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bin/annotateBed
bin/bamToBed
bin/bamToFastq
bin/bed12ToBed6
bin/bedToBam
bin/bedToIgv
bin/bedpeToBam
bin/bedtools
bin/closestBed
bin/clusterBed
bin/complementBed
bin/coverageBed
bin/expandCols
bin/fastaFromBed
bin/flankBed
bin/genomeCoverageBed
bin/getOverlap
bin/groupBy
bin/intersectBed
bin/linksBed
bin/mapBed
bin/maskFastaFromBed
bin/mergeBed
bin/multiBamCov
bin/multiIntersectBed
bin/nucBed
bin/pairToBed
bin/pairToPair
bin/randomBed
bin/shuffleBed
bin/slopBed
bin/sortBed
bin/subtractBed
bin/tagBam
bin/unionBedGraphs
bin/windowBed
bin/windowMaker
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