diff options
| author | linimon <linimon@FreeBSD.org> | 2004-07-01 06:24:01 +0000 |
|---|---|---|
| committer | linimon <linimon@FreeBSD.org> | 2004-07-01 06:24:01 +0000 |
| commit | fd62a4639f0d51d9ab2d2443f7175d013430a4d8 (patch) | |
| tree | f679b48909f4863e50e2067a8950591c6267b52a /biology/fasta | |
| parent | a2677a97a5f7ee1db4d14cfa52ac72bd28720d56 (diff) | |
| download | FreeBSD-ports-fd62a4639f0d51d9ab2d2443f7175d013430a4d8.zip FreeBSD-ports-fd62a4639f0d51d9ab2d2443f7175d013430a4d8.tar.gz | |
Update to fix fetch. Rework PORTVERSION to be more like biology/fasta3
and pacify portlint.
PR: ports/67428
Submitted by: Roman Neuhauser <neuhauser at chello dot cz>
Approved by: maintainer timeout (one month)
Diffstat (limited to 'biology/fasta')
| -rw-r--r-- | biology/fasta/Makefile | 7 | ||||
| -rw-r--r-- | biology/fasta/distinfo | 4 | ||||
| -rw-r--r-- | biology/fasta/files/patch-Makefile | 7 | ||||
| -rw-r--r-- | biology/fasta/pkg-plist | 2 |
4 files changed, 11 insertions, 9 deletions
diff --git a/biology/fasta/Makefile b/biology/fasta/Makefile index 839caa2..b33cd48 100644 --- a/biology/fasta/Makefile +++ b/biology/fasta/Makefile @@ -6,7 +6,7 @@ # PORTNAME= fasta -PORTVERSION= 20.u66 +PORTVERSION= 21.u1.d0 CATEGORIES= biology MASTER_SITES= http://ftp.virginia.edu/pub/fasta/ DISTNAME= fasta${PORTVERSION:S/.//g} @@ -18,7 +18,6 @@ COMMENT= A collection of programs for searching DNA and protein databases NO_CDROM= May not be sold or incorporated into a commercial product WRKSRC= ${WRKDIR}/fasta PKGMESSAGE= ${WRKDIR}/pkg-message -FASTA_DOCDIR= ${PREFIX}/share/doc/fasta FASTA_DOCS= COPYRIGHT README.versions fasta20.doc fasta20.me format.doc \ readme.* @@ -39,9 +38,9 @@ post-install: @ ${INSTALL_MAN} ${WRKSRC}/${manpage} ${MAN1PREFIX}/man/man1/ .endfor .if !defined(NOPORTDOCS) - @ ${MKDIR} ${FASTA_DOCDIR} + @ ${MKDIR} ${DOCSDIR} .for docfile in ${FASTA_DOCS} - @ ${INSTALL_DATA} ${WRKSRC}/${docfile} ${FASTA_DOCDIR} + @ ${INSTALL_DATA} ${WRKSRC}/${docfile} ${DOCSDIR} .endfor .endif diff --git a/biology/fasta/distinfo b/biology/fasta/distinfo index 713d62c..f31c663 100644 --- a/biology/fasta/distinfo +++ b/biology/fasta/distinfo @@ -1,2 +1,2 @@ -MD5 (fasta20u66.shar.Z) = 3960df040e5006969cf02568544751e9 -SIZE (fasta20u66.shar.Z) = 425608 +MD5 (fasta21u1d0.shar.Z) = df423465929b2f8ceaf508dceffa3403 +SIZE (fasta21u1d0.shar.Z) = 463293 diff --git a/biology/fasta/files/patch-Makefile b/biology/fasta/files/patch-Makefile index 2526248..39c4b51 100644 --- a/biology/fasta/files/patch-Makefile +++ b/biology/fasta/files/patch-Makefile @@ -1,15 +1,16 @@ --- Makefile.orig Mon Jan 29 15:10:42 2001 +++ Makefile Mon Jan 29 15:15:08 2001 -@@ -3,13 +3,13 @@ +@@ -3,14 +3,14 @@ # for mips, also use: -mips2 -O2 # -CC= cc -O +#CC= cc -O #CC=cc -g + #CC=insure -g --CFLAGS= -DUNIX -DBIGMEM -DSFCHAR="':'" -DEXPM1 -DPROGRESS -+CFLAGS+= -DUNIX -DBIGMEM -DSFCHAR="':'" -DEXPM1 -DPROGRESS +-CFLAGS= -DUNIX -DBIGMEM -DSFCHAR="':'" -DEXPM1 -DPROGRESS -DGAP_OPEN ++CFLAGS+= -DUNIX -DBIGMEM -DSFCHAR="':'" -DEXPM1 -DPROGRESS -DGAP_OPEN LFLAGS= -lm -o -BIN = /seqprg/slib/bin diff --git a/biology/fasta/pkg-plist b/biology/fasta/pkg-plist index 9f36d21..b92aa3b 100644 --- a/biology/fasta/pkg-plist +++ b/biology/fasta/pkg-plist @@ -10,6 +10,7 @@ %%PORTDOCS%%%%DOCSDIR%%/readme.v20u4 %%PORTDOCS%%%%DOCSDIR%%/readme.v20u5 %%PORTDOCS%%%%DOCSDIR%%/readme.v20u6 +%%PORTDOCS%%%%DOCSDIR%%/readme.v21u0 bin/aacomp bin/align bin/align0 @@ -30,6 +31,7 @@ bin/prss bin/psgrease bin/randseq bin/relate +bin/revcomp bin/ssearch bin/tfasta bin/tfastx |
