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* GDL - GNU Data Language - is a free IDL (Interactive Data Language)thierry2005-10-311-0/+1
| | | | | | | | | | | compatible incremental compiler (i.e. runs IDL programs). IDL is a registered trademark of Research Systems Inc. (see: <http://www.rsinc.com/>) Remark: slave port for Python module intentionnally not yet committed. WWW: http://gnudatalanguage.sourceforge.net/
* Add gerris 0.6.0, a scientific CFD simulator.thierry2005-09-251-0/+1
| | | | | | | | | | | | Gerris is an Open Source Free Software library for the solution of partial differential equations describing fluid flow. Gerris is supported by NIWA (National Institute of Water and Atmospheric research) and by the Marsden Fund of the Royal Society of New Zealand. The code is written entirely in C and uses both the GLib Library and the GTS Library for geometrical functions and object-oriented programming. PR: 86297 Submitted by: Oliver Dunkl <odunkl (at) gmx.net>
* PAIDA is pure Python scientific analysis package and implements AIDA (Abstractpav2005-07-181-0/+1
| | | | | | | Interfaces for Data Analysis). PR: ports/83599 Submitted by: Vsevolod Stakhov <vsevolod@highsecure.ru>
* New port: ParaView is a powerful scientific visualization application, designedanholt2005-06-141-0/+1
| | | | with the need to visualize large data sets in mind.
* New port for mbdyn, which is a MultiBody Dynamics simulation software. It comespav2005-05-221-0/+1
| | | | | | | | | with lots of libraries etc. There are two knobs which are in development at the moment so I disabled them with an IGNORE message. They need some work and maybe some testing. PR: ports/81136 Submitted by: Kay Lehmann <kay_lehmann@web.de>
* Add lamprop 1.3.1.thierry2005-05-151-0/+1
| | | | | | | | | | Lamprop takes in input file describing the lay-up and constituent materials of a fiber-reinforced composite laminate, and calculates some mechanical and other properties. The submitter is the original author of the software, and will maintain the port. PR: 81066 Submitted by: Roland Smith <rsmith (at) xs4all.nl>
* Remove mxpkris2005-03-271-1/+0
| | | | | Forgotten by: maho Approved by: portmgr (self)
* Add mxp (Mandelbrot explorer). Mxp is an X application for computing and ↵maho2005-03-191-0/+1
| | | | | | | | | | | | | | | | | | exploring Mandelbrot sets. Features of mxp include: - zoom and un-zoom - dynamic resizing of drawing window - setup save/load - asynchronous image generation (buttons always work) - GIF output - animation - nine color schemes - color rotation - color change options - detailed statistics WWW: http://www.ibiblio.org/pub/Linux/apps/math/fractals/
* . Add a port of the Szip scientific compression library, used by currentglewis2005-03-171-0/+1
| | | | | | | | | versions of HDF: "Szip is an implementation of the extended-Rice lossless compression algorithm. WWW: http://hdf.ncsa.uiuc.edu/doc_resource/SZIP/"
* DCL is scientific graphic library for geoscience, written in Fortran.sem2005-02-241-0/+1
| | | | | PR: ports/76856 Submitted by: Shin'ya Murakami <murakami (at) ahs.scitec.kobe-u.ac.jp>
* science/cdcl -> update to 5.3 and use gtk by defaultsem2005-02-241-2/+0
| | | | | | | | | | | science/cdcl-gtk -> delete science/ruby-dcl -> update to 1.5 and use gtk by default science/ruby-dcl-gtk -> delete science/ruby-gphys -> update to 0.3.5 and fix dependency science/gave -> update to 1.1.3 and fix dependency PR: ports/76853 Submitted by: maintainer
* McStas - Monte Carlo simulation of neutron instrumentspav2005-02-181-0/+1
| | | | | | | | | | | | | | | McStas is an ongoing project to create a general tool for simulating neutron scattering instruments. The project is conducted at Risoe National Laboratory in cooperation with the ILL. McStas is based on a compiler that reads a high-level specification language defining the instrument to be simulated and produces C code that performs the Monte Carlo Simulation. WWW: http://neutron.risoe.dk/ PR: ports/66031 Submitted by: Joerg Pulz <Joerg.Pulz@frm2.tum.de>
* - Move emulators/qcl -> science/qcl on maintainer's request.pav2005-02-101-0/+1
| | | | Repocopy by: marcus
* Add buddy 2.4, a Binary Decision Diagram library.thierry2005-01-221-0/+1
| | | | | PR: 71221 Submitted by: Leland Wang
* DeViSoR is abbreviated for "Design and Visualization of Software Resource". Thehq2005-01-211-0/+1
| | | | | | | | | | | | | | | | | | | DeViSoRGrid application is part of that software family and is primarily used for the following tasks, so far in 2D only: * Geometry generation * Manual coarse mesh generation * Grid visualisation at all levels All of this can be done in a very confortable manner using a simple point and click interface like in common vector-based image processing software. Both the reliable FEAT file format and the new FEAST format with integrated parallelism are supported. WWW: http://www.featflow.de/ PR: 75973 Submitted by: Pedro F. Giffuni <giffunip@asme.org>
* Add a port of udunits:glewis2005-01-141-0/+1
| | | | | | | | | | | The Unidata units library, udunits, supports conversion of unit specifications between formatted and binary forms, arithmetic manipulation of unit specifications, and conversion of values between compatible scales of measurement. WWW: http://www.unidata.ucar.edu/packages/udunits/ Obtained from: Gentoo (partially)
* Add isaac-cfd 4.2, Integrated Solution Algorithm for Arbitrarythierry2004-12-291-0/+1
| | | | | | | Configuration. PR: 75529 Submitted by: Pedro F. Giffuni
* Add gsystem, a virtual reality simulation framework, specialised on life andpav2004-12-281-0/+1
| | | | | | | | | evolution simulation. I'm a main developer of this framework and I will also keep the FreeBSD port up-to-date, as I'm using FreeBSD as my primary platform. See http://www.g-system.at for details. PR: ports/75466 Submitted by: Raphael Langerhorst <raphael-langerhorst@gmx.at>
* Add x11iraf 1.3.1, which provides graphical tools to work with IRAF.thierry2004-12-261-0/+1
| | | | | PR: 70816 Submitted by: David Syphers.
* Slave port to science/libsvmsem2004-12-111-0/+1
| | | | | PR: ports/73981 Submitted by: Rong-En Fan <rafan(at)infor.org>
* SIMLIB/C++ is the SIMulation LIBrary for C++ programming language. You canpav2004-11-271-0/+1
| | | | | | | | | create models directly in C++ language with the use of predefined simulation tools from the library. SIMLIB allows object-oriented description of models based on simulation abstractions. Current version allows a description of continuous, discrete, combined, 2D/3D vector, and fuzzy models. Requested by: Roman Divacky
* Add omnetpp, a public-source, component-based, modular and open-architecturepav2004-11-151-0/+1
| | | | | | | | | | | simulation environment with strong GUI support and an embeddable simulation kernel. Its primary application area is the simulation of communication networks and because of its generic and flexible architecture, it has been successfully used in other areas like the simulation of IT systems, queueing networks, hardware architectures and business processes as well. PR: ports/73920 Submitted by: Bjoern Koenig <bkoenig@cs.tu-berlin.de>
* Add getdp 1.0.0, a rather general finite element solver using mixedthierry2004-11-151-0/+1
| | | | | | finite elements. Suggested by: Pedro F. Giffuni.
* New port science/gromacsmaho2004-10-191-0/+1
| | | | | | | | | | | GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles, and also the World's fastest Molecular Dynamics under GPL. PR: 71211 Submitted by: Stephen Montgomery-Smith <stephen@math.missouri.edu> Reviewed by: Bruno Afonso <brunomiguel@dequim.ist.utl.pt>
* add py-scipy 0.3ijliao2004-08-261-0/+1
| | | | Scientific tools for Python
* Add vmd, a molecular visualization program for displaying, animating, andpav2004-08-211-0/+1
| | | | | | | analyzing large biomolecular systems using 3-D graphics and built-in scripting. PR: ports/70509 Submitted by: Stephen Montgomery-Smith <stephen@math.missouri.edu>
* Add abinit, calculates total energy, charge densitymaho2004-08-141-0/+1
| | | | and electronic structure of systems.
* Add kst 0.97.markus2004-04-301-0/+1
| | | | | | | | | | | | | | | | | | | | | | kst is a program for looking at data streams. It can plot: - x-y plots - power spectra - histograms - equations (including equations of data streams). - data in files which are being updated as data is being logged, in which case it can act as a plotter for a chart recorder. - much more You can use the mouse to rapidly zoom into interesting parts of the plots. In addition to a complete GUI, kst has a convenient command line interface for rapid access to plotting data in files. kst can read data from stdin. It provides a DCOP interface for remote manipulation, and supports several file formats in use in scientific projects around the world. WWW: http://omega.astro.utoronto.ca/kst/ WWW: http://extragear.kde.org/apps/kst.php
* Remove category pkg/COMMENT files in favour of a COMMENT variable in thekris2004-04-021-0/+2
| | | | | | | category makefile. Submitted by: Matthew Seaman <m.seaman@infracaninophile.co.uk> PR: 59651
* Add ovt 2.3, the Orbit Visualization Tool.thierry2004-03-231-0/+1
| | | | | PR: 57860 Submitted by: Mykola Khotyaintsev <ko@nest.irfu.se>
* A Density functional software. This software has a unique designmaho2004-03-201-0/+1
| | | | | | | | | | | | | based upon the DFT++ algebraic framework introduced in Computer Physics Communications 128, 1-45 (June 2000). This framework allows us to transparently separate the computational guts (cache optimization, parallelization, etc.) from the introduction of new representations (plane waves, wavelets) and new physics (new density functionals, linear response theory, dielectric solutions). The software is fully cache and register optimized, and runs in serial, threaded, MPI and mixed threaded-MPI parallel environments.
* The PSI3 suite of quantum chemical programs is designed for efficient,maho2004-03-191-0/+1
| | | | | | | | high-accuracy calculations of properties of small to medium-sized molecules. The package's current capabilities include a variety of Hartree-Fock, coupled cluster, complete-active-space self-consistent-field, and multi-reference configuration interaction models. Molecular point-group symmetry is utilized throughout to maximize efficiency.
* Add gave, a gtk+ based grid data analyser and viewer written in Ruby.pav2004-03-141-0/+1
| | | | | PR: ports/64249 Submitted by: Shin'ya Murakami <murakami@ahs.scitec.kobe-u.ac.jp>
* Add ruby-gphys, a multi-purpose class to handle gridded physicalpav2004-03-141-0/+1
| | | | | | | quantities for Ruby. PR: ports/64248 Submitted by: Shin'ya Murakami <murakami@ahs.scitec.kobe-u.ac.jp>
* Add ruby-dcl, a ruby interface to DCL, a scienific graphical library.pav2004-02-271-0/+2
| | | | | | | Add ruby-dcl-gtk, a slave port for ruby-dcl with gtk patches. PR: ports/62873, ports/62874 Submitted by: <murashin@edamame.summing.com>
* Add cdcl-gtk, a slave port for science/cdcl with enabled Gtk support.pav2004-02-271-0/+1
| | | | | PR: ports/62872 Submitted by: Shin'ya Murakami <murashin@edamame.summing.com>
* Add cdcl, a scientific graphic library for geosciencepav2004-02-271-0/+1
| | | | | PR: ports/62871 Submitted by: Shin'ya Murakami <murashin@edamame.summing.com>
* Unhook hdf* ports in graphics, hook them in science.pav2004-02-251-0/+2
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* Gramps (Genealogical Research and Analysis Management Programming System)pav2004-02-011-0/+1
| | | | | | | | | | is an open source genealogy program. It is written in Python, using the GTK/GNOME interface. WWW: http://gramps.sourceforge.net PR: ports/62171 Submitted by: Andreas Fehlner <fehlner@gmx.de>
* . Welcome felt to the science category.glewis2003-11-081-0/+1
| | | | | PR: 58178 Submitted by: Pedro F. Giffuni <giffunip@yahoo.com>
* add kmovisto 0.5.1ijliao2003-10-241-0/+1
| | | | A real 3-D molecule viewer
* Remove #maho2003-10-041-1/+1
| | | | chemtool-devel is now real developer version of chemtool.
* New port: science/at Acoustic ToolBoxedwin2003-09-081-0/+1
| | | | | | | | | | | | | | | | | | | | | The Acoustic ToolBox includes four acoustic models: BELLHOP: A beam/ray trace code KRAKEN: A normal mode code SCOOTER: A finite element FFP code SPARC: A time domain FFP code A common input structure has been used throughout so that only minor modifications are needed to switch from one program to another. All the models produce shade files which can be processed using a common set of plotting routines to plot transmission loss vs. range or vs. range and depth. These plotting routines are contained in the GLOBAL directory. PR: ports/42378 Submitted by: Heiner Strauss <heiner@bilch.com>
* Added a Numerical Hartree-Fock Program for Diatomic Molecules.maho2003-07-241-0/+1
| | | | | | This program package calcluates virtually exact solution of the Hartree-Fock and Hartree-Fock-Salter equations for diatomic molecules (distributed under GPL).
* Comment out chemtool-devel, which provides a duplicate chemtool-1.6 versionkris2003-07-221-1/+1
| | | | | | since the upgrade of chemtool. Pointy hat to: maho
* Added new port chemtool-devel.maho2003-05-101-0/+1
| | | | | | | | Chemtool is a nice drawing tool for chemist, however, it has not been released almost 1 year. So I added developer version as -devel. Have fun!
* Add new port science/ghemicalmaho2003-05-041-0/+1
| | | | a computational chemistry software package
* Add gchempaint, a 2D chemical structure editor for GNOME 2.marcus2003-04-081-0/+1
| | | | | PR: 50539 Submitted by: Pav Lucistnik <pav@oook.cz>
* Add gchemutils a set of C++ class and GTK+-2 widgets related to chemistry.marcus2003-04-081-0/+1
| | | | | PR: 50538 Submitted by: Pav Lucistnik <pav@oook.cz>
* add mpb 1.4.2ijliao2003-04-041-0/+1
| | | | MIT Photonic-Bands
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