| Commit message (Collapse) | Author | Age | Files | Lines |
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Requested by: maintainer
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We couldn't update distinfo without inspecting distfile's changes.
PR: ports/37476
Suggested by: kris
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so md5 has to be rewritten.
PR: ports/37476
Submitted by: maintainer
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Noticed by: bento
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build with newer bison
remove BROKEN
PR: 37313
Submitted by: maintainer
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Avida is an auto-adaptive genetic system designed for ALife research
PR: 37268
Submitted by: Jeremy Karlson <karlj000@unbc.ca>
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allowing to analyse several proteins at the same time. The proteins can be
superimposed in order to deduce structural alignments and compare their
active sites or any other relevant parts. Amino acid mutations, H-bonds,
angles and distances between atoms are easy to obtain thanks to the
intuitive graphic and menu interface.
Moreover, Swiss-PdbViewer is tightly linked to Swiss-Model, an automated
homology modelling server developped at Glaxo Welcome Experimental Research
in Geneva. Working with these two programs greatly reduces the amount of work
necessary to generate models, as it is possible to thread a protein primary
sequence onto a 3D template and get an immediate feedback of how well the
threaded protein will be accepted by the reference structure before
submitting a request to build missing loops and refine sidechain packing.
Swiss-PdbViewer can also read electron density maps, and provides various
tools to build into the density. In addition, various modelling tools are
integrated and command files for popular energy minimisation packages can be
generated.
Finally, as a special bonus, POV-Ray scenes can be generated from the
current view in order to make stunning ray-traced quality images.
WWW: http://www.expasy.ch/spdbv/
PR: 33902
Submitted by: chuynh@biolateral.com.au
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add mpich support
PR: 36468
Submitted by: maintainer
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PR: 36395
Submitted by: maintainer
Reported by: bento
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PR: 35198
Submitted by: Tony Maher <tonym@biolateral.com.au>
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PR: 33853
Submitted by: chuynh@biolateral.com.au
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- Bump $PORTREVISION
PR: 36206
Submitted by: David A. Bader <dbader@eece.unm.edu> (MAINTAINER)
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- Bump PORTREVISION
- Poroblem originally reported by Fernan Aguero <fernan@iib.unsam.edu.ar> on
FreeBSD-bio list
PR: 36169
Submitted by: David A. Bader <dbader@eece.unm.edu> (MAINTAINER)
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PR: 35203
Submitted by: maintainer
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PR: 35043
Submitted by: Christian Brueffer <chris@unixpages.org>
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- Update WWW:
PR: 34889
Submitted by: maintainer
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the ECHO macro is set to "echo" by default, but it is set to "true" if
make(1) is invoked with the -s option while ECHO_CMD is always set to
the echo command.
Use command macros where appropriate.
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differences from the PR:
- this port requires Xlib so add USE_XLIB.
- remove unnecessary PORTREVISION.
PR: 34196
Submitted by: maintainer
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PR: 34197
Submitted by: maintainer
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PR: 34180
Submitted by: KATO Tsuguru <tkato@prontomail.com>
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PR: 33719
Submitted by: Hye-Shik Chang <perky@fallin.lv>
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including examples. Add warning.
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PR: 33425
Submitted by: maintainer
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- Update included EMBASSY package EMNU
- Fix a long-standing bug in Makefile that would preclude PKGMESSAGE from
being generated properly
- Consider this an interim update merely to track the latest version - more
work is required to activate the newly included "Jemboss" Java GUI
interface
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PR: 33218
Submitted by: maintainer
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Artemis is a DNA sequence viewer and annotation tool.
PR: 32914
Submitted by: Camson <chuynh@biolateral.com.au>
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PostScript.
PR: 32920
Submitted by: Camson Huynh <chuynh@biolateral.com.au>
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sequencing projects.
PR: 32998
Submitted by: Tony Maher <tonym@biolateral.com.au>
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PR: 32609
Submitted by: Ports Fury
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that does.
* Remove misleading full path name from usage message.
* Improve fgets() usage.
* Add converters category.
* Improve pkg-comment and pkg-descr.
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- use DOCSDIR
PR: 32305
Submitted by: KATO Tsuguru <tkato@prontomail.com>
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the later case
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the later case
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Maintainer does not have previous distfile.
As the distfile for this port is not distributable, it is OK to me to change
distinfo now.
PR: 31010
Submitted by: maintainer
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written in Ruby.
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