summaryrefslogtreecommitdiffstats
path: root/biology
Commit message (Collapse)AuthorAgeFilesLines
* - Unbreak by upgrading to 4.2;thierry2004-08-194-444/+387
| | | | | | | | - Use DIST_SUBDIR because tarball is not versioned; - Add sysdate to PORTVERSION to handle minor revisions; - Do some cleaning.
* biology/lsysexp is not brokenedwin2004-08-181-3/+5
| | | | | | | fix gtk build error PR: ports/70598 Submitted by: David Yeske <dyeske@yahoo.com>
* This is now buildable on 5.x, remove BROKEN.kris2004-08-171-7/+1
|
* After devel/p5-File-Temp has gained an IGNORE for PERL_LEVEL > 500800, allmat2004-08-121-1/+3
| | | | | these ports were broken because they always depended on it. I've rearranged all the dependencies to fit the new scheme.
* - Update to 5.2pav2004-07-302-3/+13
| | | | | PR: ports/69799 Submitted by: Jan Lentfer <Jan.Lentfer@web.de> (maintainer)
* Use X_IMAKE_PORT instead of dist-specific imake dependencies. While here,anholt2004-07-231-6/+3
| | | | make the BROKEN message a little more informative.
* Update to version 2.7.2.1.1krion2004-07-095-42/+35
| | | | | PR: ports/68861 Submitted by: Ports Fury
* Apply a big libtool patch to allow porters to use the libtool installed bymarcus2004-07-091-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | the libtoolX ports instead of the one included with each port. Ports that set USE_LIBTOOL_VER=X will now use the ports version of libtool instead of the included version. To restore previous behavior, use the new macro, USE_INC_LIBTOOL_VER. Both macros accept the same argument: a libtool version. For example, to use the ports version of libtool-1.5, add the following to your Makefile: USE_LIBTOOL_VER= 15 To use the included version of libtool with extra hacks provided by libtool-1.5, add the following to your Makefile: USE_INC_LIBTOOL_VER= 15 With this change, ports that had to add additional libtool hacks to prevent .la files from being installed or to fix certain threading issues can now delete those hacks (after appropriate testing, of course). PR: 63944 Based on work by:eik and marcus Approved by: ade (autotools maintainer) Tested by: kris on pointyhat Bound to be hidden problems: You bet
* Fix distsitevs2004-07-061-2/+1
| | | | | | PR: ports/67473 Submitted by: Roman Neuhauser Approved by: maintainer timeout
* BROKEN: Checksum mismatchkris2004-07-031-0/+2
|
* Update to 4.6vs2004-07-027-51/+58
| | | | | PR: ports/68561 Submitted by: maintainer
* BROKEN: Does not buildkris2004-07-021-0/+2
|
* Update to fix fetch. Rework PORTVERSION to be more like biology/fasta3linimon2004-07-014-9/+11
| | | | | | | | and pacify portlint. PR: ports/67428 Submitted by: Roman Neuhauser <neuhauser at chello dot cz> Approved by: maintainer timeout (one month)
* Chase mastersite and fix checksum to unbreak. (Changes are inclusion of alinimon2004-07-012-8/+4
| | | | | | | | | logfile, one Linux-only change, and one change in a test script). Assign submitter as new maintainer as current one has not responded to PRs for some time. PR: ports/68199 Submitted by: Fernan Aguero <fernan at iib dot unsam dot edu dot ar>
* Update to 1.7.6.1.linimon2004-06-304-11/+43
| | | | | | PR: ports/67429 Submitted by: Roman Neuhauser <neuhauser at chello dot cz> Approved by: maintainer timeout (4 weeks)
* Drop maintainershiplioux2004-06-241-1/+1
|
* Fix MASTER_SITES:vs2004-06-231-2/+2
| | | | | | | | | - add trailing slash - ftp.ebi.ac.uk only has 2.8.0 PR: ports/67427 Submitted by: Roman Neuhauser Approved by: maintainer timeout
* Add ariadne 1.3, programs to compare protein sequences andkrion2004-06-225-0/+60
| | | | | | | profiles, using the Smith-Waterman algorithm. PR: ports/67811 Submitted by: Fernan Aguero <fernan@iib.unsam.edu.ar>
* Set an expiry date of 2004-08-20 for these BROKEN/IGNORE/FORBIDDENkris2004-06-212-1/+5
| | | | | ports. They will be removed on or after that date if they are still broken and no fix has been submitted to GNATS.
* BROKEN: Checksum mismatchkris2004-06-201-0/+2
|
* Replace explicit imake dependency with USE_IMAKE=yesanholt2004-06-181-5/+1
|
* Update to 20040613 releaselioux2004-06-132-3/+3
|
* - Remove obsolete MASTER_SITESkrion2004-06-081-2/+1
| | | | | PR: ports/67690 Submitted by: Roman Neuhauser <neuhauser@chello.cz>
* - Update MASTER_SITESpav2004-06-021-3/+3
| | | | | PR: ports/67472 Submitted by: Roman Neuhauser <neuhauser@chello.cz>
* [PATCH] biology/mopac patchsite fixedwin2004-06-011-1/+1
| | | | | | | | | | | | this is a followup to ports/67432 I completely overlooked the fact that the port was setting PATCH_SITES, here's a fix for that maintainer cc'd PR: ports/67441 Submitted by: Roman Neuhauser <neuhauser@chello.cz>
* [PATCH] biology/mopac distsite fixedwin2004-06-011-1/+1
| | | | | | | connection refused (portsurvey reports timeouts) PR: ports/67432 Submitted by: Roman Neuhauser <neuhauser@chello.cz>
* [PATCH] biology/gff2ps distsite fixedwin2004-06-011-3/+3
| | | | | | | couple distfiles with their respective urls to reduce time and traffic PR: ports/67430 Submitted by: Roman Neuhauser <neuhauser@chello.cz>
* - Update WWWpav2004-05-291-1/+1
|
* - Fix MASTER_SITESkrion2004-05-231-4/+1
| | | | | PR: ports/67045 Submitted by: Stefan Walter <sw@gegenunendlich.de>
* - Remove long time unresponsive MASTER_SITEpav2004-05-221-1/+0
| | | | | PR: ports/67016 Submitted by: Roman Neuhauser <neuhauser@chello.cz>
* - Update MASTER_SITES and WWW: linekrion2004-05-222-2/+2
| | | | | PR: ports/67015 Submitted by: Roman Neuhauser <neuhauser@chello.cz>
* Add forgotten patches...thierry2004-05-214-2/+62
|
* BROKEN: Broken pkg-plistkris2004-05-211-0/+2
|
* unbreak, only minor changes in the distfiles (see PR)eik2004-05-182-8/+7
| | | | | | | | Since the distfile has no version number, put it in DIST_SUBDIR= ${PORTNAME}-${PORTVERSION} PR: 66817 Submitted by: Fernan Aguero <fernan@iib.unsam.edu.ar> (new maintainer)
* Add a missing BUILD_DEPENDS.thierry2004-05-111-0/+1
| | | | Reported by: Kris.
* Upgrade to 2.0b7 and unbreak.thierry2004-05-107-113/+128
|
* Fix MASTER_SITESmarkus2004-05-091-1/+1
|
* Make portlint happy by replacing space to tabmaho2004-05-062-4/+4
| | | | | PR: 65409 Submitted by: trevor
* - update to 4.5.3petef2004-05-026-17/+235
| | | | | | | - remove version from pkg-descr PR: 65972 Submitted by: maintainer
* - Honor CFLAGSkrion2004-04-161-1/+1
| | | | | PR: ports/65599 Submitted by: michael johnson <ahze at ahze dot net>
* BROKEN: Checksum mismatchkris2004-04-121-0/+2
|
* Mark this port BROKEN with gtk+-2.4.marcus2004-04-111-0/+2
| | | | Reported by: bento via kris
* Tidy up whitespace.trevor2004-04-102-6/+6
|
* Trim whitespace.trevor2004-04-102-66/+66
|
* Add openbabel dependency (bento log forwarded by kris).trevor2004-04-091-0/+2
|
* Update to 1.7.8.trevor2004-04-073-16/+16
|
* After patching, remove the carriage-return characters from povchem.ctrevor2004-04-071-0/+2
| | | | | | because they because they choke GCC 2.95.4. noticed by: kris
* Chase home page.trevor2004-04-071-1/+1
|
* Fix build with gtk 2.4.adamw2004-04-051-1/+6
|
* Chase the glib20 update, and bump all affected ports' PORTREVISIONs.marcus2004-04-054-3/+4
|
OpenPOWER on IntegriCloud