blob: 2bbf58df8333e89790b687d546d543753dd071fb (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
|
libdata/pkgconfig/libsbml.pc
include/sbml/Compartment.h
include/sbml/CompartmentType.h
include/sbml/Constraint.h
include/sbml/Delay.h
include/sbml/Event.h
include/sbml/EventAssignment.h
include/sbml/FunctionDefinition.h
include/sbml/InitialAssignment.h
include/sbml/KineticLaw.h
include/sbml/ListOf.h
include/sbml/LocalParameter.h
include/sbml/Model.h
include/sbml/Parameter.h
include/sbml/Priority.h
include/sbml/Reaction.h
include/sbml/Rule.h
include/sbml/SBMLDocument.h
include/sbml/SBMLError.h
include/sbml/SBMLErrorLog.h
include/sbml/SBMLErrorTable.h
include/sbml/SBMLNamespaces.h
include/sbml/SBMLReader.h
include/sbml/SBMLTransforms.h
include/sbml/SBMLTypeCodes.h
include/sbml/SBMLTypes.h
include/sbml/SBMLVisitor.h
include/sbml/SBMLWriter.h
include/sbml/SBO.h
include/sbml/SBase.h
include/sbml/Species.h
include/sbml/SpeciesReference.h
include/sbml/SpeciesType.h
include/sbml/StoichiometryMath.h
include/sbml/SyntaxChecker.h
include/sbml/Trigger.h
include/sbml/Unit.h
include/sbml/UnitDefinition.h
include/sbml/UnitKind.h
include/sbml/annotation/CVTerm.h
include/sbml/annotation/ModelHistory.h
include/sbml/annotation/RDFAnnotation.h
include/sbml/common/common.h
include/sbml/common/extern.h
include/sbml/common/libsbml-config-unix.h
include/sbml/common/libsbml-config-win.h
include/sbml/common/libsbml-config.h
include/sbml/common/libsbml-namespace.h
include/sbml/common/libsbml-version.h
include/sbml/common/operationReturnValues.h
include/sbml/common/sbmlfwd.h
include/sbml/compress/CompressCommon.h
include/sbml/compress/InputDecompressor.h
include/sbml/compress/OutputCompressor.h
include/sbml/compress/bzfstream.h
include/sbml/compress/crypt.h
include/sbml/compress/ioapi.h
include/sbml/compress/iowin32.h
include/sbml/compress/unzip.h
include/sbml/compress/zfstream.h
include/sbml/compress/zip.h
include/sbml/compress/zipfstream.h
include/sbml/math/ASTNode.h
include/sbml/math/FormulaFormatter.h
include/sbml/math/FormulaParser.h
include/sbml/math/FormulaTokenizer.h
include/sbml/math/MathML.h
include/sbml/units/FormulaUnitsData.h
include/sbml/units/UnitFormulaFormatter.h
include/sbml/units/UnitKindList.h
include/sbml/util/List.h
include/sbml/util/Stack.h
include/sbml/util/StringBuffer.h
include/sbml/util/memory.h
include/sbml/util/util.h
include/sbml/validator/ConsistencyValidator.h
include/sbml/validator/ConstraintMacros.h
include/sbml/validator/IdentifierConsistencyValidator.h
include/sbml/validator/InternalConsistencyValidator.h
include/sbml/validator/L1CompatibilityValidator.h
include/sbml/validator/L2v1CompatibilityValidator.h
include/sbml/validator/L2v2CompatibilityValidator.h
include/sbml/validator/L2v3CompatibilityValidator.h
include/sbml/validator/L2v4CompatibilityValidator.h
include/sbml/validator/L3v1CompatibilityValidator.h
include/sbml/validator/MathMLConsistencyValidator.h
include/sbml/validator/ModelingPracticeValidator.h
include/sbml/validator/OverdeterminedValidator.h
include/sbml/validator/SBOConsistencyValidator.h
include/sbml/validator/UnitConsistencyValidator.h
include/sbml/validator/VConstraint.h
include/sbml/validator/Validator.h
include/sbml/validator/constraints/IdBase.h
include/sbml/validator/constraints/IdList.h
include/sbml/validator/constraints/MathMLBase.h
include/sbml/validator/constraints/OverDeterminedCheck.h
include/sbml/validator/constraints/UniqueIdBase.h
include/sbml/validator/constraints/UniqueMetaId.h
include/sbml/validator/constraints/UnitsBase.h
include/sbml/xml/LibXMLAttributes.h
include/sbml/xml/LibXMLHandler.h
include/sbml/xml/LibXMLNamespaces.h
include/sbml/xml/LibXMLParser.h
include/sbml/xml/LibXMLTranscode.h
include/sbml/xml/XMLAttributes.h
include/sbml/xml/XMLBuffer.h
include/sbml/xml/XMLError.h
include/sbml/xml/XMLErrorLog.h
include/sbml/xml/XMLExtern.h
include/sbml/xml/XMLFileBuffer.h
include/sbml/xml/XMLHandler.h
include/sbml/xml/XMLInputStream.h
include/sbml/xml/XMLMemoryBuffer.h
include/sbml/xml/XMLNamespaces.h
include/sbml/xml/XMLNode.h
include/sbml/xml/XMLOutputStream.h
include/sbml/xml/XMLParser.h
include/sbml/xml/XMLToken.h
include/sbml/xml/XMLTokenizer.h
include/sbml/xml/XMLTriple.h
lib/libsbml.so.6
lib/libsbml.so
lib/libsbml.la
lib/libsbml.a
@dirrm include/sbml/annotation
@dirrm include/sbml/common
@dirrm include/sbml/compress
@dirrm include/sbml/math
@dirrm include/sbml/units
@dirrm include/sbml/util
@dirrm include/sbml/validator/constraints
@dirrm include/sbml/validator
@dirrm include/sbml/xml
@dirrm include/sbml/
%%WITH_PYTHON%%%%PYTHON_SITELIBDIR%%/libsbml/_libsbml.so
%%WITH_PYTHON%%%%PYTHON_SITELIBDIR%%/libsbml/libsbml.py
%%WITH_PYTHON%%%%PYTHON_SITELIBDIR%%/libsbml/libsbml.pyc
%%WITH_PYTHON%%%%PYTHON_SITELIBDIR%%/libsbml.pth
%%WITH_PYTHON%%%%PYTHON_SITELIBDIR%%/%%SBML_EGGINFO%%
%%WITH_PYTHON%%@dirrm %%PYTHON_SITELIBDIR%%/libsbml
%%WITH_RUBY%%%%RUBY_SITEARCHLIBDIR%%/libSBML.so
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/README.txt
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/FormulaGraphvizFormatter.h
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/Makefile
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/Makefile.in
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/convertSBML.c
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/drawMath.c
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/echoSBML.c
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/evaluateMath.c
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/printMath.c
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/printSBML.c
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/readSBML.c
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/translateMath.c
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/util.c
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/util.h
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c/validateSBML.c
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/Makefile
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/Makefile.in
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/addCVTerms.cpp
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/addingEvidenceCodes_1.cpp
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/addingEvidenceCodes_2.cpp
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/addModelHistory.cpp
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/appendAnnotation.cpp
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/convertSBML.cpp
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/createExampleSBML.cpp
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/echoSBML.cpp
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/printAnnotation.cpp
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/printMath.cpp
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/printNotes.cpp
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/printSBML.cpp
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/printUnits.cpp
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/readSBML.cpp
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/translateMath.cpp
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/unsetAnnotation.cpp
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/unsetNotes.cpp
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/util.c
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/util.h
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/c++/validateSBML.cpp
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/csharp/Makefile
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/csharp/Makefile.in
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/csharp/echoSBML.cs
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/csharp/validateSBML.cs
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/Makefile
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/Makefile.in
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/README.txt
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/addCVTerms.java
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/addModelHistory.java
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/appendAnnotation.java
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/convertSBML.java
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/echoSBML.java
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/evaluateMath.java
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/printAnnotation.java
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/printMath.java
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/printNotes.java
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/printSBML.java
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/printUnits.java
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/readSBML.java
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/translateMath.java
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/unsetAnnotation.java
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/unsetNotes.java
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/java/validateSBML.java
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/layout/Makefile.in
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/layout/example1.cpp
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/layout/example1.java
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/layout/example1.py
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/layout/example2.cpp
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/layout/example3.cpp
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/layout/layout2svg.xsl
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/perl/convertSBML.pl
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/perl/evaluateMath.pl
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/perl/extractReactionInfo.pl
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/perl/extractReactions.pl
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/perl/printMath.pl
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/perl/printSBML.pl
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/perl/readSBML.pl
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/perl/translateMath.pl
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/perl/validateSBML.pl
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/python/echoSBML.py
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/python/validateSBML.py
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ruby/convertSBML.rb
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ruby/echoSBML.rb
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ruby/printMath.rb
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/ruby/validateSBML.rb
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/README.txt
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-2/README.txt
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-2/algebraicrules.xml
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-2/assignmentrules.xml
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-2/boundarycondition.xml
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-2/delay.xml
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-2/dimerization.xml
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-2/enzymekinetics.xml
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-2/events.xml
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-2/functiondef.xml
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-2/multicomp.xml
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-2/overdetermined.xml
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-2/twodimensional.xml
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-2/units.xml
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-3/algebraicrules.xml
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-3/assignmentrules.xml
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-3/boundarycondition.xml
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-3/conversionfactor1.xml
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-3/conversionfactor2.xml
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-3/delay.xml
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-3/dimerization.xml
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-3/enzymekinetics.xml
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-3/events.xml
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-3/fullydeterminedevent.xml
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-3/functiondef.xml
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-3/membrane.xml
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-3/multicomp.xml
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-3/overdetermined.xml
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-3/README.txt
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-3/twoalgebraicrules.xml
%%PORTEXAMPLES%%%%EXAMPLESDIR%%/sample-models/from-spec/level-3/twodimensional.xml
%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/c
%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/c++
%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/csharp
%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/java
%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/layout
%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/perl
%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/python
%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/ruby
%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/sample-models/from-spec/level-3
%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/sample-models/from-spec/level-2
%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/sample-models/from-spec
%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%/sample-models
%%PORTEXAMPLES%%@dirrm %%EXAMPLESDIR%%
|
