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--- interface.c.orig Thu Feb 13 15:17:33 2003
+++ interface.c Thu Feb 13 15:26:28 2003
@@ -1132,7 +1132,7 @@
/* added for File System Standards - Francois */
path1=(char *)ckalloc((strlen(path)+64)*sizeof(char));
strcpy(path1,path);
- strcat(path1,"/usr/share/clustalx:/usr/local/share/clustalx");
+ strcat(path1,DATADIR);
lf=(sint)strlen(fname);
deb=path1;
@@ -1224,7 +1224,7 @@
if(strstr(temp, help_marker)){
if(usemenu) {
fprintf(stdout,"\n");
- getstr("Press [RETURN] to continue",lin2);
+ getstr("Press [RETURN] to continue",lin2,MAXLINE);
}
fclose(help_file);
return;
@@ -1236,7 +1236,7 @@
if(usemenu) {
if(nlines >= PAGE_LEN) {
fprintf(stdout,"\n");
- getstr("Press [RETURN] to continue or X to stop",lin2);
+ getstr("Press [RETURN] to continue or X to stop",lin2,MAXLINE);
if(toupper(*lin2) == 'X') {
fclose(help_file);
return;
@@ -1248,7 +1248,7 @@
}
if(usemenu) {
fprintf(stdout,"\n");
- getstr("Press [RETURN] to continue",lin2);
+ getstr("Press [RETURN] to continue",lin2,MAXLINE);
}
fclose(help_file);
}
@@ -1287,7 +1287,7 @@
++nlines;
if(nlines >= PAGE_LEN) {
fprintf(stdout,"\n");
- getstr("Press [RETURN] to continue or X to stop",lin2);
+ getstr("Press [RETURN] to continue or X to stop",lin2,MAXLINE);
if(toupper(*lin2) == 'X') {
fclose(file);
return;
@@ -1298,7 +1298,7 @@
}
fclose(file);
fprintf(stdout,"\n");
- getstr("Press [RETURN] to continue",lin2);
+ getstr("Press [RETURN] to continue",lin2,MAXLINE);
}
@@ -1747,7 +1747,7 @@
FILE *infile;
if(usemenu)
- getstr("Enter name of the matrix file",lin2);
+ getstr("Enter name of the matrix file",lin2,MAXLINE);
else
strcpy(lin2,str);
@@ -1773,7 +1773,7 @@
FILE *infile;
if(usemenu)
- getstr("Enter name of the matrix file",lin2);
+ getstr("Enter name of the matrix file",lin2,MAXLINE);
else
strcpy(lin2,str);
@@ -2176,7 +2176,7 @@
strcpy(local_prompt,"\n\nEnter new name to avoid overwriting ");
strcat(local_prompt," [%s]: ");
fprintf(stdout,local_prompt,file_name);
- gets(temp);
+ fgets(temp,FILENAMELEN+1,stdin);
if(*temp != EOS) strcpy(file_name,temp);
}
}
@@ -2184,7 +2184,7 @@
strcpy(local_prompt,prompt);
strcat(local_prompt," [%s]: ");
fprintf(stdout,local_prompt,file_name);
- gets(temp);
+ fgets(temp,FILENAMELEN+1,stdin);
if(*temp != EOS) strcpy(file_name,temp);
}
@@ -2385,7 +2385,7 @@
if (usemenu)
fprintf(stdout,"\nUse the existing GUIDE TREE file, %s (y/n) ? [y]: ",
tree_name);
- gets(temp);
+ fgets(temp,MAXLINE,stdin);
if(*temp != 'n' && *temp != 'N') {
strcpy(phylip_name,tree_name);
use_tree = TRUE;
@@ -2617,7 +2617,7 @@
fprintf(stdout,"\nEnter a name for the guide tree file [%s]: ",
phylip_name);
- gets(temp);
+ fgets(temp,MAXLINE,stdin);
if(*temp != EOS)
strcpy(phylip_name,temp);
}
@@ -2719,7 +2719,7 @@
#endif
fprintf(stdout,"\nUse the existing GUIDE TREE file for Profile 1, %s (y/n) ? [y]: ",
tree_name);
- gets(temp);
+ fgets(temp,MAXLINE,stdin);
if(*temp != 'n' && *temp != 'N') {
strcpy(p1_tree_name,tree_name);
use_tree1 = TRUE;
@@ -2745,7 +2745,7 @@
#endif
fprintf(stdout,"\nUse the existing GUIDE TREE file for Profile 2, %s (y/n) ? [y]: ",
tree_name);
- gets(temp);
+ fgets(temp,MAXLINE,stdin);
if(*temp != 'n' && *temp != 'N') {
strcpy(p2_tree_name,tree_name);
use_tree2 = TRUE;
@@ -4203,7 +4203,7 @@
if(usemenu) {
fprintf(stdout,"\nEnter a name for the parameter output file [%s]: ",
parname);
- gets(temp);
+ fgets(temp,FILENAMELEN+1,stdin);
if(*temp != EOS)
strcpy(parname,temp);
}
|
