- New upstream version; two patches incorporated.

PR:		90140
Submitted by:	Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
Approved by:	clement (mentor)

5 files changed, 9 insertions, 39 deletions

diff --git a/biology/seaview/Makefile b/biology/seaview/Makefile
index d04448f..9ebc79b 100644
--- a/biology/seaview/Makefile
+++ b/biology/seaview/Makefile
@@ -7,7 +7,7 @@
 #
 
 PORTNAME=	seaview
-PORTVERSION=	2005.13.07
+PORTVERSION=	2006.01.01
 CATEGORIES=	biology
 MASTER_SITES=	ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/seaview/
 DISTNAME=	${PORTNAME}
@@ -27,12 +27,12 @@ EXTRACT_BEFORE_ARGS=	#
 ALL_TARGET=	${PORTNAME}
 
 CFLAGS+=	-D HAVE_DIRENT_H \
-		-D DEFAULT_HELPFILE=${PREFIX}/lib/X11/seaview/seaview.help
+		-D DEFAULT_HELPFILE=${PREFIX}/lib/X11/${PORTNAME}/seaview.help
 
 do-install:
 	@${INSTALL_PROGRAM} ${WRKSRC}/${DISTNAME} ${PREFIX}/bin
 	@${INSTALL_SCRIPT} ${WRKSRC}/seaview_align.sh ${PREFIX}/bin
-	@${MKDIR} ${PREFIX}/lib/X11/seaview
-	@${INSTALL_DATA} ${WRKSRC}/seaview.help ${PREFIX}/lib/X11/seaview
+	@${MKDIR} ${PREFIX}/lib/X11/${PORTNAME}
+	@${INSTALL_DATA} ${WRKSRC}/seaview.help ${PREFIX}/lib/X11/${PORTNAME}
 
 .include <bsd.port.mk>
diff --git a/biology/seaview/distinfo b/biology/seaview/distinfo
index 7b53eba6..1dfebc2 100644
--- a/biology/seaview/distinfo
+++ b/biology/seaview/distinfo
@@ -1,3 +1,3 @@
-MD5 (seaview-2005.13.07/seaview.tar) = 0971b3485351f6a1f56a7b56ead2359c
-SHA256 (seaview-2005.13.07/seaview.tar) = 7f48c494e5bee5dacef28bab2a52eab8aff6b66ceff8fab47fe77a18de376fc5
-SIZE (seaview-2005.13.07/seaview.tar) = 595968
+MD5 (seaview-2006.01.01/seaview.tar) = 4d1d1406f5d9ae0a0edad7144742143b
+SHA256 (seaview-2006.01.01/seaview.tar) = ced1844ca3fc8181a9c811079dbc8e2ee67242ef49be113f761abad034ba8ba3
+SIZE (seaview-2006.01.01/seaview.tar) = 595968
diff --git a/biology/seaview/files/patch-Makefile b/biology/seaview/files/patch-Makefile
index 1928398..bd9c939 100644
--- a/biology/seaview/files/patch-Makefile
+++ b/biology/seaview/files/patch-Makefile
@@ -1,5 +1,5 @@
 --- Makefile.orig	Wed Apr  6 05:54:30 2005
-+++ Makefile	Mon Dec  5 08:31:05 2005
++++ Makefile	Fri Dec  9 07:41:26 2005
 @@ -1,18 +1,15 @@
 -FLTK = ../fltk
 -PDF = ../PDFlib-Lite-6.0.1/libs/pdflib
@@ -7,7 +7,7 @@
  CXX = g++
  
 -CFLAGS  = -Dunix  -U__APPLE__  -c $(OPT) -I$(FLTK) -I$(PDF) -I$(X11)/include 
-+CFLAGS  = -Dunix -c $(OPT) -I$(X11BASE)/include -I$(LOCALBASE)/include
++CFLAGS+= -Dunix -c $(OPT) -I$(X11BASE)/include -I$(LOCALBASE)/include
  
  
  OBJECTS = seaview.o pdf.o custom.o use_mase_files.o regions.o load_seq.o align.o xfmatpt.o comlines.o chooser_plus.o resource.o nexus.o old_file_chooser.o
diff --git a/biology/seaview/files/patch-align.cxx b/biology/seaview/files/patch-align.cxx
deleted file mode 100644
index 0db64c2..0000000
--- a/biology/seaview/files/patch-align.cxx
+++ /dev/null
@@ -1,19 +0,0 @@
---- align.cxx.orig	Mon Nov 17 14:15:01 2003
-+++ align.cxx	Mon Nov 17 14:15:26 2003
-@@ -1,6 +1,7 @@
- #include "seaview.h"
- #include <stdlib.h>
- #include <ctype.h>
-+#include <unistd.h>
- #ifndef WIN32
- #include <FL/x.H>
- #endif
-@@ -155,7 +156,7 @@
- #endif
- debut = view->active_region->list->debut;
- fin = view->active_region->list->fin;
--tmpnam(base_fname);
-+mkstemp(base_fname);
- /* 
- convertir en minuscules car clustalw n'accepte pas les majuscules ds filenames
- */
diff --git a/biology/seaview/files/patch-seaview.cxx b/biology/seaview/files/patch-seaview.cxx
deleted file mode 100644
index e437fa5..0000000
--- a/biology/seaview/files/patch-seaview.cxx
+++ /dev/null
@@ -1,11 +0,0 @@
---- seaview.cxx.orig	Mon Nov 17 14:16:39 2003
-+++ seaview.cxx	Mon Nov 17 14:17:13 2003
-@@ -164,6 +164,8 @@
- 	"seaview.hlp", 
- #elif defined(__APPLE__)
- 	NULL,
-+#elif defined(DEFAULT_HELPFILE)
-+       __XSTRING(DEFAULT_HELPFILE),
- #else
- 	"seaview.help", 
- #endif