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* - Update to 1.07miwi2008-03-122-4/+4
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* Fix pkg-plistmaho2008-03-101-0/+142
| | | | Submitted by: pav
* Update to 1.0r2.maho2008-03-076-955/+636
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* - File was rerolled for a small bugfix.miwi2008-02-273-3/+16
| | | | Submitted by: pointyhat via pav/erwin
* - Restore clustalw symlink, other ports rely on itpav2008-02-261-1/+5
| | | | | Reported by: pointyhat Pointy hat to: pav
* - Update to 2.4.3miwi2008-02-252-4/+4
| | | | Submitted by: Ports Fury
* - Update to 2.0.3pav2008-02-256-61/+8
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* Umark BROKEN, stale distfile removed from ftp-master.erwin2008-01-271-2/+0
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* - Update to 2.4.2 (fix fetch problems)miwi2008-01-252-4/+4
| | | | Submitted by: pointyhat via pav
* Mark BROKEN: does not fetcherwin2008-01-251-0/+2
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* - Update to 2.4.1miwi2008-01-204-15/+46
| | | | | PR: 119719 Submitted by: KATO Tsuguru <tkato432@yahoo.com>
* Fix build on !i386arved2008-01-041-9/+5
| | | | | | PR: 118922 Submitted by: Motomichi Matsuzaki <mzaki@biol.s.u-tokyo.ac.jp> Approved by: Fernan Aguero <fernan@iib.unsam.edu.ar>
* - Update to 2.0pav2007-12-1515-406/+60
| | | | | PR: ports/117713 Submitted by: Motomichi Matsuzaki <mzaki@e-mail.ne.jp>
* MrBayes is a program for the Bayesian estimation of phylogeny.miwi2007-12-155-0/+60
| | | | | | | | | | | | | | | Bayesian inference of phylogeny is based upon a quantity called the posterior probability distribution of trees, which is the probability of a tree conditioned on the observations. The conditioning is accomplished using Bayes's theorem. The posterior probability distribution of trees is impossible to calculate analytically; instead, MrBayes uses a simulation technique called Markov chain Monte Carlo (or MCMC) to approximate the posterior probabilities of trees. WWW: http://mrbayes.csit.fsu.edu/ PR: ports/118542 Submitted by: mzaki at biol.s.u-tokyo.ac.jp
* MUMmer is a modular system for the rapid whole genome alignment of finishedmiwi2007-12-145-0/+79
| | | | | | | | | | | or draft sequence. This package provides an efficient suffix tree library, seed-and-extend alignment, SNP detection, repeat detection, and visualization tools. WWW: http://mummer.sourceforge.net/ PR: ports/118142 Submitted by: Tony Maher
* - Mark BROKEN outside i386: does not compilepav2007-12-041-0/+4
| | | | | Reported by: pointyhat Approved by: portmgr (hat)
* - Allow build with AMD64miwi2007-10-282-2/+5
| | | | | | | | - Fix pkg-plist - Bump PORTREVISION PR: 117435 Submitted by: "M. L. Dodson" <mldodson@comcast.net> (maintainer)
* - Update to 1.1.0clsung2007-10-243-74/+86
| | | | | | PR: ports/117369 Submitted by: Motomichi Matsuzaki <mzaki_AT_e-mail dot ne dot jp> Approved by: maintainer (Mauricio Herrera Cuadra)
* - Update to 2.1.2bmiwi2007-10-235-37/+20
| | | | | PR: 117336 Submitted by: KATO Tsuguru <tkato432@yahoo.com>
* Migration from bison 1.x to 2.xade2007-10-171-1/+2
| | | | | PR: 117086 Tested by: -exp runs
* - Update to 2.1miwi2007-10-087-18/+196
| | | | | PR: 116017 Submitted by: KATO Tsuguru <tkato432@yahoo.com>
* - Sort category Makefilessat2007-10-051-2/+2
| | | | | Inspired by: Jason Harris <jharris@widomaker.com> Howto: http://twiki.cenkes.org/Cenkes/SortingCategoryMakefiles
* - Fix typo in WWWpav2007-10-041-1/+1
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* Remove always-false/true conditions based on OSVERSION 500000edwin2007-10-041-1/+1
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* Mark as broken on gcc4.2.linimon2007-10-021-1/+7
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* Mark as broken with gcc4.2.linimon2007-10-021-0/+4
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* biology/linux-foldingathome needs to run as root?edwin2007-09-233-6/+8
| | | | | | | | | | | | | | | | | | | | | | | | | | (also: update to 5.0.4) Upon installing FoldingAtHome I ran the software from a user account only to find that I was stuck in a loop of trying to enter configuration options. Shortly thereafter I realized that it was trying to write to /usr/local/share/foldingathome, and therefore requires being run as root to write there unless one changes permissions there. Seing as this isn't installed with a startup script for daemonization, and running as root seems a little excessive for this application, should this be adapted to run from a user account or set up to be able to start at boot? And from maintainer: This diff updates the port to version 5.04, and adds support to running as normal user using ~/.fah directory. PR: ports/113335 Submitted by: James Snyder <jbsnyder@fanplastic.org> Approved by: maintainer
* Welcome bsd.perl.mk. Add support for constructs such as USE_PERL5=5.8.0+.linimon2007-09-087-39/+5
| | | | | | | | Drop support for antique perl. Work done by: gabor Sponsored by: Google Summer of Code 2007 Hat: portmgr
* - Update to 1.06miwi2007-09-072-12/+5
| | | | - Remove 4.X cruft
* - Update to version 2.3itetcu2007-09-034-46/+57
| | | | | PR: ports/116019 Submitted by: KATO Tsuguru
* - Chase x11-toolkits/pmw renamed to x11-toolkits/py-Pmwrafan2007-09-021-2/+2
| | | | PR: 115302
* Replace IGNORE with ONLY_FOR_ARCHS for this binary port.kris2007-08-091-9/+2
| | | | Submitted by: maintainer
* Fix pkg-plistlme2007-08-021-0/+1
| | | | | Spotted by: pav Approved by: miwi (mentor)
* Update to 2.0.10lme2007-07-314-22/+22
| | | | | | PR: 114738 Submitted by: KATO Tsuguru <tkato432 (AT) yahoo.com> Approved by: miwi (mentor)
* - cleanup after gnustep-make-2.0.1dinoex2007-07-221-1/+0
| | | | Approved by: maintainer (implicit)
* Now we use USE_FORTRAN=yes to use FORTRAN compiler.maho2007-07-141-7/+2
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* Now we use USE_FORTRAN=yes to use FORTRAN compiler.maho2007-07-121-4/+2
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* Now we use USE_FORTRAN=yes to use FORTRAN compiler.maho2007-07-122-9/+2
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* Now we use USE_FORTRAN=yes to use FORTRAN compiler.maho2007-07-121-5/+1
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* - Runs on 7.0-CURRENT with compat6xpav2007-07-081-0/+4
| | | | Reported by: Rene Ladan <r.c.ladan@gmail.com>
* - Update to version 9rafan2007-07-083-1313/+1505
| | | | | | | | | - Don't install CVS directories which are going to be removed in next release PR: ports/113831 Submitted by: Thomas Abthorpe <thomas at goodking.ca> Approved by: maintainer timeout (20 days)
* dyeske at yahoo dot com -> dyeske at gmail dot comedwin2007-07-054-6/+6
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* chase math/gsl lib versionijliao2007-06-291-2/+2
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* Bump to v0.16.aaron2007-06-193-6/+53
| | | | | PR: 111719 Submitted by: araujo@bsdmail.org
* - Fix the build with GCC 4.2danfe2007-06-182-7/+32
| | | | | | - Remove BROKEN tag Reported by: pointyhat (logs)
* - Fix typos.miwi2007-05-311-3/+3
| | | | Reported by: stas@
* - Update to 1.43miwi2007-05-304-92/+167
| | | | | | PR: 111817 Submitted by: "P.BandieraPaiva" <paiva@unifesp.br> Approved by: maintainer
* BROKEN: Unfetchablekris2007-05-261-0/+2
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* BROKEN with gcc 4.2kris2007-05-261-1/+7
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* - update for gnustep-make-2.0.0dinoex2007-05-252-71/+79
| | | | Approved by: gurkan (maintainer)
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