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* SHA256ify (manually done and checked)edwin2006-01-222-1/+5
| | | | Approved by: krion@
* SHA256ifyedwin2006-01-2230-0/+41
| | | | Approved by: krion@
* Replace ugly "@unexec rmdir %D... 2>/dev/null || true" with @dirrmtryedwin2006-01-224-12/+12
| | | | | Approved by: krion@ PR: ports/88711 (related)
* Replace ugly "@unexec rmdir %D... 2>/dev/null || true" with @dirrmtryedwin2006-01-221-1/+1
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* Utilize EXAMPLESDIR.danfe2006-01-201-3/+3
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* - Resurrect, update to version 1.5 (literally 1.50 since I wanted to avoiddanfe2006-01-195-0/+57
| | | | | | | | | | | unnecessary PORTEPOCH bump) - Update MASTER_SITES and WWW line, provide backup download site - Come up with better port description - Reset maintainer to ports@ - Uphold CXX and CXXFLAGS - Clean up Makefile slightly - Don't install yet another copy of GPL and texts in French - Add SHA256 hash to distinfo
* - Remove expired portspav2006-01-1417-462/+0
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* - Update to 2.0.20060101pav2006-01-142-2/+4
| | | | | PR: ports/91715 Submitted by: Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
* - Update to 2005.12.06pav2006-01-144-44/+60
| | | | | PR: ports/91714 Submitted by: Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
* - Chase openbabel updatepav2006-01-141-3/+2
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* BROKEN: Broken dependencykris2006-01-141-0/+2
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* - Update graphics/libglut to 6.4.1.sem2006-01-123-4/+7
| | | | | | | | | | | - Shared lib version and PORTREVISION bumb for all affected ports. While I'm here: - Remove USE_MESA knob where it was (35 ports). It marked as depricated for 2 years. PR: ports/90247 Submitted by: Ermal Lu?i <eri--@albabsd.org>
* Fix maintainer addressedwin2006-01-096-6/+6
| | | | | | | | | | | | | | | | | | | | | From: Tony Maher <anthony.maher@uts.edu.au> To: Edwin Groothuis <edwin@FreeBSD.org> Subject: Re: ports/91537: maths/xgobi - download site moved/maintainer addressupdate Actually I need modify all my ports to use OptusNet rather than Biolateral. Is there an easy way to do this or should I submit a separate 1-line patch and PR for each port? biology/crimap biology/dna-qc biology/flip biology/primer3 biology/seqio biology/wise math/xgobi net/generic-nqs Submitted by: Tony Maher <anthony.maher@uts.edu.au>
* Hash with SHA-256.trevor2006-01-071-0/+1
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* - Remove symlinks that belong to mtreepav2006-01-051-2/+0
| | | | Approved by: maintainers
* possible fix to unbreak biology/L-Breederedwin2006-01-029-107/+60
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | L-Breeder is currently marked unfetchable: http://people.freebsd.org/~fenner/portsurvey/biology.html#L-Breeder So I tried to investigate the problem and I'm now submitting my homework so it doesn't get lost. This is what I noticed: i) L-Breeder upstream sources have "stagnated for some time, but now a new simplified version is available" (sic, from the web site) So, the fetch issue is resolved. And the pkg-descr is also updated to reflect the new home page. However: ii) L-Breeder is now called LBreeder. I have changed PORTNAME to reflect this, although I don't know if this is the right thing to do. Should the port be moved to biology/LBreeder? Or perhaps just leaving PORTNAME pointing to the old name and then work inside the Makefile to point the build/install to the correct name? iii) the sources have been reorganized so I have to update the port's Makefile to reflect this. The attached patch works for me under FreeBSD-4.11 (although it's possible that I may have missed a dependency if I already have a required library installed in my box. Sorry, I don't have a tinderbox-like setup to test builds) iv) the program does not have a version number, nor did I find one by looking inside the sources. To avoid changing too much the port I just left PORTVERSION at 1.0 and bumped PORTREVISION to 6 Finally, do note that I am not a user of LBreeder, so I cannot test the program myself. I just noticed that by calling the executable I get a black X screen, that I can quit by pressing 'q' as documented in Readme.txt, but I can't tell myself if this is the expected behaviour. Nor do I know how to use the example files. Caveat emptor. PR: ports/90073 Submitted by: Fernan Aguero <fernan@iib.unsam.edu.ar> Approved by: maintainer timeout
* - New upstream version; two patches incorporated.tdb2005-12-105-39/+9
| | | | | | PR: 90140 Submitted by: Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer) Approved by: clement (mentor)
* Update to 1.3.1ehaupt2005-12-062-3/+3
| | | | | PR: 90029 Submitted by: Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
* - Update to 2005.13.07 to make fetchable againtdb2005-12-063-6/+31
| | | | | | PR: 89976 Submitted by: Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer) Approved by: clement (mentor)
* - Update to 3.18 to make fetchable againtdb2005-12-062-6/+11
| | | | | | | | - Mark broken on 6.x upwards PR: 89977 Submitted by: Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer) Approved by: clement (mentor)
* Update to 0.5.1mnag2005-12-063-23/+6
| | | | | | | | Unbroken >= 502126 Add SHA256 PR: 89980 Submitted by: maintainer
* - Fix fetch problemstdb2005-12-052-3/+5
| | | | | | PR: 89971 Submitted by: Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer) Approved by: clement (mentor)
* Add conflicts:edwin2005-12-041-1/+1
| | | | | | CONFLICTS= p5-bioperl-1.[02468]* Submitted by: Fernan Aguero <fernan@iib.unsam.edu.ar>, Mauricio Herrera Cuadra <arareko@yahoo.com>
* Add conflicst:edwin2005-12-041-0/+2
| | | | | | CONFLICTS= p5-bioperl-1.[13579]* Submitted by: Mauricio Herrera Cuadra <arareko@yahoo.com>,Fernan Aguero <fernan@iib.unsam.edu.ar>
* Fix port: biology/p5-bioperl-develedwin2005-12-041-0/+2
| | | | | | | | | This patch adds a LATEST_LINK line in the Makefile to avoid duplication with the 'p5-bioperl' port in the packages/Latest directory. PR: ports/89916 Submitted by: Mauricio Herrera Cuadra <mauricio@arareko.net>
* - Re-add p5-bioperl-devel, development version of biology/p5-bioperlbarner2005-12-026-0/+2586
| | | | | | | (A collection of Perl modules for bioinformatics) PR: ports/89497 Submitted by: Mauricio Herrera Cuadra <arareko@yahoo.com>
* - Unbreak by updating to 4.4barner2005-12-014-25/+22
| | | | | | | - Add dependecy to MESA PR: ports/89795 Submitted by: Johan van Selst <johans@stack.nl>
* Add the right MASTER_SITE_SUBDIR, so that this port is fetchable fromfenner2005-11-261-0/+1
| | | | 20 sites instead of just 1.
* - Add SHA256pav2005-11-2416-0/+16
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* - Drop old povchem.c checksumpav2005-11-241-1/+4
| | | | - Add SHA256, SIZE
* - BROKEN: Size mismatchpav2005-11-231-0/+2
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* BROKEN: Size mismatchkris2005-11-161-0/+2
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* Mass-conversion to the USE_AUTOTOOLS New World Order. The code presentade2005-11-152-2/+2
| | | | | | | | | | | | | | | | | in bsd.autotools.mk essentially makes this a no-op given that all the old variables set a USE_AUTOTOOLS_COMPAT variable, which is parsed in exactly the same way as USE_AUTOTOOLS itself. Moreover, USE_AUTOTOOLS has already been extensively tested by the GNOME team -- all GNOME 2.12.x ports use it. Preliminary documentation can be found at: http://people.FreeBSD.org/~ade/autotools.txt which is in the process of being SGMLized before introduction into the Porters Handbook. Light blue touch-paper. Run.
* - Mark it as DEPRECATED - master site disapearedgarga2005-11-111-0/+3
| | | | | | | | - Set EXPIRATION_DATE PR: ports/88003 Submitted by: Jean Milanez Melo <jmelo@freebsdbrasil.com.br> Approved by: maintainer timeout (17 days)
* - Mark it as DEPRECATED - master site disapearedgarga2005-11-111-0/+3
| | | | | | | | - Set EXPIRATION_DATE PR: ports/88002 Submitted by: Jean Milanez Melo <jmelo@freebsdbrasil.com.br> Approved by: maintainer timeout (17 days)
* - Mark it as DEPRECATED (mastersite disapeared)garga2005-11-111-0/+3
| | | | | | | | - Set EXPIRATION_DATE PR: ports/88000 Submitted by: Jean Milanez Melo <jmelo@freebsdbrasil.com.br> Approved by: maintainer timeout (16 days)
* With portmgr hat on, reset maintainership of knu's ports since he haslinimon2005-11-111-1/+1
| | | | been inactive more than 6 months. We hope to see him back sometime.
* Update to 1.41mnag2005-11-115-44/+87
| | | | | | | | Take MAINTAINER Add SHA256 PR: 88792 Submitted by: Mauricio Herrera Cuadra <mauricio@arareko.net>
* Update to 3.14bmnag2005-11-102-9/+11
| | | | | | | | | | Update MASTER_SITES Add SHA256 Remove extra TABS PR: 88007 Submitted by: Jean Milanez Melo <jmelo@freebsdbrasil.com.br> Approved by: maintainer timeout, 14 days
* Remove expired portskris2005-11-057-110/+0
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* Bump PORTREVISION to chase the glib20 shared library update.marcus2005-11-054-3/+4
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* Mark DEPRECATED since upstream is unmaintained and mastersite is gone.lawrance2005-10-291-0/+3
| | | | | | PR: ports/88004 Submitted by: Jean Milanez Melo <jmelo@freebsdbrasil.com.br> Approved by: Tony Maher <anthony.maher@uts.edu.au> (maintainer)
* BROKEN: Unfetchablekris2005-10-281-0/+2
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* Add p5-Bio-ASN1-EntrezGene, a Regular expression-based Perl Parser forehaupt2005-10-155-0/+61
| | | | | | | | NCBI Entrez Gene. PR: 87423 Submitted by: Mauricio Herrera Cuadra <mauricio@arareko.net> Approved by: novel (mentor) (implicit)
* - Update to 20050605sem2005-10-115-20/+36
| | | | | PR: ports/87266 Submitted by: maintainer
* - Update to 3.13. It fixes fetching.sem2005-10-114-167/+61
| | | | | PR: ports/87264 Submitted by: maintainer
* Update to 0.9.8maho2005-10-103-318/+363
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* Checking MACHINE_ARCH is deprecated.trevor2005-09-231-1/+1
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* Update to version 7hq2005-09-203-47/+160
| | | | | | PR: 86196 Submitted by: Tony Maher <anthony.maher@uts.edu.au> Approved by: maintainer
* Don't strip static libraries on installation ;)vs2005-09-141-1/+2
| | | | (Unbreaks e.g. biology/nclever)
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