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* For EMBOSS:thierry2006-03-3117-1270/+7582
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | This patch brings EMBOSS up to date with the current version. i. The patches included in files/ are bugfixes for files in EMBOSS-3.0.0 that appeared after the release. They are documented in ftp://emboss.open-bio.org/pub/EMBOSS/fixes/README This is just 'for the record' so that we remember to remove these patches in the next update. ii. EMBOSS is now installed by default in LOCALBASE/emboss This is to avoid CONFLICTS with other ports that install files with the same names. Installing EMBOSS to another PREFIX is also possible. iii. now EMBASSY and EMBOSS both store their distfiles in the same DIST_SUBDIR iv. use built-in PKGMESSAGE and SUB_FILES instead of doing it the old (manual) way For EMBASSY: This update brings embassy in sync with the update of EMBOSS to 3.0.0. Things that changed from previous version of the port: i. embassy now installs by default in $LOCALBASE/emboss (the new default PREFIX for emboss as well). ii. changed DIST_SUBDIR so that all the distfiles are put together with emboss. This makes sense(TM) iii. incorporated new EMBASSY apps (this accounts for the changes in OPTIONS and pkg-plist) iv. removed obsoleted patches Finally, I included a sample text that could go in UPDATING. PR: 93053 Submitted by: Fernan Aguero <fernan (at) iib.unsam.edu.ar> (maintainer)
* Conversion to a single libtool environment.ade2006-02-232-1/+5
| | | | Approved by: portmgr (kris)
* Remove CONFLICTS with nss.marcus2006-02-021-1/+1
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* SHA256ifyedwin2006-01-221-0/+1
| | | | Approved by: krion@
* Mass-conversion to the USE_AUTOTOOLS New World Order. The code presentade2005-11-151-1/+1
| | | | | | | | | | | | | | | | | in bsd.autotools.mk essentially makes this a no-op given that all the old variables set a USE_AUTOTOOLS_COMPAT variable, which is parsed in exactly the same way as USE_AUTOTOOLS itself. Moreover, USE_AUTOTOOLS has already been extensively tested by the GNOME team -- all GNOME 2.12.x ports use it. Preliminary documentation can be found at: http://people.FreeBSD.org/~ade/autotools.txt which is in the process of being SGMLized before introduction into the Porters Handbook. Light blue touch-paper. Run.
* - Update to 2.10.0pav2005-05-293-995/+1221
| | | | | | PR: ports/81579 Submitted by: "Choe, Cheng-Dae" <whitekid@gmail.com> Approved by: Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
* - Add (or fix) CONFLICTS line. The ports install bin/digest.sem2005-02-111-0/+2
| | | | Approved by: portmgr (krion)
* - Update to 2.9.0sem2004-11-269-1812/+1632
| | | | | | | - Pass maintainership to submitter PR: ports/74333 Submitted by: Fernan Aguero <fernan(at)iib.unsam.edu.ar>
* Add missing fileskris2004-11-261-0/+11
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* With portmgr hat on, reset inactive maintainer.linimon2004-11-201-1/+1
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* Fix MASTER_SITES:vs2004-06-231-2/+2
| | | | | | | | | - add trailing slash - ftp.ebi.ac.uk only has 2.8.0 PR: ports/67427 Submitted by: Roman Neuhauser Approved by: maintainer timeout
* Bump PORTREVISION on all ports that depend on gettext to aid with upgrading.marcus2004-02-041-1/+1
| | | | (Part 2)
* Define USE_PERL5_BUILD, not erroneous USE_PERL.trevor2003-11-201-1/+1
| | | | Submitted by: Oliver Eikemeier
* Define USE_PERL to make Perl available for (mostly deprecated)trevor2003-11-201-0/+1
| | | | "perl -pi -e" construction.
* o Main modificationnork2003-08-181-6/+4
| | | | | | | | | | | | | | | | | | graphics/gd(based on 1.8.4) -> graphics/gd1 graphics/gd2(based on 2.0.15) -> graphics/gd graphics/p5-GD(based on 1.41) -> graphics/p5-GD1 graphics/p5-GD2(based on 2.07) -> graphics/p5-GD japanese/gd -> japanese/gd1 japanese/gd2 -> japanese/gd o Include some feature WITH_XPM(w/, w/o WITHOUT_X11) o Chase this modification o Fix build error [1] PR: ports/54540 Submitted by: Ports Fury Approved by: maintainer (blanket) Reported by: bento via kris [1]
* BROKEN: Checksum mismatchkris2003-08-071-0/+2
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* o Change library name from libgd to libgd1.nork2003-07-111-1/+2
| | | | | | | | | o Do not install everything except headers and libraries (to avoid conflicting with graphics/gd2) o Fix dependency on new libgd1(for many ports). PR: ports/54100 Submitted by: Ports Fury
* Clear moonlight beckons.ade2003-03-072-1/+1
| | | | | | | Requiem mors pacem pkg-comment, And be calm ports tree. E Nomini Patri, E Fili, E Spiritu Sancti.
* - Unbreak fetching of distfiles. (Needs update as soon as freeze is over.)wjv2002-09-272-9/+7
| | | | | Submitted by: kris, bento Approved by: Implicitly by first rule of ports freeze, I hope!
* BROKEN: Does not fetchkris2002-09-201-0/+2
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* - Update to version 2.4.1wjv2002-07-054-111/+183
| | | | | | | | - Unmark BROKEN - Start adding support for Jemboss Java-based GUI (not active yet) PR: 40198 ; many private requests Submitted by: Tilman Linneweh <tilman@arved.de> (2.4.1 update)
* BROKEN: incorrect checksumskris2002-05-171-0/+2
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* Add USE_SUBMAKE, where it might be necessary.sobomax2002-03-251-0/+1
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* - Update to version 2.2.0wjv2002-01-183-15/+335
| | | | | | | | | - Update included EMBASSY package EMNU - Fix a long-standing bug in Makefile that would preclude PKGMESSAGE from being generated properly - Consider this an interim update merely to track the latest version - more work is required to activate the newly included "Jemboss" Java GUI interface
* - Update port to version 2.0.1wjv2001-08-035-24/+110
| | | | - Add two new EMBASSY applications, MEME and HMMER.
* Remove obsolete pointer to online documentation.wjv2001-07-111-4/+2
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* Update package's URL; my email address.wjv2001-07-112-3/+3
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* Updating my email address in my remaining ports.wjv2001-06-271-1/+1
| | | | Prompted by: vanilla
* Update to 1.13.3; remove bogus file.wjv2001-06-154-71/+9
| | | | | PR: 28119 Reviewed by: nbm
* Update to version 1.13.1kevlo2001-05-305-42/+240
| | | | | PR: 27768 Submitted by: MAINTAINER
* Update the EMBOSS suite (biology/emboss) to version 1.12.0jeh2001-05-073-138/+25
| | | | | PR: 27179 Submitted by: Johann Visagie <johann@egenetics.com> MAINTAINER
* Update the EMBOSS suite to v1.11.0nbm2001-03-123-7/+12
| | | | | PR: 25728 Submitted by: johann@egenetics.com
* Update to version 1.10.1kevlo2001-02-283-8/+7
| | | | | PR: 25449 Submitted by: maintainer
* Update to version 1.10.0kevlo2001-02-205-24/+51
| | | | | PR: 25228 Submitted by: MAINTAINER
* Chase graphics/gd's shlib version bump.knu2001-02-121-1/+2
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* - Update EMBOSS (biology/emboss) from 1.9.0 to 1.9.1kevlo2001-01-2910-77/+118
| | | | | | | | - Update the EMBASSY package EMNU from 1.0.2 to 1.0.3 - Merged the four pkg-plist* files into one PR: 24717 Submitted by: MAINTAINER
* Upgrade to version 1.9.0kevlo2001-01-246-13/+47
| | | | | PR: 24597 Submitted by: MAINTAINER
* Update distfiles' checksums after the distfiles have been rerolled yetroam2000-12-042-4/+5
| | | | | | | again without changing names or versions. Also add a new MASTER_SITE. PR: 23262 Submitted by: Johann Visagie <johann@egenetics.com>
* Distfile tarballs were rerolled without notice due to a minor bug.roam2000-11-301-4/+4
| | | | | PR: 23193 Submitted by: Johann Visagie <johann@egenetics.com>
* - Update port biology/emboss from 1.7.0 to 1.8.0jeh2000-11-284-17/+124
| | | | | PR: 23130 Submitted by: Johann Visagie <johann@egenetics.com> MAINTAINER
* Make nolonger support :U. Fix to compensate for that.jeh2000-11-191-3/+6
| | | | | Submitted by: fenner Approved by: MAINTAINER
* - This is a fairly extensive rework of this port.jeh2000-11-133-0/+56
| | | | | | | | | | | - "EMBASSY" applications are third party tools which have been adapted to function as part of EMBOSS, but which are not included with the base EMBOSS distribution for licensing or other reasons. This new version of the EMBOSS port now contains the three current EMBASSY applications as well, and during installation the user is presented with a dialog(1) menu to PR: 22818 Submitted by: Johann Visagie <johann@egenetics.com> MAINTAINER
* - This is a fairly extensive rework of this port.jeh2000-11-134-5/+150
| | | | | | | | | | | | - "EMBASSY" applications are third party tools which have been adapted to function as part of EMBOSS, but which are not included with the base EMBOSS distribution for licensing or other reasons. This new version of the EMBOSS port now contains the three current EMBASSY applications as well, and during installation the user is presented with a dialog(1) menu to choose which of these should be isntalled. PR: 22818 Submitted by: Johann Visagie <johann@egenetics.com> MAINTAINER
* Make portlint happy, remove a spacejeh2000-11-011-1/+1
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* Update to version 1.7.0jeh2000-11-013-2/+11
| | | | | PR: 22474 Submitted by: Johann Visagie <johann@egenetics.com> MAINTAINER
* - Update to 1.6.0kevlo2000-10-103-363/+372
| | | | | | | - Reorder packing list PR: 21857 Submitted by: MAINTAINER
* Add USE_XLIBkris2000-09-221-0/+1
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* Upgrade to 1.5.0nbm2000-09-084-66/+113
| | | | | PR: 21108 Submitted by: Johann Visagie <johann@egenetics.com>
* Update to emboss 1.4.0.nbm2000-09-074-52/+83
| | | | | PR: ports/20898 Submitted by: Johann Visagie <johann@egenetics.com>
* USE_LIBTOOL implies GNU_CONFIGURE, so remove redundant GNU_CONFIGURE lines.sobomax2000-08-211-1/+0
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