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* - Update to 1.6.0kevlo2000-10-103-363/+372
| | | | | | | - Reorder packing list PR: 21857 Submitted by: MAINTAINER
* - Update biology/p5-AcePerl from 1.62 to 1.67kevlo2000-10-106-61/+88
| | | | | | | | | | | - Alphabetise ${PLIST} to ease future maintenance - Port now compiles in XS optimisations and RPC server interface - Port now honours ${CC} properly, also for compiled extensions - Port now uses PERL_CONFIGURE - Hand over port MAINTAINERship to FreeBSD bio-porters mailing list PR: 21865 Submitted by: MAINTAINER
* Initiail version of nab (4.2)jeh2000-10-1017-0/+666
| | | | | PR: 21585 Submitted by: M. L. Dodson <bdodson@scms.utmb.EDU>
* This is nab (nucleic acid builder), a language for macromoleculesjeh2000-10-101-0/+1
| | | | | PR: 21585 Submitted by: M. L. Dodson <bdodson@scms.utmb.EDU>
* - Fix MASTER_SITES/DISTNAMEjeh2000-10-103-20/+19
| | | | | | | | | | | | - USEPGPLOT -> WITH_PGPLOT - Support FFLAGS/X11BASE properly Remove file: files/patch-ab PR: 21608 Submitted by: KATO Tsuguru <tkato@prontomail.ne.jp> Approved by: rmiya@cc.hirosaki-u.ac.jp (Ryo MIYAMOTO) MAINTAINER
* The last commit changes the ports and therefore need a PORTREVISION bumpjeh2000-10-102-0/+2
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* Support PREFIX properlyjeh2000-10-102-1/+5
| | | | | | PR: 21607 Submitted by: KATO Tsuguru <tkato@prontomail.ne.jp> Approved by: rmiya@cc.hirosaki-u.ac.jp (Ryo MIYAMOTO) MAINTAINER
* - Fix MASTER_SITESjeh2000-10-104-18/+36
| | | | | | | | | | | | | - Support CC/LOCALBASE/X11BASE/PREFIX properly Remove file: patches/patch-aa Approval from MAINTAINER after sending EMail PR: 21609 Submitted by: KATO Tsuguru <tkato@prontomail.ne.jp> Approved by: Chen Hsiung Chan <frankch@waru.life.nthu.edu.tw> MAINTAINER
* Add do-install target to port's Makefile. Remove patch sectiontrevor2000-10-082-10/+5
| | | | | | | adding install target to ${WRKSRC}/Makefile. PR: 21792 Submitted by: Kato Tsuguru <tkato@prontomail.ne.jp>
* Change PKGDIR from pkg/ to . Also fix places where ${PKGDIR} isasami2000-10-081-1/+1
| | | | | | spelled out (many of which are ${PKGDIR}/MESSAGE -> ${PKGMESSAGE} type fixes that shouldn't have been necessary) and the string "/pkg/" appear.
* Rename ${FILESDIR}/patch-* to ${PATCHDIR}/extra-patch-*.asami2000-10-071-2/+2
| | | | | (This should probably be rewritten to use EXTRA_PATCHES but I don't have time to test it now.)
* Implement USE_GTK, part 1.reg2000-10-053-38/+26
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* - Support CC/CFLAGS/PREFIX properlyjeh2000-10-036-8/+127
| | | | | | | | | | | | - gets() -> fgets() - Add WWW: line into pkg/DESCR Also bumped PORTREVISION to 1 PR: 21572 Submitted by: tkato@prontomail.ne.jp <KATO@FreeBSD.ORG, Tsuguru@FreeBSD.ORG> Reviewed by: will Approved by: MAINTAINER (dbader@eece.unm.edu)
* Correct and sort PLISTs.reg2000-10-022-6/+6
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* Change MAINTAINER for my ports.trevor2000-10-021-1/+1
| | | | Approved by: will
* Add USE_XLIBkris2000-09-221-0/+1
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* respect CXX and CXXFLAGS (Kato Tsuguru)ade2000-09-184-20/+39
| | | | | | | | | | install data files (Kato Tsuguru) bump version (myself) use USE_NEWGCC (Will Andrews) make whitespace changes to Makefile PR: 21359 Submitted by: maintainer
* Update to 0.90.d03nbm2000-09-113-132/+152
| | | | | PR: 21202 Submitted by: Johann Visagie <johann@egenetics.com>
* Fix checksumkevlo2000-09-091-18/+1
| | | | | PR: 21115 Submitted by: Andreas Schulz <ats@first.gmd.de>
* Don't break package building on Satoshi's cluster. Explicitly dependtg2000-09-081-1/+1
| | | | on python1.5:lang/python15.
* Upgrade to 1.5.0nbm2000-09-084-66/+113
| | | | | PR: 21108 Submitted by: Johann Visagie <johann@egenetics.com>
* Update to emboss 1.4.0.nbm2000-09-074-52/+83
| | | | | PR: ports/20898 Submitted by: Johann Visagie <johann@egenetics.com>
* Update to version 2000.08.24kevlo2000-09-044-7/+23
| | | | | PR: 20897 Submitted by: MAINTAINER
* USE_LIBTOOL implies GNU_CONFIGURE, so remove redundant GNU_CONFIGURE lines.sobomax2000-08-211-1/+0
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* Update to emboss 1.1.0, fixing some style bugs too.nbm2000-08-125-6/+321
| | | | | PR: ports/20519 Submitted by: Johann Visagie <johann@egenetics.com> (maintainer)
* Upgrade to 0.90.d02.will2000-08-052-3/+3
| | | | | PR: 20383 Submitted by: maintainer
* Fix MASTER_SITESjedgar2000-08-011-1/+1
| | | | | PR: 20120 Submitted by: Maintainer
* Add emboss, the European Molecular Biology Open Software Suitenbm2000-07-316-0/+700
| | | | | PR: ports/20317 Submitted by: Johann Visagie <johann@egenetics.com>
* Add py-biopython, is a collection of Python packages and modules creatednbm2000-07-316-0/+166
| | | | | | | | by the Biopython Project, intended to provide the basis for building bioinformatics applications in the Python language. PR: ports/20260 Submitted by: Johann Visagie <johann@egenetics.com>
* Add BioPerl, a collection of Perl5 mods for bioinformatics/genomicsnbm2000-07-287-0/+259
| | | | | PR: ports/20252 Submitted by: Johann Visagie <johann@egenetics.com>
* Add p5-AcePerl, a perl interface to the ACEDB genome database systemnbm2000-07-289-0/+177
| | | | | PR: ports/20223 Submitted by: Johann Visagie <johann@egenetics.com>
* Add sim4, an implementation of the sim4 algorithm for aligning expressednbm2000-07-277-0/+48
| | | | | | | DNA with genomic sequences PR: ports/20219 Submitted by: Johann Visagie <johann@egenetics.com>
* Add xdrawchem 0.82 - a program for drawing moleculesalex2000-07-197-0/+65
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* Activating the chemeq, clustalw, paml, and phylip ports.steve2000-07-101-0/+4
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* Adding phylip version 3.5.steve2000-07-105-0/+161
| | | | | | | | | This is a FREE package of programs for inferring phylogenies and carrying out certain related tasks. At present it contains 30 programs, which carry out different algorithms on different kinds of data. PR: 19705 Submitted by: David A. Bader <dbader@cielo.eece.unm.edu>
* Add paml version 3.01.steve2000-07-107-0/+89
| | | | | | | | A set of utilities for performing Phylogenetic Analysis by Maximum Likelihood (PAML). PR: 19753 Submitted by: David A. Bader <dbader@cielo.eece.unm.edu>
* Adding clustalw version 1.81.steve2000-07-106-0/+66
| | | | | | | A CLUSTAL W Multiple Sequence Alignment Program. PR: 19746 Submitted by: David A. Bader <dbader@cielo.eece.unm.edu>
* Adding chemeq version 1.10.steve2000-07-105-0/+62
| | | | | | | Outputs LaTeX code for chemical reactions. PR: 19374 Submitted by: Ryo MIYAMOTO <rmiya@cc.hirosaki-u.ac.jp>
* - Use GTK_CONFIG/GLIB_CONFIG instead of hardcoded gtk12-config/glib12-configsteve2000-07-072-19/+27
| | | | | | | - Support CC/CFLAGS/PREIFX/LOCALBASE/X11BASE/MAKE/etc. properly PR: 19623 Submitted by: KATO Tsuguru <tkato@prontomail.ne.jp>
* Unbreak by extracting the correct distfilekris2000-07-031-8/+2
| | | | Noticed by: bento
* ...local-distfiles... -> MASTER_SITE_LOCALalex2000-06-201-1/+2
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* fc is ftn77 now, adjust accordingly.alex2000-06-113-5/+6
| | | | | | PR: 19160, 19161 Submitted by: Glenn Johnson <gjohnson@nola.srrc.usda.gov> Reviewed by: will
* Update to version 1.0.3alex2000-06-114-24/+23
| | | | | | | | | | | | PR: 19094 Submitted by: maintainer While I'm hear, clean up the port, e.g.: * Don't create/delete PATCHDIR while building this port * put the distfile, which is unversioned, to my local-distfiles space. * remove/reorder some actions, such as stripping twice. Reviewed by: will
* Clean up this port so that it installs stuff in a more proper locationwill2000-06-093-138/+138
| | | | | | | as per hier(7) and Porter's Handbook. PR: 18929 Submitted by: MAINTAINER
* Update to the latest version as of 5 June.knu2000-06-084-15/+26
| | | | | PR: ports/19113, ports/19115 Submitted by: Maintainer
* Fix build for 4.0 and later. Make DESCR shorter.will2000-06-075-165/+181
| | | | | PR: 19092 Submitted by: MAINTAINER
* Update to 3.6.will2000-06-076-114/+145
| | | | | PR: 19091 Submitted by: MAINTAINER
* Convert to usable F77 binary, especially on 4.0 and newer.will2000-06-074-82/+73
| | | | | PR: 19090 Submitted by: MAINTAINER
* Fix MD5 checksum. Since I was unable to find an older version of thewill2000-06-041-1/+1
| | | | | | | distfile, I can't say what changes were made. PR: 18986 Submitted by: Andreas Schulz <ats@first.gmd.de>
* Fix this port after the recent PORT{NAME,VERSION} changes. portlint(1)steve2000-05-281-2/+4
| | | | while I'm here.
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