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* - Update the included (optional) Biopython-CORBA pacakge to version 0.3.0wjv2001-10-025-263/+210
| | | | | | - If CORBA support is included, the default ORB has changed from omniORB to ORBit - PORTREVISION bump
* Add nclever 4.0, a character-based version of NCBI's Entrez program.wjv2001-09-268-0/+105
| | | | | PR: 30783 Submitted by: Tony Maher <tonym@biolateral.com.au>
* - Add NO_LATEST_LINK, which should've been there in the first place. :-(wjv2001-09-201-0/+1
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* - Add installation of include fileswjv2001-09-194-134/+445
| | | | | | | - Bump PORTREVISION PR: 30660 Submitted by: Tony Maher <tonym@biolateral.com.au> (MAINTAINER)
* style fix: un"echo" commandslioux2001-09-131-40/+40
| | | | Approved by: MAINTAINER
* Update to 3.9lioux2001-09-1312-116/+161
| | | | | PR: 30398 Submitted by: MAINTAINER
* Bump png majorache2001-09-111-1/+1
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* Fix a buglet with the use of XFREE86_VERSION without includingtobez2001-09-061-1/+3
| | | | | | bsd.port.pre.mk first. Spotted by: Dan Langille <dan@langille.org>
* Make biology/rasmol work at all color depths.tobez2001-09-064-8/+91
| | | | | PR: 30406 Submitted by: Glenn Johnson <gjohnson@srrc.ars.usda.gov>
* - Update to version 1.00.a3wjv2001-09-064-105/+167
| | | | - Use pkg-req to check the installed version of Python
* - Update to version 3.1wjv2001-08-294-6/+18
| | | | | PR: 30176 Submitted by: David A. Bader <dbader@eece.unm.edu> (MAINTAINER)
* - Update to version 1.0.3wjv2001-08-292-3/+3
| | | | | PR: 30175 Submitted by: David A. Bader <dbader@eece.unm.edu> (MAINTAINER)
* - Update to version 1.2.4wjv2001-08-222-2/+2
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* - Update port to version 2.2gwjv2001-08-224-223/+34
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* Add seqio 1.2.2, a set of C functions which can read/writewjv2001-08-2210-0/+400
| | | | | | | biological sequence files. PR: 29922 Submitted by: Tony Maher <tonym@biolateral.com.au>
* - Update to version 3.6.a2.1 - since the distribution tarball hadn't beenwjv2001-08-225-43/+30
| | | | | | | | | renamed between versions, this port failed checksum. - Apply some whitespace edits and cut pkg-descr down to size to placate portlint. Reported by: Jason Stajich <jason@chg.mc.duke.edu> Approved by: No response from MAINTAINER
* - Move the (very) long list of manpages from the port Makefile to a separatewjv2001-08-202-123/+240
| | | | | | file. Inspired by: nectar's treatment of security/heimdal
* Update to 0.95.trevor2001-08-204-27/+30
| | | | | | | Compile molecule_tools.cpp with -O0 on all architectures, not just the Alpha, to avoid g++ pessimization. Submitted by: Matthew Emmerton <matt@gsicomp.on.ca>
* Remove a patch turd from the pkg-plistkris2001-08-201-1/+0
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* Add treeviewx 0.1.1, a phylogenetic tree viewer.wjv2001-08-179-0/+82
| | | | | PR: 29770 Submitted by: Tony Maher <tonym@biolateral.com.au>
* Add p5-bioperl-devel 0.9.0,wjv2001-08-148-0/+566
| | | | | a collection of Perl modules for bioinformatics (developer's release).
* Update to version 1.75wjv2001-08-134-14/+27
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* - Properly list run-time dependencies in RUN_DEPENDS in Makefile.wjv2001-08-133-40/+46
| | | | | | | - Deploy %%PERL_VER%% and %%PERL_ARCH%% pragmas consistently throughout pkg-plist. (Ouch, that was embarrassing.) - Bump PORTREVISION due to the above. - Update my email address and the project's URL in pkg-descr.
* upgrade to 0.26ijliao2001-08-095-32/+30
| | | | drop maintainership
* Add lamarc 2001.08.06,wjv2001-08-075-0/+42
| | | | | a package of programs for computing population parameters.
* Add recombine 1.40, a program to fit population models across sites.wjv2001-08-067-0/+166
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* Add fluctuate 1.30, a program to fit population models.wjv2001-08-067-0/+89
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* Add coalesce 1.50, a program to fit population models.wjv2001-08-067-0/+73
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* Correct my email address.wjv2001-08-061-1/+1
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* Add migrate 1.2,wjv2001-08-066-0/+63
| | | | | a program to estimate population sizes and migration rates.
* Update maintainer's email address.wjv2001-08-061-1/+1
| | | | Approved by: MAINTAINER
* - Update port to version 2.0.1wjv2001-08-035-24/+110
| | | | - Add two new EMBASSY applications, MEME and HMMER.
* add USE_XLIBlioux2001-07-301-0/+2
| | | | | PR: 29330 Submitted by: bento, Patrick Li <pat@databits.net>
* This port require bison to build so add USE_BISON.steve2001-07-251-0/+1
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* Remove obsolete pointer to online documentation.wjv2001-07-111-4/+2
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* Update package's URL; my email address.wjv2001-07-112-3/+3
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* Update Tony Maher's email address.fenner2001-07-101-1/+1
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* ${PREFIX}/share/${PORTNAME} --> ${DATADIR}sobomax2001-07-101-2/+2
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* Update to version 1.00.a2wjv2001-07-096-8/+46
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* Add NOPORTDOCS support to pkg-plistijliao2001-07-0811-1381/+1380
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* Update to version 1.3.0wjv2001-07-062-3/+3
| | | | | PR: 28761 Submitted by: Patrick Li <pat@databits.net>
* - General clean-up of port.wjv2001-07-055-38/+252
| | | | | | | - Install PDF and HTML documentation. - Take over maintainership. Approved by: Silence from previous maintainer; no objections from -ports
* - Update to version 0.7.1wjv2001-07-044-3/+24
| | | | - Add a build-time message to inform the user of available options.
* - Add %%PORTDOCS%% support to pkg-plist.wjv2001-07-042-3/+3
| | | | | | | - $INSTALL_MAN -> $INSTALL_DATA in Makefile where appropriate. PR: 28668 Submitted by: Patrick Li <pat@databits.net>
* Add grappa 1.0.2, Genome Rearrangements Analysis and Phylogenywjv2001-07-047-0/+64
| | | | | | | Software. PR: 28541 Submitted by: dbader@eece.unm.edu
* Add %%PORTDOCS%% support to pkg-plist, and tweak Makefile slightly to supportwjv2001-07-042-107/+107
| | | | | | | it. PR: 28665 Submitted by: Patrick Li <pat@databits.net>
* Add %%PORTDOCS%% suppor to pkg-plist.wjv2001-07-032-12/+12
| | | | | | | Change $PREFIX to $MAN1PREFIX as appropriate in Makefile. PR: 28664 Submitted by: Patrick Li <pat@databits.net>
* Add support for %%PORTDOCS%%.wjv2001-07-031-42/+42
| | | | | PR: 28670 Submitted by: Patrick Li <pat@databits.net>
* Replace erroneous usage of INSTALL_MAN with INSTALL_DATA.wjv2001-07-032-2/+2
| | | | | PR: 28666 Submitted by: Patrick Li <pat@databits.net>
* Update to version 3.04wjv2001-07-033-5/+5
| | | | | PR: 28614 Submitted by: David A. Bader <dbader@eece.unm.edu> (MAINTAINER)
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