex/print.summary.lmList.tex -lib/R/library/nlme/latex/print.summary.lme.tex -lib/R/library/nlme/latex/print.summary.modelStruct.tex lib/R/library/nlme/latex/print.summary.pdMat.tex -lib/R/library/nlme/latex/print.summary.varFunc.tex lib/R/library/nlme/latex/print.varFunc.tex -lib/R/library/nlme/latex/pruneLevels.tex lib/R/library/nlme/latex/qqnorm.gls.tex lib/R/library/nlme/latex/qqnorm.lme.tex lib/R/library/nlme/latex/quinModel.tex @@ -6612,6 +6450,7 @@ lib/R/library/nlme/scripts/ch04.R lib/R/library/nlme/scripts/ch05.R lib/R/library/nlme/scripts/ch06.R lib/R/library/nlme/scripts/ch08.R +lib/R/library/nlme/scripts/sims.rda lib/R/library/nls/CONTENTS lib/R/library/nls/DESCRIPTION lib/R/library/nls/INDEX @@ -7194,6 +7033,7 @@ lib/R/library/survival/R-ex/residuals.survreg.R lib/R/library/survival/R-ex/ridge.R lib/R/library/survival/R-ex/strata.R lib/R/library/survival/R-ex/summary.survfit.R +lib/R/library/survival/R-ex/survSplit.R lib/R/library/survival/R-ex/survdiff.R lib/R/library/survival/R-ex/survexp.R lib/R/library/survival/R-ex/survfit.R @@ -7205,7 +7045,6 @@ lib/R/library/survival/R-ex/survreg.old.R lib/R/library/survival/R-ex/tcut.R lib/R/library/survival/R-ex/untangle.specials.R lib/R/library/survival/R/survival -lib/R/library/survival/data/00Index lib/R/library/survival/data/aml.rda lib/R/library/survival/data/bladder.rda lib/R/library/survival/data/cancer.rda @@ -7263,6 +7102,7 @@ lib/R/library/survival/help/ridge lib/R/library/survival/help/stanford2 lib/R/library/survival/help/strata lib/R/library/survival/help/summary.survfit +lib/R/library/survival/help/survSplit lib/R/library/survival/help/survdiff lib/R/library/survival/help/survexp lib/R/library/survival/help/survexp.fit @@ -7322,6 +7162,7 @@ lib/R/library/survival/html/ridge.html lib/R/library/survival/html/stanford2.html lib/R/library/survival/html/strata.html lib/R/library/survival/html/summary.survfit.html +lib/R/library/survival/html/survSplit.html lib/R/library/survival/html/survdiff.html lib/R/library/survival/html/survexp.fit.html lib/R/library/survival/html/survexp.html @@ -7380,6 +7221,7 @@ lib/R/library/survival/latex/ridge.tex lib/R/library/survival/latex/stanford2.tex lib/R/library/survival/latex/strata.tex lib/R/library/survival/latex/summary.survfit.tex +lib/R/library/survival/latex/survSplit.tex lib/R/library/survival/latex/survdiff.tex lib/R/library/survival/latex/survexp.fit.tex lib/R/library/survival/latex/survexp.tex @@ -7800,287 +7642,287 @@ lib/R/share/texmf/hyperref.cfg lib/R/share/texmf/omsaer.fd lib/R/share/texmf/omsaett.fd lib/R/share/texmf/omscmtt.fd -@dirrm lib/R/afm -@dirrm lib/R/bin -@dirrm lib/R/doc/html/search -@dirrm lib/R/doc/html -@dirrm lib/R/doc/manual -@dirrm lib/R/doc -@dirrm lib/R/etc -@dirrm lib/R/include/R_ext -@dirrm lib/R/include -@dirrm 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lib/R/library/ts/man +@dirrm lib/R/library/ts/libs +@dirrm lib/R/library/ts/latex +@dirrm lib/R/library/ts/html +@dirrm lib/R/library/ts/help +@dirrm lib/R/library/ts/data +@dirrm lib/R/library/ts/R-ex +@dirrm lib/R/library/ts/R +@dirrm lib/R/library/ts/Meta +@dirrm lib/R/library/ts +@dirrm lib/R/library/tools/man +@dirrm lib/R/library/tools/libs +@dirrm lib/R/library/tools/latex +@dirrm lib/R/library/tools/html +@dirrm lib/R/library/tools/help +@dirrm lib/R/library/tools/Sweave +@dirrm lib/R/library/tools/R-ex +@dirrm lib/R/library/tools/R +@dirrm lib/R/library/tools/Meta +@dirrm lib/R/library/tools +@dirrm lib/R/library/tcltk/man +@dirrm lib/R/library/tcltk/libs +@dirrm lib/R/library/tcltk/latex +@dirrm lib/R/library/tcltk/html +@dirrm lib/R/library/tcltk/help +@dirrm lib/R/library/tcltk/exec +@dirrm lib/R/library/tcltk/demo +@dirrm lib/R/library/tcltk/R-ex +@dirrm lib/R/library/tcltk/R +@dirrm lib/R/library/tcltk/Meta +@dirrm lib/R/library/tcltk +@dirrm lib/R/library/survival/man +@dirrm lib/R/library/survival/libs +@dirrm lib/R/library/survival/latex +@dirrm lib/R/library/survival/html +@dirrm lib/R/library/survival/help +@dirrm lib/R/library/survival/data +@dirrm lib/R/library/survival/R-ex +@dirrm lib/R/library/survival/R +@dirrm lib/R/library/survival/Meta +@dirrm lib/R/library/survival +@dirrm lib/R/library/stepfun/man +@dirrm lib/R/library/stepfun/latex +@dirrm lib/R/library/stepfun/html +@dirrm lib/R/library/stepfun/help +@dirrm lib/R/library/stepfun/R-ex +@dirrm lib/R/library/stepfun/R +@dirrm lib/R/library/stepfun/Meta +@dirrm lib/R/library/stepfun +@dirrm lib/R/library/splines/man +@dirrm lib/R/library/splines/libs +@dirrm lib/R/library/splines/latex +@dirrm lib/R/library/splines/html +@dirrm lib/R/library/splines/help +@dirrm lib/R/library/splines/R-ex +@dirrm lib/R/library/splines/R +@dirrm lib/R/library/splines/Meta +@dirrm lib/R/library/splines +@dirrm lib/R/library/spatial/ppdata +@dirrm lib/R/library/spatial/man +@dirrm lib/R/library/spatial/libs +@dirrm lib/R/library/spatial/latex +@dirrm lib/R/library/spatial/html +@dirrm lib/R/library/spatial/help +@dirrm lib/R/library/spatial/R-ex +@dirrm lib/R/library/spatial/R +@dirrm lib/R/library/spatial/Meta +@dirrm lib/R/library/spatial +@dirrm lib/R/library/rpart/man +@dirrm lib/R/library/rpart/libs +@dirrm lib/R/library/rpart/latex +@dirrm lib/R/library/rpart/html +@dirrm lib/R/library/rpart/help +@dirrm lib/R/library/rpart/data +@dirrm lib/R/library/rpart/R-ex +@dirrm lib/R/library/rpart/R +@dirrm lib/R/library/rpart/Meta +@dirrm lib/R/library/rpart +@dirrm lib/R/library/nnet/man +@dirrm lib/R/library/nnet/libs +@dirrm lib/R/library/nnet/latex +@dirrm lib/R/library/nnet/html +@dirrm lib/R/library/nnet/help +@dirrm lib/R/library/nnet/R-ex +@dirrm lib/R/library/nnet/R +@dirrm lib/R/library/nnet/Meta +@dirrm lib/R/library/nnet +@dirrm lib/R/library/nls/man +@dirrm lib/R/library/nls/libs +@dirrm lib/R/library/nls/latex +@dirrm lib/R/library/nls/html +@dirrm lib/R/library/nls/help +@dirrm lib/R/library/nls/data +@dirrm lib/R/library/nls/R-ex +@dirrm lib/R/library/nls/R +@dirrm lib/R/library/nls/Meta +@dirrm lib/R/library/nls +@dirrm lib/R/library/nlme/scripts +@dirrm lib/R/library/nlme/mlbook +@dirrm lib/R/library/nlme/man +@dirrm lib/R/library/nlme/libs +@dirrm lib/R/library/nlme/latex +@dirrm lib/R/library/nlme/html +@dirrm lib/R/library/nlme/help +@dirrm lib/R/library/nlme/data +@dirrm lib/R/library/nlme/R-ex +@dirrm lib/R/library/nlme/R +@dirrm lib/R/library/nlme/Meta +@dirrm lib/R/library/nlme +@dirrm lib/R/library/mva/man +@dirrm lib/R/library/mva/libs +@dirrm lib/R/library/mva/latex +@dirrm lib/R/library/mva/html +@dirrm lib/R/library/mva/help +@dirrm lib/R/library/mva/data +@dirrm lib/R/library/mva/R-ex +@dirrm lib/R/library/mva/R +@dirrm lib/R/library/mva/Meta +@dirrm lib/R/library/mva +@dirrm lib/R/library/modreg/man +@dirrm lib/R/library/modreg/libs +@dirrm lib/R/library/modreg/latex +@dirrm lib/R/library/modreg/html +@dirrm lib/R/library/modreg/help +@dirrm lib/R/library/modreg/data +@dirrm lib/R/library/modreg/R-ex +@dirrm lib/R/library/modreg/R +@dirrm lib/R/library/modreg/Meta +@dirrm lib/R/library/modreg +@dirrm lib/R/library/mgcv/man +@dirrm lib/R/library/mgcv/libs +@dirrm lib/R/library/mgcv/latex +@dirrm lib/R/library/mgcv/html +@dirrm lib/R/library/mgcv/help +@dirrm lib/R/library/mgcv/R-ex +@dirrm lib/R/library/mgcv/R +@dirrm lib/R/library/mgcv/Meta +@dirrm lib/R/library/mgcv +@dirrm lib/R/library/methods/man +@dirrm lib/R/library/methods/libs +@dirrm lib/R/library/methods/latex +@dirrm lib/R/library/methods/html +@dirrm lib/R/library/methods/help +@dirrm lib/R/library/methods/R-ex +@dirrm lib/R/library/methods/R +@dirrm lib/R/library/methods/Meta +@dirrm lib/R/library/methods +@dirrm lib/R/library/lqs/man +@dirrm lib/R/library/lqs/libs +@dirrm lib/R/library/lqs/latex +@dirrm lib/R/library/lqs/html +@dirrm lib/R/library/lqs/help +@dirrm lib/R/library/lqs/R-ex +@dirrm lib/R/library/lqs/R +@dirrm lib/R/library/lqs/Meta +@dirrm lib/R/library/lqs +@dirrm lib/R/library/lattice/man +@dirrm lib/R/library/lattice/libs +@dirrm lib/R/library/lattice/latex +@dirrm lib/R/library/lattice/html +@dirrm lib/R/library/lattice/help +@dirrm lib/R/library/lattice/demo +@dirrm lib/R/library/lattice/data +@dirrm lib/R/library/lattice/R-ex +@dirrm lib/R/library/lattice/R +@dirrm lib/R/library/lattice/Meta +@dirrm lib/R/library/lattice +@dirrm lib/R/library/grid/man +@dirrm lib/R/library/grid/libs +@dirrm lib/R/library/grid/latex +@dirrm lib/R/library/grid/html +@dirrm lib/R/library/grid/help +@dirrm lib/R/library/grid/doc +@dirrm lib/R/library/grid/R-ex +@dirrm lib/R/library/grid/R +@dirrm lib/R/library/grid/Meta +@dirrm lib/R/library/grid +@dirrm lib/R/library/foreign/man +@dirrm lib/R/library/foreign/libs +@dirrm lib/R/library/foreign/latex +@dirrm lib/R/library/foreign/html +@dirrm lib/R/library/foreign/help +@dirrm lib/R/library/foreign/R-ex +@dirrm lib/R/library/foreign/R +@dirrm lib/R/library/foreign/Meta +@dirrm lib/R/library/foreign +@dirrm lib/R/library/eda/man +@dirrm lib/R/library/eda/libs +@dirrm lib/R/library/eda/latex +@dirrm lib/R/library/eda/html +@dirrm lib/R/library/eda/help +@dirrm lib/R/library/eda/demo +@dirrm lib/R/library/eda/R-ex +@dirrm lib/R/library/eda/R +@dirrm lib/R/library/eda/Meta +@dirrm lib/R/library/eda +@dirrm lib/R/library/ctest/man +@dirrm lib/R/library/ctest/libs +@dirrm lib/R/library/ctest/latex +@dirrm lib/R/library/ctest/html +@dirrm lib/R/library/ctest/help +@dirrm lib/R/library/ctest/R-ex +@dirrm lib/R/library/ctest/R +@dirrm lib/R/library/ctest/Meta +@dirrm lib/R/library/ctest +@dirrm lib/R/library/cluster/man +@dirrm lib/R/library/cluster/libs +@dirrm lib/R/library/cluster/latex +@dirrm lib/R/library/cluster/html +@dirrm lib/R/library/cluster/help +@dirrm lib/R/library/cluster/data +@dirrm lib/R/library/cluster/R-ex +@dirrm lib/R/library/cluster/R +@dirrm lib/R/library/cluster/Meta +@dirrm lib/R/library/cluster +@dirrm lib/R/library/class/man +@dirrm lib/R/library/class/libs +@dirrm lib/R/library/class/latex +@dirrm lib/R/library/class/html +@dirrm lib/R/library/class/help +@dirrm lib/R/library/class/R-ex +@dirrm lib/R/library/class/R +@dirrm lib/R/library/class/Meta +@dirrm lib/R/library/class +@dirrm lib/R/library/boot/man +@dirrm lib/R/library/boot/latex +@dirrm lib/R/library/boot/html +@dirrm lib/R/library/boot/help +@dirrm lib/R/library/boot/data +@dirrm lib/R/library/boot/R-ex +@dirrm lib/R/library/boot/R +@dirrm lib/R/library/boot/Meta +@dirrm lib/R/library/boot +@dirrm lib/R/library/base/man +@dirrm lib/R/library/base/latex +@dirrm lib/R/library/base/html +@dirrm lib/R/library/base/help +@dirrm lib/R/library/base/demo +@dirrm lib/R/library/base/data +@dirrm lib/R/library/base/R-ex +@dirrm lib/R/library/base/R +@dirrm lib/R/library/base/Meta +@dirrm lib/R/library/base +@dirrm lib/R/library/MASS/scripts3 +@dirrm lib/R/library/MASS/scripts +@dirrm lib/R/library/MASS/man +@dirrm lib/R/library/MASS/libs +@dirrm lib/R/library/MASS/latex +@dirrm lib/R/library/MASS/html +@dirrm lib/R/library/MASS/help +@dirrm lib/R/library/MASS/data +@dirrm lib/R/library/MASS/R-ex +@dirrm lib/R/library/MASS/R +@dirrm lib/R/library/MASS/Meta +@dirrm lib/R/library/MASS +@dirrm lib/R/library/KernSmooth/man +@dirrm lib/R/library/KernSmooth/libs +@dirrm lib/R/library/KernSmooth/latex +@dirrm lib/R/library/KernSmooth/html +@dirrm lib/R/library/KernSmooth/help +@dirrm lib/R/library/KernSmooth/R-ex +@dirrm lib/R/library/KernSmooth/R +@dirrm lib/R/library/KernSmooth/Meta +@dirrm lib/R/library/KernSmooth +@dirrm lib/R/library +@dirrm lib/R/include/R_ext +@dirrm lib/R/include +@dirrm lib/R/etc +@dirrm lib/R/doc/manual +@dirrm lib/R/doc/html/search +@dirrm lib/R/doc/html +@dirrm lib/R/doc +@dirrm lib/R/bin +@dirrm lib/R/afm @dirrm lib/R diff --git a/math/R/Makefile b/math/R/Makefile index ed7f5be..139ca8a 100644 --- a/math/R/Makefile +++ b/math/R/Makefile @@ -6,7 +6,7 @@ # PORTNAME= R -PORTVERSION= 1.7.0 +PORTVERSION= 1.7.1 CATEGORIES= math MASTER_SITES= http://cran.r-project.org/src/base/ \ ftp://cran.r-project.org/pub/R/src/base/ \ @@ -26,13 +26,18 @@ MAINTAINER= vangyzen@stat.duke.edu COMMENT= A language for statistical computing and graphics LIB_DEPENDS= tcl84:${PORTSDIR}/lang/tcl84 \ - tk84:${PORTSDIR}/x11-toolkits/tk84 + tk84:${PORTSDIR}/x11-toolkits/tk84 \ + jpeg.9:${PORTSDIR}/graphics/jpeg \ + png.5:${PORTSDIR}/graphics/png \ + pcre.0:${PORTSDIR}/devel/pcre \ + lapack.3:${PORTSDIR}/math/lapack GNU_CONFIGURE= yes USE_XLIB= yes USE_PERL5= yes CONFIGURE_ENV= R_PAPERSIZE=${PAPERSIZE} \ INSTALL_DATA="${INSTALL} ${COPY} ${_SHROWNGRP} -m 644" +CONFIGURE_ARGS= --with-lapack PAPERSIZE?= letter .if ${PAPERSIZE} != letter && ${PAPERSIZE} != a4 diff --git a/math/R/distinfo b/math/R/distinfo index 63db5a7..a438e43 100644 --- a/math/R/distinfo +++ b/math/R/distinfo @@ -1 +1 @@ -MD5 (R-1.7.0.tgz) = 292dbe4dc47e6b492ff72a62471654ca +MD5 (R-1.7.1.tgz) = 833c2a9a62818211f2f9f0353ecd9bbd diff --git a/math/R/pkg-plist b/math/R/pkg-plist index 983fdcb..fff8453 100644 --- a/math/R/pkg-plist +++ b/math/R/pkg-plist @@ -106,7 +106,6 @@ lib/R/bin/build lib/R/bin/check lib/R/bin/config lib/R/bin/f77 -lib/R/bin/libRlapack.so lib/R/bin/libtool lib/R/bin/pager lib/R/bin/texi2dvi @@ -492,6 +491,7 @@ lib/R/library/MASS/help/lh lib/R/library/MASS/help/lm.gls lib/R/library/MASS/help/lm.ridge lib/R/library/MASS/help/loglm +lib/R/library/MASS/help/loglm1 lib/R/library/MASS/help/logtrans lib/R/library/MASS/help/mammals lib/R/library/MASS/help/mca @@ -650,6 +650,7 @@ lib/R/library/MASS/html/lh.html lib/R/library/MASS/html/lm.gls.html lib/R/library/MASS/html/lm.ridge.html lib/R/library/MASS/html/loglm.html +lib/R/library/MASS/html/loglm1.html lib/R/library/MASS/html/logtrans.html lib/R/library/MASS/html/mammals.html lib/R/library/MASS/html/mca.html @@ -807,6 +808,7 @@ lib/R/library/MASS/latex/lh.tex lib/R/library/MASS/latex/lm.gls.tex lib/R/library/MASS/latex/lm.ridge.tex lib/R/library/MASS/latex/loglm.tex +lib/R/library/MASS/latex/loglm1.tex lib/R/library/MASS/latex/logtrans.tex lib/R/library/MASS/latex/mammals.tex lib/R/library/MASS/latex/mca.tex @@ -1157,6 +1159,7 @@ lib/R/library/base/R-ex/function.R lib/R/library/base/R-ex/gc.R lib/R/library/base/R-ex/gc.time.R lib/R/library/base/R-ex/get.R +lib/R/library/base/R-ex/getAnywhere.R lib/R/library/base/R-ex/getFromNamespace.R lib/R/library/base/R-ex/getNativeSymbolInfo.R lib/R/library/base/R-ex/getS3method.R @@ -1244,7 +1247,7 @@ lib/R/library/base/R-ex/match.fun.R lib/R/library/base/R-ex/matmult.R lib/R/library/base/R-ex/matplot.R lib/R/library/base/R-ex/matrix.R -lib/R/library/base/R-ex/max.col.R +lib/R/library/base/R-ex/maxCol.R lib/R/library/base/R-ex/mean.R lib/R/library/base/R-ex/median.R lib/R/library/base/R-ex/memory.profile.R @@ -1380,6 +1383,7 @@ lib/R/library/base/R-ex/rowsum.R lib/R/library/base/R-ex/rug.R lib/R/library/base/R-ex/sample.R lib/R/library/base/R-ex/save.R +lib/R/library/base/R-ex/savehistory.R lib/R/library/base/R-ex/scale.R lib/R/library/base/R-ex/scan.R lib/R/library/base/R-ex/screen.R @@ -1841,6 +1845,7 @@ lib/R/library/base/help/gc lib/R/library/base/help/gc.time lib/R/library/base/help/gctorture lib/R/library/base/help/get +lib/R/library/base/help/getAnywhere lib/R/library/base/help/getFromNamespace lib/R/library/base/help/getNativeSymbolInfo lib/R/library/base/help/getS3method @@ -1944,7 +1949,7 @@ lib/R/library/base/help/match.fun lib/R/library/base/help/matmult lib/R/library/base/help/matplot lib/R/library/base/help/matrix -lib/R/library/base/help/max.col +lib/R/library/base/help/maxCol lib/R/library/base/help/mean lib/R/library/base/help/median lib/R/library/base/help/memory.profile @@ -2522,6 +2527,7 @@ lib/R/library/base/html/gc.html lib/R/library/base/html/gc.time.html lib/R/library/base/html/gctorture.html lib/R/library/base/html/get.html +lib/R/library/base/html/getAnywhere.html lib/R/library/base/html/getFromNamespace.html lib/R/library/base/html/getNativeSymbolInfo.html lib/R/library/base/html/getS3method.html @@ -2625,7 +2631,7 @@ lib/R/library/base/html/match.html lib/R/library/base/html/matmult.html lib/R/library/base/html/matplot.html lib/R/library/base/html/matrix.html -lib/R/library/base/html/max.col.html +lib/R/library/base/html/maxCol.html lib/R/library/base/html/mean.html lib/R/library/base/html/median.html lib/R/library/base/html/memory.profile.html @@ -3202,6 +3208,7 @@ lib/R/library/base/latex/gc.tex lib/R/library/base/latex/gc.time.tex lib/R/library/base/latex/gctorture.tex lib/R/library/base/latex/get.tex +lib/R/library/base/latex/getAnywhere.tex lib/R/library/base/latex/getFromNamespace.tex lib/R/library/base/latex/getNativeSymbolInfo.tex lib/R/library/base/latex/getS3method.tex @@ -3305,7 +3312,7 @@ lib/R/library/base/latex/match.tex lib/R/library/base/latex/matmult.tex lib/R/library/base/latex/matplot.tex lib/R/library/base/latex/matrix.tex -lib/R/library/base/latex/max.col.tex +lib/R/library/base/latex/maxCol.tex lib/R/library/base/latex/mean.tex lib/R/library/base/latex/median.tex lib/R/library/base/latex/memory.profile.tex @@ -4040,6 +4047,7 @@ lib/R/library/cluster/R-ex/flower.R lib/R/library/cluster/R-ex/lower.to.upper.tri.inds.R lib/R/library/cluster/R-ex/mona.R lib/R/library/cluster/R-ex/pam.R +lib/R/library/cluster/R-ex/pam.object.R lib/R/library/cluster/R-ex/plot.agnes.R lib/R/library/cluster/R-ex/plot.diana.R lib/R/library/cluster/R-ex/plot.partition.R @@ -5267,6 +5275,7 @@ lib/R/library/nlme/DESCRIPTION lib/R/library/nlme/INDEX lib/R/library/nlme/Meta/Rd.rds lib/R/library/nlme/Meta/data.rds +lib/R/library/nlme/NAMESPACE lib/R/library/nlme/R-ex/ACF.R lib/R/library/nlme/R-ex/ACF.gls.R lib/R/library/nlme/R-ex/ACF.lme.R @@ -5354,14 +5363,10 @@ lib/R/library/nlme/R-ex/augPred.R lib/R/library/nlme/R-ex/balancedGrouped.R lib/R/library/nlme/R-ex/bdf.R lib/R/library/nlme/R-ex/coef.corStruct.R -lib/R/library/nlme/R-ex/coef.gls.R lib/R/library/nlme/R-ex/coef.gnls.R lib/R/library/nlme/R-ex/coef.lmList.R lib/R/library/nlme/R-ex/coef.lme.R lib/R/library/nlme/R-ex/coef.modelStruct.R -lib/R/library/nlme/R-ex/coef.pdCompSymm.R -lib/R/library/nlme/R-ex/coef.pdDiag.R -lib/R/library/nlme/R-ex/coef.pdIdent.R lib/R/library/nlme/R-ex/coef.pdMat.R lib/R/library/nlme/R-ex/coef.reStruct.R lib/R/library/nlme/R-ex/coef.varFunc.R @@ -5390,26 +5395,13 @@ lib/R/library/nlme/R-ex/corSpher.R lib/R/library/nlme/R-ex/corSymm.R lib/R/library/nlme/R-ex/ergoStool.R lib/R/library/nlme/R-ex/fdHess.R -lib/R/library/nlme/R-ex/fitted.gls.R -lib/R/library/nlme/R-ex/fitted.gnls.R lib/R/library/nlme/R-ex/fitted.lmList.R lib/R/library/nlme/R-ex/fitted.lme.R lib/R/library/nlme/R-ex/fixed.effects.R lib/R/library/nlme/R-ex/fixef.lmList.R -lib/R/library/nlme/R-ex/fixef.lme.R -lib/R/library/nlme/R-ex/formula.corStruct.R -lib/R/library/nlme/R-ex/formula.gls.R -lib/R/library/nlme/R-ex/formula.gnls.R -lib/R/library/nlme/R-ex/formula.groupedData.R -lib/R/library/nlme/R-ex/formula.lmList.R -lib/R/library/nlme/R-ex/formula.lme.R -lib/R/library/nlme/R-ex/formula.modelStruct.R -lib/R/library/nlme/R-ex/formula.nlme.R -lib/R/library/nlme/R-ex/formula.nlsList.R lib/R/library/nlme/R-ex/formula.pdBlocked.R lib/R/library/nlme/R-ex/formula.pdMat.R lib/R/library/nlme/R-ex/formula.reStruct.R -lib/R/library/nlme/R-ex/formula.varFunc.R lib/R/library/nlme/R-ex/gapply.R lib/R/library/nlme/R-ex/getCovariate.R lib/R/library/nlme/R-ex/getCovariate.corStruct.R @@ -5429,10 +5421,6 @@ lib/R/library/nlme/R-ex/getGroups.lme.R lib/R/library/nlme/R-ex/getGroups.varFunc.R lib/R/library/nlme/R-ex/getGroupsFormula.R lib/R/library/nlme/R-ex/getResponse.R -lib/R/library/nlme/R-ex/getResponse.data.frame.R -lib/R/library/nlme/R-ex/getResponse.gls.R -lib/R/library/nlme/R-ex/getResponse.lmList.R -lib/R/library/nlme/R-ex/getResponse.lme.R lib/R/library/nlme/R-ex/getResponseFormula.R lib/R/library/nlme/R-ex/getVarCov.R lib/R/library/nlme/R-ex/gls.R @@ -5449,7 +5437,6 @@ lib/R/library/nlme/R-ex/intervals.lmList.R lib/R/library/nlme/R-ex/intervals.lme.R lib/R/library/nlme/R-ex/isBalanced.R lib/R/library/nlme/R-ex/isInitialized.R -lib/R/library/nlme/R-ex/isInitialized.reStruct.R lib/R/library/nlme/R-ex/lmList.R lib/R/library/nlme/R-ex/lmList.groupedData.R lib/R/library/nlme/R-ex/lme.R @@ -5462,7 +5449,6 @@ lib/R/library/nlme/R-ex/logDet.corStruct.R lib/R/library/nlme/R-ex/logDet.pdMat.R lib/R/library/nlme/R-ex/logDet.reStruct.R lib/R/library/nlme/R-ex/logLik.corStruct.R -lib/R/library/nlme/R-ex/logLik.gls.R lib/R/library/nlme/R-ex/logLik.gnls.R lib/R/library/nlme/R-ex/logLik.lmList.R lib/R/library/nlme/R-ex/logLik.lme.R @@ -5513,24 +5499,8 @@ lib/R/library/nlme/R-ex/predict.gnls.R lib/R/library/nlme/R-ex/predict.lmList.R lib/R/library/nlme/R-ex/predict.lme.R lib/R/library/nlme/R-ex/predict.nlme.R -lib/R/library/nlme/R-ex/print.anova.lme.R -lib/R/library/nlme/R-ex/print.corStruct.R 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-lib/R/library/nlme/html/isInitialized.reStruct.html lib/R/library/nlme/html/lmList.groupedData.html lib/R/library/nlme/html/lmList.html lib/R/library/nlme/html/lme.groupedData.html @@ -6149,7 +6049,6 @@ lib/R/library/nlme/html/logDet.html lib/R/library/nlme/html/logDet.pdMat.html lib/R/library/nlme/html/logDet.reStruct.html lib/R/library/nlme/html/logLik.corStruct.html -lib/R/library/nlme/html/logLik.gls.html lib/R/library/nlme/html/logLik.glsStruct.html lib/R/library/nlme/html/logLik.gnls.html lib/R/library/nlme/html/logLik.gnlsStruct.html @@ -6161,7 +6060,6 @@ lib/R/library/nlme/html/logLik.varFunc.html lib/R/library/nlme/html/model.matrix.reStruct.html lib/R/library/nlme/html/needUpdate.html lib/R/library/nlme/html/needUpdate.modelStruct.html -lib/R/library/nlme/html/nlme-internal.html lib/R/library/nlme/html/nlme.html lib/R/library/nlme/html/nlme.nlsList.html lib/R/library/nlme/html/nlmeControl.html @@ -6207,24 +6105,8 @@ lib/R/library/nlme/html/predict.gnls.html 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-lib/R/library/nlme/latex/print.summary.gls.tex -lib/R/library/nlme/latex/print.summary.lmList.tex -lib/R/library/nlme/latex/print.summary.lme.tex -lib/R/library/nlme/latex/print.summary.modelStruct.tex lib/R/library/nlme/latex/print.summary.pdMat.tex -lib/R/library/nlme/latex/print.summary.varFunc.tex lib/R/library/nlme/latex/print.varFunc.tex -lib/R/library/nlme/latex/pruneLevels.tex lib/R/library/nlme/latex/qqnorm.gls.tex lib/R/library/nlme/latex/qqnorm.lme.tex lib/R/library/nlme/latex/quinModel.tex @@ -6612,6 +6450,7 @@ lib/R/library/nlme/scripts/ch04.R lib/R/library/nlme/scripts/ch05.R lib/R/library/nlme/scripts/ch06.R lib/R/library/nlme/scripts/ch08.R +lib/R/library/nlme/scripts/sims.rda lib/R/library/nls/CONTENTS lib/R/library/nls/DESCRIPTION lib/R/library/nls/INDEX @@ -7194,6 +7033,7 @@ lib/R/library/survival/R-ex/residuals.survreg.R lib/R/library/survival/R-ex/ridge.R lib/R/library/survival/R-ex/strata.R lib/R/library/survival/R-ex/summary.survfit.R 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+@dirrm lib/R/library/lqs +@dirrm lib/R/library/lattice/man +@dirrm lib/R/library/lattice/libs +@dirrm lib/R/library/lattice/latex +@dirrm lib/R/library/lattice/html +@dirrm lib/R/library/lattice/help +@dirrm lib/R/library/lattice/demo +@dirrm lib/R/library/lattice/data +@dirrm lib/R/library/lattice/R-ex +@dirrm lib/R/library/lattice/R +@dirrm lib/R/library/lattice/Meta +@dirrm lib/R/library/lattice +@dirrm lib/R/library/grid/man +@dirrm lib/R/library/grid/libs +@dirrm lib/R/library/grid/latex +@dirrm lib/R/library/grid/html +@dirrm lib/R/library/grid/help +@dirrm lib/R/library/grid/doc +@dirrm lib/R/library/grid/R-ex +@dirrm lib/R/library/grid/R +@dirrm lib/R/library/grid/Meta +@dirrm lib/R/library/grid +@dirrm lib/R/library/foreign/man +@dirrm lib/R/library/foreign/libs +@dirrm lib/R/library/foreign/latex +@dirrm lib/R/library/foreign/html +@dirrm lib/R/library/foreign/help +@dirrm lib/R/library/foreign/R-ex +@dirrm lib/R/library/foreign/R +@dirrm lib/R/library/foreign/Meta +@dirrm lib/R/library/foreign +@dirrm lib/R/library/eda/man +@dirrm lib/R/library/eda/libs +@dirrm lib/R/library/eda/latex +@dirrm lib/R/library/eda/html +@dirrm lib/R/library/eda/help +@dirrm lib/R/library/eda/demo +@dirrm lib/R/library/eda/R-ex +@dirrm lib/R/library/eda/R +@dirrm lib/R/library/eda/Meta +@dirrm lib/R/library/eda +@dirrm lib/R/library/ctest/man +@dirrm lib/R/library/ctest/libs +@dirrm lib/R/library/ctest/latex +@dirrm lib/R/library/ctest/html +@dirrm lib/R/library/ctest/help +@dirrm lib/R/library/ctest/R-ex +@dirrm lib/R/library/ctest/R +@dirrm lib/R/library/ctest/Meta +@dirrm lib/R/library/ctest +@dirrm lib/R/library/cluster/man +@dirrm lib/R/library/cluster/libs +@dirrm lib/R/library/cluster/latex +@dirrm lib/R/library/cluster/html +@dirrm lib/R/library/cluster/help +@dirrm lib/R/library/cluster/data +@dirrm lib/R/library/cluster/R-ex +@dirrm lib/R/library/cluster/R +@dirrm lib/R/library/cluster/Meta +@dirrm lib/R/library/cluster +@dirrm lib/R/library/class/man +@dirrm lib/R/library/class/libs +@dirrm lib/R/library/class/latex +@dirrm lib/R/library/class/html +@dirrm lib/R/library/class/help +@dirrm lib/R/library/class/R-ex +@dirrm lib/R/library/class/R +@dirrm lib/R/library/class/Meta +@dirrm lib/R/library/class +@dirrm lib/R/library/boot/man +@dirrm lib/R/library/boot/latex +@dirrm lib/R/library/boot/html +@dirrm lib/R/library/boot/help +@dirrm lib/R/library/boot/data +@dirrm lib/R/library/boot/R-ex +@dirrm lib/R/library/boot/R +@dirrm lib/R/library/boot/Meta +@dirrm lib/R/library/boot +@dirrm lib/R/library/base/man +@dirrm lib/R/library/base/latex +@dirrm lib/R/library/base/html +@dirrm lib/R/library/base/help +@dirrm lib/R/library/base/demo +@dirrm lib/R/library/base/data +@dirrm lib/R/library/base/R-ex +@dirrm lib/R/library/base/R +@dirrm lib/R/library/base/Meta +@dirrm lib/R/library/base +@dirrm lib/R/library/MASS/scripts3 +@dirrm lib/R/library/MASS/scripts +@dirrm lib/R/library/MASS/man +@dirrm lib/R/library/MASS/libs +@dirrm lib/R/library/MASS/latex +@dirrm lib/R/library/MASS/html +@dirrm lib/R/library/MASS/help +@dirrm lib/R/library/MASS/data +@dirrm lib/R/library/MASS/R-ex +@dirrm lib/R/library/MASS/R +@dirrm lib/R/library/MASS/Meta +@dirrm lib/R/library/MASS +@dirrm lib/R/library/KernSmooth/man +@dirrm lib/R/library/KernSmooth/libs +@dirrm lib/R/library/KernSmooth/latex +@dirrm lib/R/library/KernSmooth/html +@dirrm lib/R/library/KernSmooth/help +@dirrm lib/R/library/KernSmooth/R-ex +@dirrm lib/R/library/KernSmooth/R +@dirrm lib/R/library/KernSmooth/Meta +@dirrm lib/R/library/KernSmooth +@dirrm lib/R/library +@dirrm lib/R/include/R_ext +@dirrm lib/R/include +@dirrm lib/R/etc +@dirrm lib/R/doc/manual +@dirrm lib/R/doc/html/search +@dirrm lib/R/doc/html +@dirrm lib/R/doc +@dirrm lib/R/bin +@dirrm lib/R/afm @dirrm lib/R |
