Add treeviewx 0.1.1, a phylogenetic tree viewer.

PR:		29770
Submitted by:	Tony Maher <tonym@biolateral.com.au>

8 files changed, 81 insertions, 0 deletions

diff --git a/biology/treeviewx/Makefile b/biology/treeviewx/Makefile
new file mode 100644
index 0000000..ca08369
--- /dev/null
+++ b/biology/treeviewx/Makefile
@@ -0,0 +1,21 @@
+# Ports collection makefile for:	treeviewx
+# Date created:				04 August 2001
+# Whom:					tonym
+#
+# $FreeBSD$
+#
+
+PORTNAME=	treeviewx
+PORTVERSION=	0.1.1
+CATEGORIES=	biology
+MASTER_SITES=	http://darwin.zoology.gla.ac.uk/~rpage/treeviewx/
+DISTNAME=	tv-${PORTVERSION}
+
+MAINTAINER=	tonym@biolateral.com.au
+
+LIB_DEPENDS=	wx_gtk.2:${PORTSDIR}/x11-toolkits/wxgtk
+
+USE_GMAKE=	yes
+GNU_CONFIGURE=	yes
+
+.include <bsd.port.mk>
diff --git a/biology/treeviewx/distinfo b/biology/treeviewx/distinfo
new file mode 100644
index 0000000..9064502
--- /dev/null
+++ b/biology/treeviewx/distinfo
@@ -0,0 +1 @@
+MD5 (tv-0.1.1.tar.gz) = 8cb3111130fa4623fb74d458659516fc
diff --git a/biology/treeviewx/files/patch-Makefile.am b/biology/treeviewx/files/patch-Makefile.am
new file mode 100644
index 0000000..2aa04c0
--- /dev/null
+++ b/biology/treeviewx/files/patch-Makefile.am
@@ -0,0 +1,11 @@
+--- Makefile.am.orig	Sat Aug  4 13:17:56 2001
++++ Makefile.am	Sat Aug  4 13:18:17 2001
+@@ -125,7 +125,7 @@
+ 
+ 
+ all:
+-	cd ncl-2.0/src; make libncl.a;   # Paul Lewis Nexus Class Library
++	cd ncl-2.0/src; $(MAKE) libncl.a;   # Paul Lewis Nexus Class Library
+ 	
+ 	${MAKE} $(PROGRAM);
+ 
diff --git a/biology/treeviewx/files/patch-Makefile.in b/biology/treeviewx/files/patch-Makefile.in
new file mode 100644
index 0000000..c443674
--- /dev/null
+++ b/biology/treeviewx/files/patch-Makefile.in
@@ -0,0 +1,28 @@
+--- Makefile.in.orig	Sat Aug  4 05:09:46 2001
++++ Makefile.in	Sat Aug  4 15:45:59 2001
+@@ -263,7 +263,7 @@
+ 	$(CC) -c $(CFLAGS) -I$(NCLDIR) -I$(TREELIBDIR) -I$(GPORTDIR)  -DUSE_WXWINDOWS  -o $@ $<
+ 
+ all:
+-	cd ncl-2.0/src; make libncl.a;   # Paul Lewis Nexus Class Library
++	cd ncl-2.0/src; $(MAKE) libncl.a;   # Paul Lewis Nexus Class Library
+ 
+ 	${MAKE} $(PROGRAM);
+ 
+@@ -273,6 +273,16 @@
+ tview.o : tview.cpp tview.h tproject.h
+ tv.o : tv.cpp tv.h tdoc.h tview.h tproject.h
+ tdoc.o: tdoc.cpp tdoc.h tview.h
++
++install : $(PROGRAM)
++	$(mkinstalldirs) $(DESTDIR)$(bindir)
++	@list='$(PROGRAM)'; for p in $$list; do \
++		if test -f $$p; then \
++			echo "  $(INSTALL_PROGRAM) $$p $(DESTDIR)$(bindir)/`echo $$p|sed '$(transform)'`"; \
++		$(INSTALL_PROGRAM) $$p $(DESTDIR)$(bindir)/`echo $$p|sed '$(transform)' `; \
++		else :; fi; \
++	done
++	
+ 
+ # Tell versions [3.59,3.63) of GNU make to not export all variables.
+ # Otherwise a system limit (for SysV at least) may be exceeded.
diff --git a/biology/treeviewx/files/patch-configure b/biology/treeviewx/files/patch-configure
new file mode 100644
index 0000000..e205838
--- /dev/null
+++ b/biology/treeviewx/files/patch-configure
@@ -0,0 +1,10 @@
+--- configure.orig	Thu Aug 16 15:55:01 2001
++++ configure	Thu Aug 16 15:55:13 2001
+@@ -520,7 +520,6 @@
+   ac_n= ac_c='\c' ac_t=
+ fi
+ 
+- (tview.cpp)
+ ac_aux_dir=
+ for ac_dir in $srcdir $srcdir/.. $srcdir/../..; do
+   if test -f $ac_dir/install-sh; then
diff --git a/biology/treeviewx/pkg-comment b/biology/treeviewx/pkg-comment
new file mode 100644
index 0000000..727dcca
--- /dev/null
+++ b/biology/treeviewx/pkg-comment
@@ -0,0 +1 @@
+A phylogenetic tree viewer
diff --git a/biology/treeviewx/pkg-descr b/biology/treeviewx/pkg-descr
new file mode 100644
index 0000000..c664fd3
--- /dev/null
+++ b/biology/treeviewx/pkg-descr
@@ -0,0 +1,8 @@
+"TreeView X is program to display phylogenetic trees on Unix-like platforms.
+It can read and display NEXUS and Newick format tree files (such as those
+output by PAUP*, ClustalX, TREE-PUZZLE, and other programs)." 
+
+WWW: http://darwin.zoology.gla.ac.uk/~rpage/treeviewx/
+
+--
+Tony Maher <tonym@biolateral.com.au>
diff --git a/biology/treeviewx/pkg-plist b/biology/treeviewx/pkg-plist
new file mode 100644
index 0000000..1a3fda3
--- /dev/null
+++ b/biology/treeviewx/pkg-plist
@@ -0,0 +1 @@
+bin/tv