Seaview is a multiple DNA sequence alignment editor.

It is capable of align DNA sequences from various organisms
and assign their position in the phylogenic tree.
PR:		ports/5229
Submitted by:	Frank Chen Hsiung Chan <frankch@waru.life.nthu.edu.tw>

6 files changed, 72 insertions, 0 deletions

diff --git a/biology/seaview/Makefile b/biology/seaview/Makefile
new file mode 100644
index 0000000..b08dd09
--- /dev/null
+++ b/biology/seaview/Makefile
@@ -0,0 +1,31 @@
+# New ports collection Makefile for: seaview
+# Version required:     1.0
+# Date created:         Dec 5 1997
+# Whom:                 frankch@waru.life.nthu.edu.tw
+#
+# $Id$
+#
+
+DISTNAME=       seaview
+PKGNAME=        seaview-1.0
+CATEGORIES=     biology x11
+MASTER_SITES=   ftp://biom3.univ-lyon1.fr/pub/mol_phylogeny/seaview/
+EXTRACT_SUFX=	.tar
+
+MAINTAINER=     frankch@waru.life.nthu.edu.tw
+
+LIB_DEPEND=	xforms\\.0\\.:${PORTSDIR}/x11/xforms
+
+USE_X11=	YES
+NO_WRKSUBDIR=	YES
+EXTRACT_BEFORE_ARGS=	-xf
+
+do-install:
+	@ ${INSTALL_PROGRAM} ${WRKSRC}/${DISTNAME} ${PREFIX}/bin
+	@ (mkdir ${PREFIX}/lib/X11/seaview)
+	@ ${INSTALL_DATA} ${WRKSRC}/seaview.help ${PREFIX}/lib/X11/seaview
+
+post-install:
+	@ ${CAT} ${PKGDIR}/DESCR
+
+.include <bsd.port.mk>
diff --git a/biology/seaview/distinfo b/biology/seaview/distinfo
new file mode 100644
index 0000000..6314b12
--- /dev/null
+++ b/biology/seaview/distinfo
@@ -0,0 +1 @@
+MD5 (seaview.tar) = 15ccf55fb21fe06a01862a1b963640c5
diff --git a/biology/seaview/files/patch-aa b/biology/seaview/files/patch-aa
new file mode 100644
index 0000000..3e326a8
--- /dev/null
+++ b/biology/seaview/files/patch-aa
@@ -0,0 +1,20 @@
+--- Makefile.orig	Fri Dec  5 13:22:24 1997
++++ Makefile	Fri Dec  5 13:20:45 1997
+@@ -0,0 +1,17 @@
++#matpt.h
++#seaview.h
++CC	= gcc
++CFLAGS+= -I/usr/X11R6/include
++LIBS	= -L/usr/X11R6/lib -lxforms -lX11 -lm
++SRCS	= align.c load_seq.c regions.c seaview.c use_mase_files.c xfmatpt.c
++OBJS	= align.o load_seq.o regions.o seaview.o use_mase_files.o xfmatpt.o
++
++all: seaview
++
++seaview: $(OBJS)
++	$(CC) -o seaview $(OBJS) $(LIBS)
++
++c.o.: $(SRCS)
++	$(CC) $(CFLAGS) -c $(SRCS)
++
++
diff --git a/biology/seaview/pkg-comment b/biology/seaview/pkg-comment
new file mode 100644
index 0000000..624e358
--- /dev/null
+++ b/biology/seaview/pkg-comment
@@ -0,0 +1 @@
+Multiple DNA sequence alignment editor
diff --git a/biology/seaview/pkg-descr b/biology/seaview/pkg-descr
new file mode 100644
index 0000000..e45ecb6
--- /dev/null
+++ b/biology/seaview/pkg-descr
@@ -0,0 +1,16 @@
+Seaview is a multiple DNA sequence alignment editor.
+You can align DNA sequences from several organisms, and find out their
+relative postions in phylogenic tree.
+
+File test.mase can be used as an example file.
+Open the on-line help window through button 'Help' to learn seaview usage.
+
+The HomePage of seaview is at
+        http://acnuc.univ-lyon1.fr/phylogeny/seaview.html
+
+*****************************************************************************
+*   The help file (seaview.help) is located in /usr/X11R6/lib/X11/seaview/ .
+*   Add an entry in your Xresources or Xdefaults file with:
+*
+*   seaview*helpfile:	/usr/X11R6/lib/X11/seaview/seaview.help
+*****************************************************************************
diff --git a/biology/seaview/pkg-plist b/biology/seaview/pkg-plist
new file mode 100644
index 0000000..b4a419f
--- /dev/null
+++ b/biology/seaview/pkg-plist
@@ -0,0 +1,3 @@
+bin/seaview
+lib/X11/seaview/seaview.help
+@dirrm lib/X11/seaview