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* Delete biology/gaussian98. Maintain is too hard andmaho2003-01-3111-820/+0
| | | | gray in license
* Update to 0.4.0.knu2003-01-293-14/+26
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* add '-f' argument to rm so that the script always work even if alioux2003-01-231-1/+1
| | | | | | file is not there Submitted by: Frerich Raabe <frerich.raabe@gmx.de>
* New Port: biology/actedwin2003-01-166-0/+1031
| | | | | PR: ports/35753 Submitted by: Camson Huynh <chuynh@biolateral.com.au>
* Add missing filekris2003-01-141-0/+1
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* Add some missing fileskris2003-01-141-0/+4
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* Update to 3.8arved2003-01-083-22/+6
| | | | Approved by: rmiya@cc.hirosaki-u.ac.jp (maintainer)
* update biology/babel to properly output mm3 files.edwin2003-01-032-1/+93
| | | | | PR: ports/42425 Submitted by: Glenn Johnson <glennpj@charter.net>
* upgrade to 3.7ijliao2003-01-025-193/+255
| | | | | PR: 44957 Submitted by: maintainer
* add missing includeijliao2002-12-291-0/+10
| | | | | PR: 46584 Submitted by: Ports Fury
* fix build on -currentijliao2002-12-225-0/+53
| | | | | PR: 46459 Submitted by: Ports Fury
* Fix typo: distribfold.org -> distributedfolding.orglioux2002-12-192-2/+2
| | | | Submitted by: Matt Mills <alpha@vanity.com>
* o Update to 20021105 snapshotlioux2002-12-192-4/+9
| | | | | | | | | | o Depend on compat4x on OSVERSION >= 500000 since these are 4.5-RELEASE binaries o House a copy under MASTER_SITE_LOCAL: the local copy will be versioned, developer has yet to be convinced of the advantages of distributing versioned files Approved by: portmgr (knu)
* Mark BROKEN due to "Unknown problem"lioux2002-11-251-0/+2
| | | | Submitted by: maintainer
* unbroke by upgrade to 20021018ijliao2002-11-208-30/+72
| | | | | | | drop maintainership PR: 45466 Submitted by: old maintainer
* add treepuzzle 5.1ijliao2002-11-206-0/+41
| | | | | | | Maximum likelihood phylogeny reconstruction using quartets PR: 45241 Submitted by: Jan Lentfer <lentferj@neslonek.bio.tu-darmstadt.de>
* 1. add a missing dependency on png and unbreak.maho2002-11-191-2/+3
| | | | 2. change e-mail address of maho.
* o Rollback PORTCOMMENT modifications while this feature's implementationlioux2002-11-106-6/+3
| | | | | | | | is better studied o Turn PORTCOMMENT variable in Makefile back into pkg-comment files Approved by: kris (portmgr hat), portmgr, re (silence)
* Update WWWarved2002-11-071-1/+1
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* Updated to fix problems as stated in PR ports/42915edwin2002-11-073-2/+42
| | | | | PR: ports/42915 Submitted by: Tony Maher <tonym@biolateral.com.au>
* Fix PORTCOMMENTs that were killing INDEX builds.adamw2002-11-072-2/+1
| | | | | 105 pointy hats to: me Approved by: pat
* Use PORTCOMMENT in the Makefile, and whack the pkg-comment.adamw2002-11-068-4/+8
| | | | Approved by: pat
* Modify replace RE to match syntax of sed now ("\)" -> ")"edwin2002-11-051-8/+8
| | | | Noticed by: bento
* PERL -> REINPLACEedwin2002-11-044-10/+15
| | | | And some ports have USE_PERL5=yes now.
* PERL -> REINPLACEedwin2002-11-041-1/+2
| | | | Noticed on: bento
* PERL -> REINPLACEedwin2002-11-042-2/+4
| | | | Noticed on: bento
* Port needs perl to build.edwin2002-11-041-0/+2
| | | | Seen on: bento
* Make biology/avida building on -current againedwin2002-11-032-3/+2
| | | | | | PR: ports/44819 Submitted by: Oliver Lehmann <lehmann@ans-netz.de> Approved by: Jeremy Karlson <karlj000@unbc.ca>
* Add another entry for MASTER_SITES and unbreak with latest version of bisonpat2002-10-293-1/+25
| | | | | PR: ports/44711 Submitted by: maintainer
* Update CATEGORIES as per ports/44331.tom2002-10-211-2/+2
| | | | | | | While I'm here, remove unnecessary whitespace spotted by portlint. PR: ports/44331 Submitted by: Martin Klaffenboeck <martin.klaffenboeck@gmx.at>
* o Update to snapshot 20021015lioux2002-10-192-4/+17
| | | | o Fix an issue with the startup scripts
* Fix dependency on wxgtkkris2002-10-191-1/+1
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* CC, CXX, CFLAGS, PTHREAD_CFLAGS and PTHREAD_LIBS may contain `/' inknu2002-10-101-1/+1
| | | | | them when using a non-default compiler/linker, so do not use `/' as delimiter for s///. (I picked `|' instead)
* Connect distribfold to build after moving it from misc categorylioux2002-10-071-0/+1
| | | | | | | Prompted by: kris, Adam Weinberger <adam@vectors.cx>, Fernan Aguero <fernan@iib.unsam.edu.ar>, others
* o New port distribfold version 0.1: distribfold.org distributed proteinlioux2002-10-0711-0/+374
| | | | | | folding project o One can start multiple instances of this port. Just install it using WITH_NCPU
* Use RUBY_MOD*.knu2002-10-062-31/+31
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* - Unbreak fetching of distfiles. (Needs update as soon as freeze is over.)wjv2002-09-272-9/+7
| | | | | Submitted by: kris, bento Approved by: Implicitly by first rule of ports freeze, I hope!
* add forgotten "USE_REINPLACE=yes"ijliao2002-09-211-0/+1
| | | | Submitted by: maintainer
* upgrade to 20020426ijliao2002-09-216-22/+16
| | | | | PR: 39357 Submitted by: maintainer
* BROKEN: Does not fetchkris2002-09-201-0/+2
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* BROKEN: Does not buildkris2002-09-191-0/+2
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* add primer3 0.9ijliao2002-09-176-0/+437
| | | | | | | Primer3 helps to choose primers for PCR reactions PR: 35298 Submitted by: Tony Maher <tonym@biolateral.com.au>
* Flip is used to find/translate orfs.dinoex2002-09-106-0/+33
| | | | | | WWW: ftp://megasun.bch.umontreal.ca/pub/flip/ PR: 35332 Submitted by: tonym@biolateral.com.au
* "Wise2 is package that is focused on comparing DNA sequences atdinoex2002-09-107-0/+185
| | | | | the level of its conceptual translation, regardless of sequencing error and introns."
* Chase new name of wxgtk shared library.sobomax2002-09-091-1/+1
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* Remove USE_NEWGCC, which is no longer supported or required.kris2002-08-311-1/+0
| | | | | Submitted by: Tilman Linneweh <tilman@arved.de> PR: ports/40571
* Deploy USE_GNOMENG infrastructurelioux2002-08-302-2/+4
| | | | | PR: 42187 Submitted by: Edwin Groothuis <edwin@mavetju.org>
* o Fix examples directory path which is changed in last revision.perky2002-08-261-1/+5
| | | | Submitted by: Glenn Johnson <glennpj@charter.net>
* o Fix RUN_DEPENDS path (PMW -> Pmw)perky2002-08-252-4/+33
| | | | | | | | | o Fix DISTNAME which was broken by previous commit. o Install example files PR: 41977 Submitted by: Glenn Johnson <glennpj@charter.net> Approved by: maintainer
* Prefer <limits.h> over <values.h> as the latter has been removed fromkris2002-08-234-0/+44
| | | | | | -current. Noticed by: bento
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