bin/GMXRC
bin/GMXRC.bash
bin/GMXRC.csh
bin/GMXRC.zsh
bin/anadock
bin/average
bin/cdist
bin/completion.bash
bin/completion.csh
bin/completion.zsh
bin/disco
bin/do_dssp
bin/editconf
bin/eneconv
bin/ffscan
bin/g_anaeig
bin/g_analyze
bin/g_angle
bin/g_bond
bin/g_bundle
bin/g_chi
bin/g_cluster
bin/g_clustsize
bin/g_confrms
bin/g_covar
bin/g_density
bin/g_dielectric
bin/g_dih
bin/g_dipoles
bin/g_disre
bin/g_dist
bin/g_dyndom
bin/g_enemat
bin/g_energy
bin/g_filter
bin/g_gyrate
bin/g_h2order
bin/g_hbond
bin/g_helix
bin/g_lie
bin/g_mdmat
bin/g_mindist
bin/g_morph
bin/g_msd
bin/g_nmeig
bin/g_nmens
bin/g_order
bin/g_potential
bin/g_rama
bin/g_rdf
bin/g_rms
bin/g_rmsdist
bin/g_rmsf
bin/g_rotacf
bin/g_saltbr
bin/g_sas
bin/g_sgangle
bin/g_sorient
bin/g_tcaf
bin/g_traj
bin/g_velacc
bin/g_wham
bin/genbox
bin/genconf
bin/genion
bin/genpr
bin/gmxcheck
bin/gmxdump
bin/grompp
%%WITHOUT_X%%bin/highway
bin/luck
bin/make_edi
bin/make_ndx
bin/mdrun
bin/mk_angndx
%%WITHOUT_X%%bin/ngmx
bin/pdb2gmx
bin/protonate
bin/tpbconv
bin/trjcat
bin/trjconv
bin/trjorder
bin/wheel
bin/x2top
bin/xpm2ps
%%WITHOUT_X%%bin/xrama
include/gromacs/3dview.h
include/gromacs/assert.h
include/gromacs/atomprop.h
include/gromacs/axp_asm.h
include/gromacs/block_tx.h
include/gromacs/bondf.h
include/gromacs/calcgrid.h
include/gromacs/calch.h
include/gromacs/calcmu.h
include/gromacs/callf77.h
include/gromacs/confio.h
include/gromacs/constr.h
include/gromacs/copyrite.h
include/gromacs/detectcpu.h
include/gromacs/dihre.h
include/gromacs/disre.h
include/gromacs/do_fit.h
include/gromacs/do_md.h
include/gromacs/dummies.h
include/gromacs/ebin.h
include/gromacs/edsam.h
include/gromacs/enxio.h
include/gromacs/ewald.h
include/gromacs/ewald_util.h
include/gromacs/fatal.h
include/gromacs/ffscanf.h
include/gromacs/fftgrid.h
include/gromacs/fftw_wrapper.h
include/gromacs/filenm.h
include/gromacs/force.h
include/gromacs/futil.h
include/gromacs/gbutil.h
include/gromacs/gmx_ana.h
include/gromacs/gmx_random.h
include/gromacs/gmx_system_xdr.h
include/gromacs/gmxcomplex.h
include/gromacs/gmxfio.h
include/gromacs/grompp.h
include/gromacs/gstat.h
include/gromacs/index.h
include/gromacs/init.h
include/gromacs/invblock.h
include/gromacs/macros.h
include/gromacs/magic.h
include/gromacs/main.h
include/gromacs/maths.h
include/gromacs/matio.h
include/gromacs/mdatoms.h
include/gromacs/mdebin.h
include/gromacs/mdrun.h
include/gromacs/metacode.h
include/gromacs/mshift.h
include/gromacs/mvdata.h
include/gromacs/names.h
include/gromacs/network.h
include/gromacs/nr.h
include/gromacs/nrama.h
include/gromacs/nrjac.h
include/gromacs/nrnb.h
include/gromacs/ns.h
include/gromacs/nsb.h
include/gromacs/nsgrid.h
include/gromacs/orires.h
include/gromacs/pbc.h
include/gromacs/pdbio.h
include/gromacs/pdebug.h
include/gromacs/physics.h
include/gromacs/pme.h
include/gromacs/ppc_altivec.h
include/gromacs/pppm.h
include/gromacs/princ.h
include/gromacs/pull.h
include/gromacs/random.h
include/gromacs/rbin.h
include/gromacs/rdgroup.h
include/gromacs/readcomp.h
include/gromacs/readinp.h
include/gromacs/reorder.h
include/gromacs/rmpbc.h
include/gromacs/sheader.h
include/gromacs/shift.h
include/gromacs/shift_util.h
include/gromacs/smalloc.h
include/gromacs/sortwater.h
include/gromacs/split.h
include/gromacs/statusio.h
include/gromacs/statutil.h
include/gromacs/strdb.h
include/gromacs/string2.h
include/gromacs/struc2.h
include/gromacs/symtab.h
include/gromacs/sysstuff.h
include/gromacs/tags.h
include/gromacs/tgroup.h
include/gromacs/tpxio.h
include/gromacs/transfer.h
include/gromacs/trnio.h
include/gromacs/txtdump.h
include/gromacs/typedefs.h
include/gromacs/types/atoms.h
include/gromacs/types/block.h
include/gromacs/types/commrec.h
include/gromacs/types/edsams.h
include/gromacs/types/energy.h
include/gromacs/types/enums.h
include/gromacs/types/fcdata.h
include/gromacs/types/filenm.h
include/gromacs/types/forcerec.h
include/gromacs/types/graph.h
include/gromacs/types/group.h
include/gromacs/types/idef.h
include/gromacs/types/ifunc.h
include/gromacs/types/inputrec.h
include/gromacs/types/ishift.h
include/gromacs/types/matrix.h
include/gromacs/types/mdatom.h
include/gromacs/types/nblist.h
include/gromacs/types/nbslist.h
include/gromacs/types/nrnb.h
include/gromacs/types/nsborder.h
include/gromacs/types/nsgrid.h
include/gromacs/types/parm.h
include/gromacs/types/simple.h
include/gromacs/types/state.h
include/gromacs/types/symtab.h
include/gromacs/types/topology.h
include/gromacs/types/trx.h
include/gromacs/update.h
include/gromacs/utils.h
include/gromacs/vcm.h
include/gromacs/vec.h
include/gromacs/viewit.h
include/gromacs/wgms.h
include/gromacs/wman.h
include/gromacs/writeps.h
include/gromacs/x86_3dnow.h
include/gromacs/x86_sse.h
include/gromacs/x86_sse2.h
include/gromacs/xdrf.h
include/gromacs/xtcio.h
include/gromacs/xvgr.h
lib/libgmx%%SUFFIX_MPI%%%%SUFFIX_D%%.a
lib/libgmx%%SUFFIX_MPI%%%%SUFFIX_D%%.so
lib/libgmx%%SUFFIX_MPI%%%%SUFFIX_D%%.so.3
lib/libgmxana%%SUFFIX_D%%.a
lib/libgmxana%%SUFFIX_D%%.so
%%WITHOUT_MPI%%lib/libgmxana%%SUFFIX_D%%.so.3
%%WITH_MPI%%lib/libgmxana%%SUFFIX_MPI%%%%SUFFIX_D%%.a
%%WITH_MPI%%lib/libgmxana%%SUFFIX_MPI%%%%SUFFIX_D%%.so
%%WITH_MPI%%lib/libgmxana%%SUFFIX_MPI%%%%SUFFIX_D%%.so.3
lib/libmd%%SUFFIX_MPI%%%%SUFFIX_D%%.a
lib/libmd%%SUFFIX_MPI%%%%SUFFIX_D%%.so
lib/libmd%%SUFFIX_MPI%%%%SUFFIX_D%%.so.3
%%DATADIR%%/html/gmxfaq.html
%%DATADIR%%/html/images/1ctf-0.2.jpg
%%DATADIR%%/html/images/1ctf-0.5.jpg
%%DATADIR%%/html/images/1ctf-0.jpg
%%DATADIR%%/html/images/1ctf-1.jpg
%%DATADIR%%/html/images/1ctf-10.jpg
%%DATADIR%%/html/images/1ctf-4.jpg
%%DATADIR%%/html/images/articles.gif
%%DATADIR%%/html/images/bench.gif
%%DATADIR%%/html/images/charts_down.gif
%%DATADIR%%/html/images/charts_up.gif
%%DATADIR%%/html/images/faq.gif
%%DATADIR%%/html/images/features.gif
%%DATADIR%%/html/images/flow_down.gif
%%DATADIR%%/html/images/flow_downleft.gif
%%DATADIR%%/html/images/flow_hline.gif
%%DATADIR%%/html/images/flow_left.gif
%%DATADIR%%/html/images/flow_leftright.gif
%%DATADIR%%/html/images/flow_leftrightdown.gif
%%DATADIR%%/html/images/flow_leftrightup.gif
%%DATADIR%%/html/images/flow_leftup.gif
%%DATADIR%%/html/images/flow_right+left.gif
%%DATADIR%%/html/images/flow_right.gif
%%DATADIR%%/html/images/flow_rightleftdown.gif
%%DATADIR%%/html/images/flow_uprightleft.gif
%%DATADIR%%/html/images/flow_vline.gif
%%DATADIR%%/html/images/flow_vrule.gif
%%DATADIR%%/html/images/gmxlogo_small.jpg
%%DATADIR%%/html/images/links.gif
%%DATADIR%%/html/images/mail.gif
%%DATADIR%%/html/images/manual.gif
%%DATADIR%%/html/images/plotje.gif
%%DATADIR%%/html/images/software.gif
%%DATADIR%%/html/images/topologies.gif
%%DATADIR%%/html/images/xvgr.gif
%%DATADIR%%/html/online.html
%%DATADIR%%/html/online/dat.html
%%DATADIR%%/html/online/dlg.html
%%DATADIR%%/html/online/do_dssp.html
%%DATADIR%%/html/online/edi.html
%%DATADIR%%/html/online/editconf.html
%%DATADIR%%/html/online/edo.html
%%DATADIR%%/html/online/edr.html
%%DATADIR%%/html/online/ene.html
%%DATADIR%%/html/online/eneconv.html
%%DATADIR%%/html/online/eps.html
%%DATADIR%%/html/online/files.html
%%DATADIR%%/html/online/flow.html
%%DATADIR%%/html/online/g87.html
%%DATADIR%%/html/online/g96.html
%%DATADIR%%/html/online/g_anaeig.html
%%DATADIR%%/html/online/g_analyze.html
%%DATADIR%%/html/online/g_angle.html
%%DATADIR%%/html/online/g_bond.html
%%DATADIR%%/html/online/g_bundle.html
%%DATADIR%%/html/online/g_chi.html
%%DATADIR%%/html/online/g_cluster.html
%%DATADIR%%/html/online/g_confrms.html
%%DATADIR%%/html/online/g_covar.html
%%DATADIR%%/html/online/g_density.html
%%DATADIR%%/html/online/g_dielectric.html
%%DATADIR%%/html/online/g_dih.html
%%DATADIR%%/html/online/g_dipoles.html
%%DATADIR%%/html/online/g_disre.html
%%DATADIR%%/html/online/g_dist.html
%%DATADIR%%/html/online/g_dyndom.html
%%DATADIR%%/html/online/g_enemat.html
%%DATADIR%%/html/online/g_energy.html
%%DATADIR%%/html/online/g_gyrate.html
%%DATADIR%%/html/online/g_h2order.html
%%DATADIR%%/html/online/g_hbond.html
%%DATADIR%%/html/online/g_helix.html
%%DATADIR%%/html/online/g_lie.html
%%DATADIR%%/html/online/g_mdmat.html
%%DATADIR%%/html/online/g_mindist.html
%%DATADIR%%/html/online/g_morph.html
%%DATADIR%%/html/online/g_msd.html
%%DATADIR%%/html/online/g_nmeig.html
%%DATADIR%%/html/online/g_nmens.html
%%DATADIR%%/html/online/g_order.html
%%DATADIR%%/html/online/g_potential.html
%%DATADIR%%/html/online/g_rama.html
%%DATADIR%%/html/online/g_rdf.html
%%DATADIR%%/html/online/g_rms.html
%%DATADIR%%/html/online/g_rmsdist.html
%%DATADIR%%/html/online/g_rmsf.html
%%DATADIR%%/html/online/g_rotacf.html
%%DATADIR%%/html/online/g_saltbr.html
%%DATADIR%%/html/online/g_sas.html
%%DATADIR%%/html/online/g_sgangle.html
%%DATADIR%%/html/online/g_sorient.html
%%DATADIR%%/html/online/g_tcaf.html
%%DATADIR%%/html/online/g_traj.html
%%DATADIR%%/html/online/g_velacc.html
%%DATADIR%%/html/online/genbox.html
%%DATADIR%%/html/online/genconf.html
%%DATADIR%%/html/online/genion.html
%%DATADIR%%/html/online/genpr.html
%%DATADIR%%/html/online/getting_started.html
%%DATADIR%%/html/online/gmxcheck.html
%%DATADIR%%/html/online/gmxdemo.html
%%DATADIR%%/html/online/gmxdump.html
%%DATADIR%%/html/online/gro.html
%%DATADIR%%/html/online/grompp.html
%%DATADIR%%/html/online/hat.html
%%DATADIR%%/html/online/highway.html
%%DATADIR%%/html/online/include_bot.html
%%DATADIR%%/html/online/include_top.html
%%DATADIR%%/html/online/itp.html
%%DATADIR%%/html/online/log.html
%%DATADIR%%/html/online/m2p.html
%%DATADIR%%/html/online/make_ndx.html
%%DATADIR%%/html/online/map.html
%%DATADIR%%/html/online/mdp.html
%%DATADIR%%/html/online/mdp_opt.html
%%DATADIR%%/html/online/mdrun.html
%%DATADIR%%/html/online/methanol.html
%%DATADIR%%/html/online/mixed.html
%%DATADIR%%/html/online/mk_angndx.html
%%DATADIR%%/html/online/mtx.html
%%DATADIR%%/html/online/ndx.html
%%DATADIR%%/html/online/ngmx.html
%%DATADIR%%/html/online/options.html
%%DATADIR%%/html/online/out.html
%%DATADIR%%/html/online/pdb.html
%%DATADIR%%/html/online/pdb2gmx.html
%%DATADIR%%/html/online/protonate.html
%%DATADIR%%/html/online/protunf.html
%%DATADIR%%/html/online/rtp.html
%%DATADIR%%/html/online/speptide.html
%%DATADIR%%/html/online/style.css
%%DATADIR%%/html/online/tex.html
%%DATADIR%%/html/online/top.html
%%DATADIR%%/html/online/tpa.html
%%DATADIR%%/html/online/tpb.html
%%DATADIR%%/html/online/tpbconv.html
%%DATADIR%%/html/online/tpr.html
%%DATADIR%%/html/online/trj.html
%%DATADIR%%/html/online/trjcat.html
%%DATADIR%%/html/online/trjconv.html
%%DATADIR%%/html/online/trjorder.html
%%DATADIR%%/html/online/trr.html
%%DATADIR%%/html/online/water.html
%%DATADIR%%/html/online/wheel.html
%%DATADIR%%/html/online/x2top.html
%%DATADIR%%/html/online/xpm.html
%%DATADIR%%/html/online/xpm2ps.html
%%DATADIR%%/html/online/xrama.html
%%DATADIR%%/html/online/xtc.html
%%DATADIR%%/html/online/xvg.html
%%DATADIR%%/html/online/yourown.html
%%DATADIR%%/template/Makefile.%%BUILD%%%%SUFFIX_DOUBLE%%
%%DATADIR%%/template/README
%%DATADIR%%/template/template.c
%%DATADIR%%/top/1mlg.itp
%%DATADIR%%/top/2mlg.itp
%%DATADIR%%/top/FF.dat
%%DATADIR%%/top/aminoacids.dat
%%DATADIR%%/top/atom_nom.tbl
%%DATADIR%%/top/atommass.dat
%%DATADIR%%/top/benzamide.itp
%%DATADIR%%/top/bondadd.itp
%%DATADIR%%/top/bonds.dlg
%%DATADIR%%/top/bromacs.dat
%%DATADIR%%/top/buck.itp
%%DATADIR%%/top/ca-shift.dat
%%DATADIR%%/top/cb-shift.dat
%%DATADIR%%/top/co-shift.dat
%%DATADIR%%/top/dec50.gro
%%DATADIR%%/top/decane.itp
%%DATADIR%%/top/dgsolv.dat
%%DATADIR%%/top/dlg.itp
%%DATADIR%%/top/dmso.gro
%%DATADIR%%/top/dmso.itp
%%DATADIR%%/top/edissoc.dat
%%DATADIR%%/top/export.dlg
%%DATADIR%%/top/fa.itp
%%DATADIR%%/top/ffG43a1-c.tdb
%%DATADIR%%/top/ffG43a1-n.tdb
%%DATADIR%%/top/ffG43a1.atp
%%DATADIR%%/top/ffG43a1.ddb
%%DATADIR%%/top/ffG43a1.hdb
%%DATADIR%%/top/ffG43a1.itp
%%DATADIR%%/top/ffG43a1.rtp
%%DATADIR%%/top/ffG43a1bon.itp
%%DATADIR%%/top/ffG43a1nb.itp
%%DATADIR%%/top/ffG43a2-c.tdb
%%DATADIR%%/top/ffG43a2-n.tdb
%%DATADIR%%/top/ffG43a2.atp
%%DATADIR%%/top/ffG43a2.ddb
%%DATADIR%%/top/ffG43a2.hdb
%%DATADIR%%/top/ffG43a2.itp
%%DATADIR%%/top/ffG43a2.rtp
%%DATADIR%%/top/ffG43a2bon.itp
%%DATADIR%%/top/ffG43a2nb.itp
%%DATADIR%%/top/ffG43b1-c.tdb
%%DATADIR%%/top/ffG43b1-n.tdb
%%DATADIR%%/top/ffG43b1.atp
%%DATADIR%%/top/ffG43b1.ddb
%%DATADIR%%/top/ffG43b1.hdb
%%DATADIR%%/top/ffG43b1.itp
%%DATADIR%%/top/ffG43b1.rtp
%%DATADIR%%/top/ffG43b1bon.itp
%%DATADIR%%/top/ffG43b1nb.itp
%%DATADIR%%/top/ff_dum.itp
%%DATADIR%%/top/ffgmx-c.tdb
%%DATADIR%%/top/ffgmx-n.tdb
%%DATADIR%%/top/ffgmx.atp
%%DATADIR%%/top/ffgmx.ddb
%%DATADIR%%/top/ffgmx.hdb
%%DATADIR%%/top/ffgmx.itp
%%DATADIR%%/top/ffgmx.n2t
%%DATADIR%%/top/ffgmx.rtp
%%DATADIR%%/top/ffgmx2-c.tdb
%%DATADIR%%/top/ffgmx2-n.tdb
%%DATADIR%%/top/ffgmx2.atp
%%DATADIR%%/top/ffgmx2.ddb
%%DATADIR%%/top/ffgmx2.hdb
%%DATADIR%%/top/ffgmx2.itp
%%DATADIR%%/top/ffgmx2.rtp
%%DATADIR%%/top/ffgmx2bon.itp
%%DATADIR%%/top/ffgmx2nb.itp
%%DATADIR%%/top/ffgmxbon.itp
%%DATADIR%%/top/ffgmxnb.itp
%%DATADIR%%/top/ffoplsaa-c.tdb
%%DATADIR%%/top/ffoplsaa-n.tdb
%%DATADIR%%/top/ffoplsaa.atp
%%DATADIR%%/top/ffoplsaa.ddb
%%DATADIR%%/top/ffoplsaa.hdb
%%DATADIR%%/top/ffoplsaa.itp
%%DATADIR%%/top/ffoplsaa.rtp
%%DATADIR%%/top/ffoplsaabon.itp
%%DATADIR%%/top/ffoplsaanb.itp
%%DATADIR%%/top/flexspc.itp
%%DATADIR%%/top/flexspce.itp
%%DATADIR%%/top/flexwat-ferguson.itp
%%DATADIR%%/top/gromacs.dtd
%%DATADIR%%/top/gurgle.dat
%%DATADIR%%/top/h2p4o13.itp
%%DATADIR%%/top/h2p8o25.itp
%%DATADIR%%/top/h2po4.itp
%%DATADIR%%/top/ha-shift.dat
%%DATADIR%%/top/ions.itp
%%DATADIR%%/top/links.dat
%%DATADIR%%/top/methanol.itp
%%DATADIR%%/top/phbres.dat
%%DATADIR%%/top/ps.m2p
%%DATADIR%%/top/random.dat
%%DATADIR%%/top/refi_aa.dat
%%DATADIR%%/top/spc.itp
%%DATADIR%%/top/spc216.gro
%%DATADIR%%/top/spce.itp
%%DATADIR%%/top/specbond.dat
%%DATADIR%%/top/ss.map
%%DATADIR%%/top/surface.dat
%%DATADIR%%/top/sw.itp
%%DATADIR%%/top/table6-10.xvg
%%DATADIR%%/top/table6-11.xvg
%%DATADIR%%/top/table6-12.xvg
%%DATADIR%%/top/table6-8.xvg
%%DATADIR%%/top/table6-9.xvg
%%DATADIR%%/top/tfe.itp
%%DATADIR%%/top/tip3p.itp
%%DATADIR%%/top/tip4p.gro
%%DATADIR%%/top/tip4p.itp
%%DATADIR%%/top/tip5p.gro
%%DATADIR%%/top/tip5p.itp
%%DATADIR%%/top/urea+h2o.gro
%%DATADIR%%/top/urea.itp
%%DATADIR%%/top/vdwradii.dat
%%DATADIR%%/top/xlateat.dat
%%DATADIR%%/tutor/cleanit
%%DATADIR%%/tutor/gmxdemo/cpeptide.pdb
%%DATADIR%%/tutor/gmxdemo/demo
%%DATADIR%%/tutor/methanol/conf.gro
%%DATADIR%%/tutor/methanol/grompp.mdp
%%DATADIR%%/tutor/methanol/index.ndx
%%DATADIR%%/tutor/methanol/methanol.itp
%%DATADIR%%/tutor/methanol/methanol.pdb
%%DATADIR%%/tutor/methanol/topol.top
%%DATADIR%%/tutor/mixed/conf.gro
%%DATADIR%%/tutor/mixed/grompp.mdp
%%DATADIR%%/tutor/mixed/index.ndx
%%DATADIR%%/tutor/mixed/mixed.pdb
%%DATADIR%%/tutor/mixed/topol.top
%%DATADIR%%/tutor/nmr1/conf.gro
%%DATADIR%%/tutor/nmr1/grompp.mdp
%%DATADIR%%/tutor/nmr1/pep.pdb
%%DATADIR%%/tutor/nmr1/topol.top
%%DATADIR%%/tutor/nmr2/conf.gro
%%DATADIR%%/tutor/nmr2/genconf.gcp
%%DATADIR%%/tutor/nmr2/grompp.mdp
%%DATADIR%%/tutor/nmr2/pep.pdb
%%DATADIR%%/tutor/nmr2/topol.top
%%DATADIR%%/tutor/speptide/em.mdp
%%DATADIR%%/tutor/speptide/full.mdp
%%DATADIR%%/tutor/speptide/pr.mdp
%%DATADIR%%/tutor/speptide/speptide.pdb
%%DATADIR%%/tutor/water/conf.gro
%%DATADIR%%/tutor/water/grompp.mdp
%%DATADIR%%/tutor/water/index.ndx
%%DATADIR%%/tutor/water/spc216.pdb
%%DATADIR%%/tutor/water/topol.top
@dirrm %%DATADIR%%/tutor/water
@dirrm %%DATADIR%%/tutor/speptide
@dirrm %%DATADIR%%/tutor/nmr2
@dirrm %%DATADIR%%/tutor/nmr1
@dirrm %%DATADIR%%/tutor/mixed
@dirrm %%DATADIR%%/tutor/methanol
@dirrm %%DATADIR%%/tutor/gmxdemo
@dirrm %%DATADIR%%/tutor
@dirrm %%DATADIR%%/top
@dirrm %%DATADIR%%/template
@dirrm %%DATADIR%%/html/online
@dirrm %%DATADIR%%/html/images
@dirrm %%DATADIR%%/html
@dirrm %%DATADIR%%
@dirrm include/gromacs/types
@dirrm include/gromacs