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authorwjv <wjv@FreeBSD.org>2001-08-29 12:00:08 +0000
committerwjv <wjv@FreeBSD.org>2001-08-29 12:00:08 +0000
commit3278be211175ac1409913f1f71cf5e5fd7dccf9b (patch)
treea42cdf612172a954bbdf9a9eb20d7a8fcfb73e92 /biology/paml
parentc327ce0d986edf99e1fa6cf7e6157a62a53c71c3 (diff)
downloadFreeBSD-ports-3278be211175ac1409913f1f71cf5e5fd7dccf9b.zip
FreeBSD-ports-3278be211175ac1409913f1f71cf5e5fd7dccf9b.tar.gz
- Update to version 3.1
PR: 30176 Submitted by: David A. Bader <dbader@eece.unm.edu> (MAINTAINER)
Diffstat (limited to 'biology/paml')
-rw-r--r--biology/paml/Makefile8
-rw-r--r--biology/paml/distinfo2
-rw-r--r--biology/paml/files/patch-src::Makefile12
-rw-r--r--biology/paml/pkg-plist2
4 files changed, 18 insertions, 6 deletions
diff --git a/biology/paml/Makefile b/biology/paml/Makefile
index 045e789..93d99e8 100644
--- a/biology/paml/Makefile
+++ b/biology/paml/Makefile
@@ -6,10 +6,10 @@
#
PORTNAME= paml
-PORTVERSION= 3.04
+PORTVERSION= 3.1
CATEGORIES= biology
MASTER_SITES= ftp://abacus.gene.ucl.ac.uk/pub/paml/
-DISTNAME= paml3.0d
+DISTNAME= paml3.1
EXTRACT_SUFX= .tar.Z
MAINTAINER= dbader@eece.unm.edu
@@ -24,9 +24,9 @@ do-install:
${INSTALL_PROGRAM} ${WRKSRC}/${f} ${PREFIX}/bin
.endfor
.if !defined(NOPORTDOCS)
- ${MKDIR} ${PREFIX}/share/doc/${PORTNAME}
+ ${MKDIR} ${DOCSDIR}
${INSTALL_DATA} ${WRKDIR}/${DISTNAME}/doc/pamlDOC.pdf \
- ${PREFIX}/share/doc/${PORTNAME}
+ ${DOCSDIR}
.endif
.include <bsd.port.mk>
diff --git a/biology/paml/distinfo b/biology/paml/distinfo
index f944399..1edfbcf 100644
--- a/biology/paml/distinfo
+++ b/biology/paml/distinfo
@@ -1 +1 @@
-MD5 (paml3.0d.tar.Z) = a4c7b9d6dc2137ff080b5da816412936
+MD5 (paml3.1.tar.Z) = dbf2b5a61a373518e5d27b837aec9df7
diff --git a/biology/paml/files/patch-src::Makefile b/biology/paml/files/patch-src::Makefile
new file mode 100644
index 0000000..9c24749
--- /dev/null
+++ b/biology/paml/files/patch-src::Makefile
@@ -0,0 +1,12 @@
+--- Makefile.orig Thu Jul 19 12:01:33 2001
++++ Makefile Tue Aug 28 19:07:55 2001
+@@ -1,7 +1,7 @@
+ PRGS = baseml codeml codemlsites basemlg pamp evolver mcmctree yn00 chi2
+-CC = cc # cc, gcc, cl
++CC = gcc # cc, gcc, cl
+
+-CFLAGS = -fast -w
++CFLAGS = -O2
+
+ #CFLAGS = -w0 -warnprotos -newc -std -fast
+ #CFLAGS = -g -w0 -warnprotos -newc -std -edit1 #
diff --git a/biology/paml/pkg-plist b/biology/paml/pkg-plist
index d4ee4fc..17ee1e6 100644
--- a/biology/paml/pkg-plist
+++ b/biology/paml/pkg-plist
@@ -1,6 +1,6 @@
bin/baseml
bin/basemlg
-bin/chi2
+bin/chi2
bin/codeml
bin/codemlsites
bin/evolver
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