Update to version 4.1r3.

PR:		14717
Submitted by:	maintainer

48 files changed, 1317 insertions, 153 deletions

diff --git a/science/hdf/Makefile b/science/hdf/Makefile
index 7d13c14..bd569b4 100644
--- a/science/hdf/Makefile
+++ b/science/hdf/Makefile
@@ -6,63 +6,32 @@
 # $FreeBSD$
 #
 
-DISTNAME=	HDF4.1r2
-PKGNAME=	hdf-4.1r2
+DISTNAME=	HDF4.1r3
+PKGNAME=	hdf-4.1r3
 CATEGORIES=	graphics
-MASTER_SITES=	ftp://ftp.ncsa.uiuc.edu/HDF/HDF4.1r2/tar/
+MASTER_SITES=	ftp://ftp.ncsa.uiuc.edu/HDF/HDF/HDF4.1r3/tar/
 
 MAINTAINER=	mi@aldan.algebra.com
 
 LIB_DEPENDS=	jpeg.9:${PORTSDIR}/graphics/jpeg
 
 MAN1=		hdf.1 hdfunpac.1 ncdump.1 ncgen.1
+MAN3=		gr_chunk.3
+MANCOMPRESSED=	maybe
 
-GNU_CONFIGURE=	yes
-FC?=		f77 # Can also be g77 for the newer one
-MAKE_FLAGS=	CC="$(CC)" FC="${FC}" -f
-MAKE_ENV=	pwrkdir=${WRKDIR}
-#"wrkdir" doesn't work for some reason in the above
+MAKE_ARGS=	PREFIX="${PREFIX}" -j 2
 
-# This will create dummy Makefiles and some links in the jpeg and libz
-# subdirectories. This way, we do not need to hunt all the dependencies
-# out. Shame on the lib's developers, though, this can not be done through
-# `configure'.	-mi
-pre-build:
-	${AR} -r ${WRKDIR}/libz.a /dev/null
-	${RANLIB} ${WRKDIR}/libz.a
-	test -d ${WRKSRC}/hdf/jpeg.came-with-HDF || \
-		${MV} -f ${WRKSRC}/hdf/jpeg ${WRKSRC}/hdf/jpeg.came-with-HDF
-	-${MKDIR} ${WRKSRC}/hdf/jpeg
-	${RM} -f ${WRKSRC}/hdf/jpeg/Makefile
-	${ECHO} #Phony makefile > ${WRKSRC}/hdf/jpeg/Makefile
-	${ECHO} >> ${WRKSRC}/hdf/jpeg/Makefile
-	${ECHO} libjpeg.a: >> ${WRKSRC}/hdf/jpeg/Makefile
-	printf '\t@${ECHO} Using the already installed JPEG library\n' \
-		>> ${WRKSRC}/hdf/jpeg/Makefile
-	printf '\nclean:\n\ttrue\n' >> ${WRKSRC}/hdf/jpeg/Makefile
-	printf '\ninstall-lib:\n\ttrue\n' >> ${WRKSRC}/hdf/jpeg/Makefile
-	printf '\ninstall:\n\ttrue\n' >> ${WRKSRC}/hdf/jpeg/Makefile
-	-${LN} -s ${PREFIX}/lib/libjpeg* ${WRKSRC}/hdf/jpeg/
-	-${LN} -s ${PREFIX}/include/j*.h ${WRKSRC}/hdf/jpeg/
-	test -d ${WRKSRC}/hdf/zlib.came-with-HDF || \
-		${MV} -f ${WRKSRC}/hdf/zlib ${WRKSRC}/hdf/zlib.came-with-HDF
-	-${MKDIR} ${WRKSRC}/hdf/zlib
-	${RM} -f ${WRKSRC}/hdf/zlib/Makefile
-	${ECHO} #Phony makefile > ${WRKSRC}/hdf/zlib/Makefile
-	${ECHO} >> ${WRKSRC}/hdf/zlib/Makefile
-	${ECHO} libzlib.a: >> ${WRKSRC}/hdf/zlib/Makefile
-	printf '\t@${ECHO} Using the already installed ZLIB library\n' \
-		>> ${WRKSRC}/hdf/zlib/Makefile
-	printf '\nclean:\n\ttrue\n' >> ${WRKSRC}/hdf/zlib/Makefile
-	printf '\ninstall-lib:\n\ttrue\n' >> ${WRKSRC}/hdf/zlib/Makefile
-	printf '\ninstall:\n\ttrue\n' >> ${WRKSRC}/hdf/zlib/Makefile
-	-${LN} -s /usr/lib/${BINFORMAT}/libz* ${WRKSRC}/hdf/zlib/
-	-${LN} -s /usr/include/zconf.h /usr/include/zlib.h ${WRKSRC}/hdf/zlib/
+post-patch:
+	${RM} -rf ${WRKSRC}/hdf/jpeg
+	${RM} -rf ${WRKSRC}/hdf/zlib
 
-post-install:
-	@for binary in `${GREP} ^bin/ ${PLIST}` ; do strip ${PREFIX}/$$binary; done
+do-configure:
+	${CP} -rp ${FILESDIR}/Makefile ${FILESDIR}/hdf \
+		${FILESDIR}/mfhdf ${FILESDIR}/man ${WRKSRC}
+	${LN} -s config/netcdf-fbsd.h ${WRKSRC}/mfhdf/libsrc/netcdf.h
+	${LN} -s netcdf-fbsd.inc ${WRKSRC}/mfhdf/fortran/config/netcdf.inc
 
-test:
-	cd ${WRKSRC}; make ${MAKE_FLAGS} ${MAKEFILE} test
+test: build
+	cd ${WRKSRC}; ${MAKE} test
 
 .include <bsd.port.mk>
diff --git a/science/hdf/distinfo b/science/hdf/distinfo
index da49d27..6e22d24 100644
--- a/science/hdf/distinfo
+++ b/science/hdf/distinfo
@@ -1 +1 @@
-MD5 (HDF4.1r2.tar.gz) = 52814865529791e3a39637fd851a7143
+MD5 (HDF4.1r3.tar.gz) = 975f84ad8c5910841995c9d339fbd8bb
diff --git a/science/hdf/files/Makefile b/science/hdf/files/Makefile
new file mode 100644
index 0000000..0dc23c1
--- /dev/null
+++ b/science/hdf/files/Makefile
@@ -0,0 +1,16 @@
+# $FreeBSD$
+
+SUBDIR	 = hdf mfhdf man
+#PREFIX	?= /usr/local
+LIBDIR	?= ${PREFIX}/lib
+BINDIR	?= ${PREFIX}/bin
+
+.MAKEFLAGS: PREFIX=${PREFIX} LIBDIR=${LIBDIR} BINDIR=${BINDIR}
+
+test: all
+	# testing in hdf
+	@cd hdf && ${MAKE} hdf-test
+	# testing in mfhdf
+	@cd mfhdf && ${MAKE} test
+
+.include <bsd.subdir.mk>
diff --git a/science/hdf/files/hdf/Makefile b/science/hdf/files/hdf/Makefile
new file mode 100644
index 0000000..1f9663c
--- /dev/null
+++ b/science/hdf/files/hdf/Makefile
@@ -0,0 +1,9 @@
+# $FreeBSD$
+
+SUBDIR	 = src util test
+
+hdf-test: all
+	cd util && ${MAKE} test
+	cd test && ${MAKE} test
+
+.include <bsd.subdir.mk>
diff --git a/science/hdf/files/hdf/src/Makefile b/science/hdf/files/hdf/src/Makefile
new file mode 100644
index 0000000..5dde282
--- /dev/null
+++ b/science/hdf/files/hdf/src/Makefile
@@ -0,0 +1,54 @@
+# $FreeBSD$
+
+LIB=df
+
+# uncomment the line below to avoid building static libraries
+#INTERNALLIB=YES
+LIBDIR=${PREFIX}/lib
+
+SHLIB_MAJOR=1
+SHLIB_MINOR=0
+
+SRCS=atom.c  bitvect.c  cdeflate.c  cnbit.c  cnone.c  crle.c  cskphuff.c \
+	df24.c  df24f.c dfan.c  dfanf.c dfcomp.c  dfconv.c dff.c  dfgr.c \
+	dfgroup.c  dfimcomp.c  dfjpeg.c  dfkconv.c  dfkcray.c  dfkfuji.c \
+	dfknat.c dfkswap.c dfkvms.c dfp.c  dfpf.c dfr8.c dfr8f.c dfrle.c \
+	dfsd.c dfsdf.c dfstubs.c dfufp2i.c dfunjpeg.c dfutil.c dfutilf.c \
+	dir_mac.c  dynarray.c   glist.c  hbitio.c   hblocks.c  hbuffer.c \
+	hchunks.c hcomp.c hcompri.c  hdfalloc.c herr.c herrf.c hextelt.c \
+	hfile.c hfiledd.c hfilef.c hkit.c linklist.c mcache.c \
+	mfan.c mfanf.c  mfgr.c mfgrf.c mstdio.c tbbt.c  vattr.c vattrf.c \
+	vconv.c  vg.c vgf.c  vgp.c  vhi.c vio.c  vparse.c vrw.c  vsfld.c \
+	df24ff.f  dfanff.f dfff.f  dfpff.f dfr8ff.f  dfsdff.f dfufp2if.f \
+	hfileff.f mfgrff.f vattrff.f vgff.f
+
+CFLAGS	+= -I${PREFIX}/include
+FFLAGS	+= ${CFLAGS}
+
+.if !defined(OSVERSION)
+.if exists(/sbin/sysctl)
+OSVERSION!=	/sbin/sysctl -n kern.osreldate
+.else
+OSVERSION!=	/usr/sbin/sysctl -n kern.osreldate
+.endif
+.endif
+
+.if ${OSVERSION} >= 400004
+LDADD	+= -L${PREFIX}/lib -ljpeg -lg2c -lz -lm
+.else
+LDADD	+= -L${PREFIX}/lib -ljpeg -lf2c -lz
+.endif
+
+afterinstall:
+	install -c -o root -g wheel -m 444 \
+		atom.h  bitvect.h  cdeflate.h   cnbit.h  cnone.h  crle.h \
+		cskphuff.h df.h dfan.h  dfconvrt.h dfgr.h dfi.h dfivms.h \
+		dfrig.h dfsd.h dfstubs.h  dfufp2i.h dir_mac.h dynarray.h \
+		glist.h  hbitio.h  hchunks.h  hcomp.h  hcompi.h  hconv.h \
+		hdf.h hdfi.h  herr.h hfile.h hkit.h  hlimits.h hntdefs.h \
+		hproto.h hqueue.h htags.h linklist.h maldebug.h mcache.h \
+		mfan.h mfgr.h mstdio.h patchlevel.h sys_dir_mac.h tbbt.h \
+		trace.h vattr.h vg.h vgint.h hdf.inc dffunc.inc \
+			${PREFIX}/include
+
+.include <bsd.lib.mk>
diff --git a/science/hdf/files/hdf/test/Makefile b/science/hdf/files/hdf/test/Makefile
new file mode 100644
index 0000000..3a3c8ca
--- /dev/null
+++ b/science/hdf/files/hdf/test/Makefile
@@ -0,0 +1,68 @@
+# $FreeBSD$
+
+CSRCS= 	rig.c sdstr.c blocks.c an.c anfile.c extelt.c file.c file1.c vers.c \
+	sdmms.c sdnmms.c slab.c litend.c tvset.c comp.c bitio.c tree.c macros.c \
+	conv.c nbit.c man.c mgr.c testhdf.c tbv.c tvsfpack.c chunks.c tvattr.c \
+    buffer.c
+
+COBJS=	${CSRCS:S/.c/.o/g}
+
+FSRCS= fortest.c fortestF.f forsupff.f forsupf.c \
+	manf.f mgrf.f slabwf.f t24f.f tanf.f tanfilef.f tpf.f tr8f.f \
+	tsdmmsf.f tsdnmmsf.f tsdnntf.f tsdntf.f tsdstrf.f tstubsf.f \
+        tvsetf.f, tvattrf.f
+
+FOBJS = fortestF.o forsupff.o forsupf.o \
+	manf.o mgrf.o slabwf.o t24f.o tanf.o tanfilef.o tpf.o tr8f.o \
+	tsdmmsf.o tsdnmmsf.o tsdnntf.o tsdntf.o tsdstrf.o tstubsf.o  \
+        tvsetf.o tvattrf.o
+
+#CFORSUPSRCS = forsupf.c
+
+HDFLIB	 = ${.CURDIR}/../src
+CFLAGS	+= -I${HDFLIB}
+FFLAGS	+= ${CFLAGS} -Nn802 -Nx400
+
+FTESTS = fortest fortestF
+
+all: testhdf $(FTESTS) gentest
+
+#CFORSUPOBJS = forsupf.o
+
+TESTF = fortest.o
+
+# directory used by extelt test.
+TESTDIR = testdir
+
+$(FOBJS): fortest.inc
+
+test: atest-hdf
+
+atest-hdf: testhdf $(FTESTS)
+	-rm -f *.hdf 
+	env LD_LIBRARY_PATH=${.CURDIR}/../src ./testhdf
+	-rm -f *.hdf 
+	env LD_LIBRARY_PATH=${.CURDIR}/../src ./fortest
+
+testhdf: $(COBJS) $(HDFLIB)/libdf.so
+	$(CC) -o testhdf $(COBJS) $(HDFLIB)/libdf.so -lm
+	test -d $(TESTDIR) || mkdir $(TESTDIR)
+
+fortestF: $(FOBJS) $(HDFLIB)/libdf.so
+	$(FC) $(FFLAGS) -o $@ $(FOBJS) $(HDFLIB)/libdf.so -lm
+
+fortest: $(HDFLIB)/libdf.so fortest.c $(CHDRS)
+	$(CC) $(CFLAGS) -o fortest fortest.c $(HDFLIB)/libdf.so -lm
+
+gentest: gentest.c $(HDFLIB)/libdf.so
+	$(CC) $(CFLAGS) gentest.c -o gentest $(HDFLIB)/libdf.so -lm
+
+clean: 
+	-rm -f $(COBJS) testhdf $(FOBJS) $(FTESTS) \
+	core *.hdf ptesthdf qtesthdf gentest *.o fortest.arg $(TESTDIR)/* \
+	.depend
+
+depend: 
+	mkdep ${CFLAGS} ${CSRCS}
+
+install:
diff --git a/science/hdf/files/hdf/util/Makefile b/science/hdf/files/hdf/util/Makefile
new file mode 100644
index 0000000..6d4ccae
--- /dev/null
+++ b/science/hdf/files/hdf/util/Makefile
@@ -0,0 +1,30 @@
+# $FreeBSD$
+
+UTILS	 = hdf24to8 hdfcomp hdfls hdfpack hdftopal hdftor8 paltohdf \
+        r8tohdf ristosds  vmake vshow hdf8to24 hdf2jpeg jpeg2hdf fp2hdf \
+	hdfunpac vcompat
+
+all: ${UTILS} hdfed
+
+HEOBJ = he_main.o he_cntrl.o he_disp.o he_file.o
+
+#CFLAGS	+= -I${PREFIX}/include -I${.CURDIR}/../src/
+CFLAGS	+=  -I${.CURDIR}/../src/
+#LDFLAGS	+= -L${PREFIX}/lib -ljpeg -L${.CURDIR}/../src/ -ldf -lz
+LDFLAGS	+= -L${.CURDIR}/../src/ -ldf
+
+hdfed: he.h he_proto.h $(HEOBJ)
+	$(CC) $(HEOBJ) $(LDFLAGS) -o hdfed
+
+test: all fptest
+	env LD_LIBRARY_PATH=${.CURDIR}/../src ./testutil.sh
+
+clean:
+	-rm -f *.o $(UTILS) hdfed fptest
+	-rm -f o* ctx* cb* fptestf .depend
+
+depend:
+	mkdep ${CFLAGS} ${UTILS:S/$/.c/g} ${HEOBJ:S/.o/.c/g}
+
+install: all
+	install -c -s -o root -g wheel -m 555 ${UTILS} hdfed ${BINDIR}
diff --git a/science/hdf/files/man/Makefile b/science/hdf/files/man/Makefile
new file mode 100644
index 0000000..eeea6c1
--- /dev/null
+++ b/science/hdf/files/man/Makefile
@@ -0,0 +1,17 @@
+# $FreeBSD$
+
+MANDIR	=	${PREFIX}/man/man
+
+MAN1	=	hdf.1 hdfunpac.1
+MAN3	=	gr_chunk.3
+
+.include <bsd.man.mk>
+
+install: all-man maninstall
+
+clean:
+	-rm -f *.gz
+
+all: all-man
+
+depend:
diff --git a/science/hdf/files/mfhdf/Makefile b/science/hdf/files/mfhdf/Makefile
new file mode 100644
index 0000000..202766e
--- /dev/null
+++ b/science/hdf/files/mfhdf/Makefile
@@ -0,0 +1,13 @@
+# $FreeBSD$
+
+SUBDIR		= fortran libsrc ncgen ncdump nctest dumper
+
+.include <bsd.subdir.mk>
+
+test: all
+	@for d in ${SUBDIR} ; do \
+		echo "===> testing in $$d"; \
+		cd $$d; \
+		${MAKE} test; \
+		cd ..; \
+	done
diff --git a/science/hdf/files/mfhdf/dumper/Makefile b/science/hdf/files/mfhdf/dumper/Makefile
new file mode 100644
index 0000000..1bd8b3d
--- /dev/null
+++ b/science/hdf/files/mfhdf/dumper/Makefile
@@ -0,0 +1,13 @@
+# $FreeBSD$
+
+PROG		 = hdp
+NOMAN		 = 1
+LDFLAGS		+= -L${.CURDIR}/../libsrc -L${.CURDIR}/../../hdf/src -lmfhdf -ldf
+CFLAGS		+= -I${.CURDIR}/../libsrc -I${.CURDIR}/../../hdf/src
+
+SRCS		=  hdp.c hdp_list.c hdp_sds.c hdp_util.c hdp_vd.c hdp_vg.c hdp_rig.c show.c hdp_dump.c hdp_gr.c
+
+.include <bsd.prog.mk>
+
+test: ${PROG}
+	env LD_LIBRARY_PATH=${.CURDIR}/../libsrc:${.CURDIR}/../../hdf/src sh testhdp.sh
diff --git a/science/hdf/files/mfhdf/fortran/Makefile b/science/hdf/files/mfhdf/fortran/Makefile
new file mode 100644
index 0000000..0357138
--- /dev/null
+++ b/science/hdf/files/mfhdf/fortran/Makefile
@@ -0,0 +1,42 @@
+# $FreeBSD$
+
+.PATH:	${.CURDIR} ${.CURDIR}/config
+
+all:
+
+NOMAN	 =	1
+
+FFLAGS	+=	${CFLAGS} -DNDEBUG -Nn802 -Nx400
+
+LDFLAGS	+=	-L${.CURDIR}/../libsrc -L${.CURDIR}/../../hdf/src -lmfhdf -ldf
+
+afterinstall:
+	install -c -o root -g wheel -m 444 config/netcdf-fbsd.inc \
+		${PREFIX}/include/netcdf.inc
+
+.include <bsd.prog.mk>
+
+ENVIR	 =	env LD_LIBRARY_PATH=${.CURDIR}/../libsrc:${.CURDIR}/../../hdf/src
+
+CLEANFILES+=	hdftest hdftest.o ftest ftest-fbsd.o
+
+config/netcdf.inc:
+	ln -s netcdf-fbsd.inc config/netcdf.inc
+
+ftest:	ftest-fbsd.f config/netcdf.inc
+	${MAKE} PROG=$@ SRCS=ftest-fbsd.f $@
+
+hdftest: hdftest.f
+	${MAKE} PROG=$@ SRCS=hdftest.f $@
+
+test: ftest hdftest
+	mkdir -p testdir
+	# ================================
+	#  netCDF Fortran interface tests
+	# ================================
+	${ENVIR} ./ftest
+	${ENVIR} ./hdftest > hdfout.new
+	@diff -Bb hdfout.new hdftst.sav && \
+		echo "*** HDF-SD Fortran interface tests passed ***" || \
+		(echo "*** HDF-SD Fortran interface tests failed ***"; \
+		echo "The above differences are OK if small")
diff --git a/science/hdf/files/mfhdf/libsrc/Makefile b/science/hdf/files/mfhdf/libsrc/Makefile
new file mode 100644
index 0000000..7ca23f2
--- /dev/null
+++ b/science/hdf/files/mfhdf/libsrc/Makefile
@@ -0,0 +1,43 @@
+# $FreeBSD$
+
+.PATH:  ${.CURDIR} ${.CURDIR}/../fortran/config ${.CURDIR}/../fortran
+
+SRCS		= array.c attr.c cdf.c dim.c file.c iarray.c error.c \
+		  globdef.c putget.c putgetg.c sharray.c string.c var.c \
+		  hdfsds.c mfsd.c nssdc.c xdrposix.c \
+		  jackets-fbsd.c mfsdf.c mfsdff.f
+
+LIB		= mfhdf
+SHLIB_MAJOR	= 2
+SHLIB_MINOR	= 3
+
+LIBDIR		= ${PREFIX}/lib
+
+# uncomment the line below to avoid building static libraries
+#INTERNALLIB	= Yes
+
+CFLAGS	+=	-DNDEBUG -DHDF -I${.CURDIR}/../../hdf/src -I${.CURDIR}
+.if ${MACHINE_ARCH} == "i386"
+CFLAGS	+=	-DSWAP
+.endif
+
+LDADD	+=	-L${.CURDIR}/../../hdf/src -ldf
+LDFLAGS	+=	-L. -l${LIB} ${LDADD}
+
+afterinstall:
+	install -c -o root -g wheel -m 444 hdf2netcdf.h local_nc.h \
+		mfhdf.h netcdf.h ${PREFIX}/include
+
+.include <bsd.lib.mk>
+
+test: ${SHLIB_NAME} cdftest hdftest
+	env LD_LIBRARY_PATH=${.CURDIR}:${.CURDIR}/../../hdf/src ./cdftest > cdfout.new
+	@diff cdfout.new testout.sav && \
+		echo "*** netCDF passes formatted test ***" || \
+                (echo "*** netCDF fails formatted test ***" ; \
+                echo "The above differences are OK if small")
+	env LD_LIBRARY_PATH=${.CURDIR}:${.CURDIR}/../../hdf/src ./hdftest > hdfout.new
+	@diff hdfout.new hdfout.sav && \
+		echo "*** HDF passes formatted test ***" || \
+                (echo "*** HDF fails formatted test ***" ; \
+                echo "The above differences are OK if small")
diff --git a/science/hdf/files/mfhdf/ncdump/Makefile b/science/hdf/files/mfhdf/ncdump/Makefile
new file mode 100644
index 0000000..727b1de
--- /dev/null
+++ b/science/hdf/files/mfhdf/ncdump/Makefile
@@ -0,0 +1,22 @@
+# $FreeBSD$
+
+PROG		 = ncdump
+MANDIR		 = ${PREFIX}/man/man
+
+LDFLAGS		+= -L${.CURDIR}/../libsrc -L${.CURDIR}/../../hdf/src -lmfhdf -ldf
+CFLAGS		+= -I${.CURDIR}/../libsrc
+SRCS		=  ncdump.c vardata.c dumplib.c
+
+.include <bsd.prog.mk>
+
+ENVIR		= env LD_LIBRARY_PATH=${.CURDIR}/../../hdf/src:${.CURDIR}/../libsrc
+NCGEN		= ${.CURDIR}/../ncgen/ncgen
+
+test:		$(PROG) test0.cdl
+	${ENVIR} $(NCGEN) -o test0.nc -n test0.cdl
+	${ENVIR} ./$(PROG) test0.nc > test1.cdl
+	${ENVIR} $(NCGEN) -o test1.nc -n test1.cdl
+	${ENVIR} ./$(PROG) -n test0 test1.nc > test2.cdl
+	@cmp test1.cdl test2.cdl && \
+	    echo "*** $(PROGRAM) test successful ***" ; \
+	    rm test1.cdl test1.nc test2.cdl
diff --git a/science/hdf/files/mfhdf/ncgen/Makefile b/science/hdf/files/mfhdf/ncgen/Makefile
new file mode 100644
index 0000000..d954137
--- /dev/null
+++ b/science/hdf/files/mfhdf/ncgen/Makefile
@@ -0,0 +1,72 @@
+# $FreeBSD$
+
+PROG		 = ncgen
+MANDIR		 = ${PREFIX}/man/man
+LDFLAGS		+= -L${.CURDIR}/../libsrc -L${.CURDIR}/../../hdf/src -lmfhdf -ldf
+CFLAGS		+= -I${.CURDIR}/../libsrc -I${.CURDIR}/../../hdf/src -DNDEBUG
+SRCS		 = main.c generate.c load.c ncgentab.c escapes.c \
+		  getfill.c init.c close.c genlib.c
+
+ENVIR		 = env LD_LIBRARY_PATH=${.CURDIR}/../libsrc:${.CURDIR}/../../hdf/src
+NCDUMP		 = ${.CURDIR}/../ncdump/ncdump
+
+test:           $(PROG) test0.cdl btest ctest ftest
+
+ncgenyy.c: ncgen.l
+	${LEX} ${LFLAGS} ncgen.l
+	mv lex.yy.c ncgenyy.c
+	
+ncgentab.c: ncgenyy.c ncgen.y
+	${YACC} ${YFLAGS} ncgen.y
+	mv y.tab.c ncgentab.c
+	mv y.tab.h ncgentab.h
+
+.include <bsd.prog.mk>
+
+#
+# test "-b" option of ncgen
+#
+btest:		$(PROG) test0.cdl test1.cdl
+	${ENVIR} ./$(PROG) -b test1.cdl
+	${ENVIR} $(NCDUMP) test1.nc > test2.cdl
+	@diff test1.cdl test2.cdl && \
+	    echo "*** $(PROG) -b test successful ***"
+
+#
+# test "-c" option of ncgen
+#
+ctest:		test1.cdl ctest0
+	${ENVIR} ./ctest0		# tests `-c' option, creates ctest0.nc
+	${ENVIR} $(NCDUMP) -n test1 ctest0.nc > ctest1.cdl
+	@diff test1.cdl ctest1.cdl && \
+	    echo "*** $(PROG) -c test successful ***"
+
+ctest0:		ncgen test0.cdl
+	${ENVIR} ./$(PROG) -c -o ctest0.nc test0.cdl > test0.c
+	$(CC) $(CFLAGS) -o $@ test0.c ${LDFLAGS}
+
+#
+# test "-f" option of ncgen
+#
+ftest:	test1.cdl ftest0
+	${ENVIR} ./ftest0
+	${ENVIR} $(NCDUMP) -n test1 ftest0.nc > ftest1.cdl
+	@if diff test1.cdl ftest1.cdl; then \
+		echo "*** ncgen -f test successful ***"; \
+	else \
+		echo "*** ncgen -f test failed " \
+		    "(but roundoff differences are OK) ***"; \
+	fi
+
+ftest0:	$(PROG) test0.cdl netcdf.inc
+	${ENVIR} ./$(PROG) -f -o ftest0.nc test0.cdl > test0.f; \
+	$(FC) $(FFLAGS) ${CFLAGS} -o $@ test0.f ${LDFLAGS}
+
+test1.cdl:	test0.nc
+	${ENVIR} $(NCDUMP) -n test1 test0.nc > $@
+
+test0.nc:	$(PROG) test0.cdl
+	${ENVIR} ./$(PROG) -b -o test0.nc test0.cdl
+
+netcdf.inc:
+	ln -s ../fortran/config/netcdf-fbsd.inc $@
diff --git a/science/hdf/files/mfhdf/nctest/Makefile b/science/hdf/files/mfhdf/nctest/Makefile
new file mode 100644
index 0000000..722d352
--- /dev/null
+++ b/science/hdf/files/mfhdf/nctest/Makefile
@@ -0,0 +1,19 @@
+# $FreeBSD$
+
+PROG		 = nctest
+NOMAN		 = 1
+CFLAGS		+= -I${.CURDIR}/../libsrc
+LDFLAGS		+= -L${.CURDIR}/../libsrc -L${.CURDIR}/../../hdf/src -lmfhdf -ldf
+SRCS		= varget.c vargetg.c varput.c varputg.c vardef.c vartests.c \
+		  vputget.c vputgetg.c driver.c cdftests.c dimtests.c rec.c \
+		  atttests.c misctest.c add.c error.c emalloc.c val.c slabs.c
+
+install:
+
+.include <bsd.prog.mk>
+
+test:		$(PROG)
+	@ echo "==========================="
+	@ echo "netCDF C interface tests"
+	@ echo "==========================="
+	env LD_LIBRARY_PATH=${.CURDIR}/../libsrc:${.CURDIR}/../../hdf/src ./$(PROG)
diff --git a/science/hdf/pkg-plist b/science/hdf/pkg-plist
index f24c36c..3a4df09 100644
--- a/science/hdf/pkg-plist
+++ b/science/hdf/pkg-plist
@@ -20,7 +20,11 @@ bin/vcompat
 bin/vmake
 bin/vshow
 lib/libmfhdf.a
+lib/libmfhdf.so.2
+lib/libmfhdf.so
 lib/libdf.a
+lib/libdf.so
+lib/libdf.so.1
 include/atom.h
 include/bitvect.h
 include/cdeflate.h
@@ -30,7 +34,6 @@ include/crle.h
 include/cskphuff.h
 include/df.h
 include/dfan.h
-include/dffunc.f90
 include/dffunc.inc
 include/dfgr.h
 include/dfi.h
@@ -45,7 +48,6 @@ include/hcomp.h
 include/hcompi.h
 include/hconv.h
 include/hdf.h
-include/hdf.f90
 include/hdf.inc
 include/hdf2netcdf.h
 include/hdfi.h
@@ -63,7 +65,6 @@ include/mfgr.h
 include/mfhdf.h
 include/mstdio.h
 include/netcdf.h
-include/netcdf.f90
 include/netcdf.inc
 include/tbbt.h
 include/vattr.h
diff --git a/science/hdf5-18/Makefile b/science/hdf5-18/Makefile
index 7d13c14..bd569b4 100644
--- a/science/hdf5-18/Makefile
+++ b/science/hdf5-18/Makefile
@@ -6,63 +6,32 @@
 # $FreeBSD$
 #
 
-DISTNAME=	HDF4.1r2
-PKGNAME=	hdf-4.1r2
+DISTNAME=	HDF4.1r3
+PKGNAME=	hdf-4.1r3
 CATEGORIES=	graphics
-MASTER_SITES=	ftp://ftp.ncsa.uiuc.edu/HDF/HDF4.1r2/tar/
+MASTER_SITES=	ftp://ftp.ncsa.uiuc.edu/HDF/HDF/HDF4.1r3/tar/
 
 MAINTAINER=	mi@aldan.algebra.com
 
 LIB_DEPENDS=	jpeg.9:${PORTSDIR}/graphics/jpeg
 
 MAN1=		hdf.1 hdfunpac.1 ncdump.1 ncgen.1
+MAN3=		gr_chunk.3
+MANCOMPRESSED=	maybe
 
-GNU_CONFIGURE=	yes
-FC?=		f77 # Can also be g77 for the newer one
-MAKE_FLAGS=	CC="$(CC)" FC="${FC}" -f
-MAKE_ENV=	pwrkdir=${WRKDIR}
-#"wrkdir" doesn't work for some reason in the above
+MAKE_ARGS=	PREFIX="${PREFIX}" -j 2
 
-# This will create dummy Makefiles and some links in the jpeg and libz
-# subdirectories. This way, we do not need to hunt all the dependencies
-# out. Shame on the lib's developers, though, this can not be done through
-# `configure'.	-mi
-pre-build:
-	${AR} -r ${WRKDIR}/libz.a /dev/null
-	${RANLIB} ${WRKDIR}/libz.a
-	test -d ${WRKSRC}/hdf/jpeg.came-with-HDF || \
-		${MV} -f ${WRKSRC}/hdf/jpeg ${WRKSRC}/hdf/jpeg.came-with-HDF
-	-${MKDIR} ${WRKSRC}/hdf/jpeg
-	${RM} -f ${WRKSRC}/hdf/jpeg/Makefile
-	${ECHO} #Phony makefile > ${WRKSRC}/hdf/jpeg/Makefile
-	${ECHO} >> ${WRKSRC}/hdf/jpeg/Makefile
-	${ECHO} libjpeg.a: >> ${WRKSRC}/hdf/jpeg/Makefile
-	printf '\t@${ECHO} Using the already installed JPEG library\n' \
-		>> ${WRKSRC}/hdf/jpeg/Makefile
-	printf '\nclean:\n\ttrue\n' >> ${WRKSRC}/hdf/jpeg/Makefile
-	printf '\ninstall-lib:\n\ttrue\n' >> ${WRKSRC}/hdf/jpeg/Makefile
-	printf '\ninstall:\n\ttrue\n' >> ${WRKSRC}/hdf/jpeg/Makefile
-	-${LN} -s ${PREFIX}/lib/libjpeg* ${WRKSRC}/hdf/jpeg/
-	-${LN} -s ${PREFIX}/include/j*.h ${WRKSRC}/hdf/jpeg/
-	test -d ${WRKSRC}/hdf/zlib.came-with-HDF || \
-		${MV} -f ${WRKSRC}/hdf/zlib ${WRKSRC}/hdf/zlib.came-with-HDF
-	-${MKDIR} ${WRKSRC}/hdf/zlib
-	${RM} -f ${WRKSRC}/hdf/zlib/Makefile
-	${ECHO} #Phony makefile > ${WRKSRC}/hdf/zlib/Makefile
-	${ECHO} >> ${WRKSRC}/hdf/zlib/Makefile
-	${ECHO} libzlib.a: >> ${WRKSRC}/hdf/zlib/Makefile
-	printf '\t@${ECHO} Using the already installed ZLIB library\n' \
-		>> ${WRKSRC}/hdf/zlib/Makefile
-	printf '\nclean:\n\ttrue\n' >> ${WRKSRC}/hdf/zlib/Makefile
-	printf '\ninstall-lib:\n\ttrue\n' >> ${WRKSRC}/hdf/zlib/Makefile
-	printf '\ninstall:\n\ttrue\n' >> ${WRKSRC}/hdf/zlib/Makefile
-	-${LN} -s /usr/lib/${BINFORMAT}/libz* ${WRKSRC}/hdf/zlib/
-	-${LN} -s /usr/include/zconf.h /usr/include/zlib.h ${WRKSRC}/hdf/zlib/
+post-patch:
+	${RM} -rf ${WRKSRC}/hdf/jpeg
+	${RM} -rf ${WRKSRC}/hdf/zlib
 
-post-install:
-	@for binary in `${GREP} ^bin/ ${PLIST}` ; do strip ${PREFIX}/$$binary; done
+do-configure:
+	${CP} -rp ${FILESDIR}/Makefile ${FILESDIR}/hdf \
+		${FILESDIR}/mfhdf ${FILESDIR}/man ${WRKSRC}
+	${LN} -s config/netcdf-fbsd.h ${WRKSRC}/mfhdf/libsrc/netcdf.h
+	${LN} -s netcdf-fbsd.inc ${WRKSRC}/mfhdf/fortran/config/netcdf.inc
 
-test:
-	cd ${WRKSRC}; make ${MAKE_FLAGS} ${MAKEFILE} test
+test: build
+	cd ${WRKSRC}; ${MAKE} test
 
 .include <bsd.port.mk>
diff --git a/science/hdf5-18/distinfo b/science/hdf5-18/distinfo
index da49d27..6e22d24 100644
--- a/science/hdf5-18/distinfo
+++ b/science/hdf5-18/distinfo
@@ -1 +1 @@
-MD5 (HDF4.1r2.tar.gz) = 52814865529791e3a39637fd851a7143
+MD5 (HDF4.1r3.tar.gz) = 975f84ad8c5910841995c9d339fbd8bb
diff --git a/science/hdf5-18/files/Makefile b/science/hdf5-18/files/Makefile
new file mode 100644
index 0000000..0dc23c1
--- /dev/null
+++ b/science/hdf5-18/files/Makefile
@@ -0,0 +1,16 @@
+# $FreeBSD$
+
+SUBDIR	 = hdf mfhdf man
+#PREFIX	?= /usr/local
+LIBDIR	?= ${PREFIX}/lib
+BINDIR	?= ${PREFIX}/bin
+
+.MAKEFLAGS: PREFIX=${PREFIX} LIBDIR=${LIBDIR} BINDIR=${BINDIR}
+
+test: all
+	# testing in hdf
+	@cd hdf && ${MAKE} hdf-test
+	# testing in mfhdf
+	@cd mfhdf && ${MAKE} test
+
+.include <bsd.subdir.mk>
diff --git a/science/hdf5-18/files/hdf/Makefile b/science/hdf5-18/files/hdf/Makefile
new file mode 100644
index 0000000..1f9663c
--- /dev/null
+++ b/science/hdf5-18/files/hdf/Makefile
@@ -0,0 +1,9 @@
+# $FreeBSD$
+
+SUBDIR	 = src util test
+
+hdf-test: all
+	cd util && ${MAKE} test
+	cd test && ${MAKE} test
+
+.include <bsd.subdir.mk>
diff --git a/science/hdf5-18/files/hdf/src/Makefile b/science/hdf5-18/files/hdf/src/Makefile
new file mode 100644
index 0000000..5dde282
--- /dev/null
+++ b/science/hdf5-18/files/hdf/src/Makefile
@@ -0,0 +1,54 @@
+# $FreeBSD$
+
+LIB=df
+
+# uncomment the line below to avoid building static libraries
+#INTERNALLIB=YES
+LIBDIR=${PREFIX}/lib
+
+SHLIB_MAJOR=1
+SHLIB_MINOR=0
+
+SRCS=atom.c  bitvect.c  cdeflate.c  cnbit.c  cnone.c  crle.c  cskphuff.c \
+	df24.c  df24f.c dfan.c  dfanf.c dfcomp.c  dfconv.c dff.c  dfgr.c \
+	dfgroup.c  dfimcomp.c  dfjpeg.c  dfkconv.c  dfkcray.c  dfkfuji.c \
+	dfknat.c dfkswap.c dfkvms.c dfp.c  dfpf.c dfr8.c dfr8f.c dfrle.c \
+	dfsd.c dfsdf.c dfstubs.c dfufp2i.c dfunjpeg.c dfutil.c dfutilf.c \
+	dir_mac.c  dynarray.c   glist.c  hbitio.c   hblocks.c  hbuffer.c \
+	hchunks.c hcomp.c hcompri.c  hdfalloc.c herr.c herrf.c hextelt.c \
+	hfile.c hfiledd.c hfilef.c hkit.c linklist.c mcache.c \
+	mfan.c mfanf.c  mfgr.c mfgrf.c mstdio.c tbbt.c  vattr.c vattrf.c \
+	vconv.c  vg.c vgf.c  vgp.c  vhi.c vio.c  vparse.c vrw.c  vsfld.c \
+	df24ff.f  dfanff.f dfff.f  dfpff.f dfr8ff.f  dfsdff.f dfufp2if.f \
+	hfileff.f mfgrff.f vattrff.f vgff.f
+
+CFLAGS	+= -I${PREFIX}/include
+FFLAGS	+= ${CFLAGS}
+
+.if !defined(OSVERSION)
+.if exists(/sbin/sysctl)
+OSVERSION!=	/sbin/sysctl -n kern.osreldate
+.else
+OSVERSION!=	/usr/sbin/sysctl -n kern.osreldate
+.endif
+.endif
+
+.if ${OSVERSION} >= 400004
+LDADD	+= -L${PREFIX}/lib -ljpeg -lg2c -lz -lm
+.else
+LDADD	+= -L${PREFIX}/lib -ljpeg -lf2c -lz
+.endif
+
+afterinstall:
+	install -c -o root -g wheel -m 444 \
+		atom.h  bitvect.h  cdeflate.h   cnbit.h  cnone.h  crle.h \
+		cskphuff.h df.h dfan.h  dfconvrt.h dfgr.h dfi.h dfivms.h \
+		dfrig.h dfsd.h dfstubs.h  dfufp2i.h dir_mac.h dynarray.h \
+		glist.h  hbitio.h  hchunks.h  hcomp.h  hcompi.h  hconv.h \
+		hdf.h hdfi.h  herr.h hfile.h hkit.h  hlimits.h hntdefs.h \
+		hproto.h hqueue.h htags.h linklist.h maldebug.h mcache.h \
+		mfan.h mfgr.h mstdio.h patchlevel.h sys_dir_mac.h tbbt.h \
+		trace.h vattr.h vg.h vgint.h hdf.inc dffunc.inc \
+			${PREFIX}/include
+
+.include <bsd.lib.mk>
diff --git a/science/hdf5-18/files/hdf/test/Makefile b/science/hdf5-18/files/hdf/test/Makefile
new file mode 100644
index 0000000..3a3c8ca
--- /dev/null
+++ b/science/hdf5-18/files/hdf/test/Makefile
@@ -0,0 +1,68 @@
+# $FreeBSD$
+
+CSRCS= 	rig.c sdstr.c blocks.c an.c anfile.c extelt.c file.c file1.c vers.c \
+	sdmms.c sdnmms.c slab.c litend.c tvset.c comp.c bitio.c tree.c macros.c \
+	conv.c nbit.c man.c mgr.c testhdf.c tbv.c tvsfpack.c chunks.c tvattr.c \
+    buffer.c
+
+COBJS=	${CSRCS:S/.c/.o/g}
+
+FSRCS= fortest.c fortestF.f forsupff.f forsupf.c \
+	manf.f mgrf.f slabwf.f t24f.f tanf.f tanfilef.f tpf.f tr8f.f \
+	tsdmmsf.f tsdnmmsf.f tsdnntf.f tsdntf.f tsdstrf.f tstubsf.f \
+        tvsetf.f, tvattrf.f
+
+FOBJS = fortestF.o forsupff.o forsupf.o \
+	manf.o mgrf.o slabwf.o t24f.o tanf.o tanfilef.o tpf.o tr8f.o \
+	tsdmmsf.o tsdnmmsf.o tsdnntf.o tsdntf.o tsdstrf.o tstubsf.o  \
+        tvsetf.o tvattrf.o
+
+#CFORSUPSRCS = forsupf.c
+
+HDFLIB	 = ${.CURDIR}/../src
+CFLAGS	+= -I${HDFLIB}
+FFLAGS	+= ${CFLAGS} -Nn802 -Nx400
+
+FTESTS = fortest fortestF
+
+all: testhdf $(FTESTS) gentest
+
+#CFORSUPOBJS = forsupf.o
+
+TESTF = fortest.o
+
+# directory used by extelt test.
+TESTDIR = testdir
+
+$(FOBJS): fortest.inc
+
+test: atest-hdf
+
+atest-hdf: testhdf $(FTESTS)
+	-rm -f *.hdf 
+	env LD_LIBRARY_PATH=${.CURDIR}/../src ./testhdf
+	-rm -f *.hdf 
+	env LD_LIBRARY_PATH=${.CURDIR}/../src ./fortest
+
+testhdf: $(COBJS) $(HDFLIB)/libdf.so
+	$(CC) -o testhdf $(COBJS) $(HDFLIB)/libdf.so -lm
+	test -d $(TESTDIR) || mkdir $(TESTDIR)
+
+fortestF: $(FOBJS) $(HDFLIB)/libdf.so
+	$(FC) $(FFLAGS) -o $@ $(FOBJS) $(HDFLIB)/libdf.so -lm
+
+fortest: $(HDFLIB)/libdf.so fortest.c $(CHDRS)
+	$(CC) $(CFLAGS) -o fortest fortest.c $(HDFLIB)/libdf.so -lm
+
+gentest: gentest.c $(HDFLIB)/libdf.so
+	$(CC) $(CFLAGS) gentest.c -o gentest $(HDFLIB)/libdf.so -lm
+
+clean: 
+	-rm -f $(COBJS) testhdf $(FOBJS) $(FTESTS) \
+	core *.hdf ptesthdf qtesthdf gentest *.o fortest.arg $(TESTDIR)/* \
+	.depend
+
+depend: 
+	mkdep ${CFLAGS} ${CSRCS}
+
+install:
diff --git a/science/hdf5-18/files/hdf/util/Makefile b/science/hdf5-18/files/hdf/util/Makefile
new file mode 100644
index 0000000..6d4ccae
--- /dev/null
+++ b/science/hdf5-18/files/hdf/util/Makefile
@@ -0,0 +1,30 @@
+# $FreeBSD$
+
+UTILS	 = hdf24to8 hdfcomp hdfls hdfpack hdftopal hdftor8 paltohdf \
+        r8tohdf ristosds  vmake vshow hdf8to24 hdf2jpeg jpeg2hdf fp2hdf \
+	hdfunpac vcompat
+
+all: ${UTILS} hdfed
+
+HEOBJ = he_main.o he_cntrl.o he_disp.o he_file.o
+
+#CFLAGS	+= -I${PREFIX}/include -I${.CURDIR}/../src/
+CFLAGS	+=  -I${.CURDIR}/../src/
+#LDFLAGS	+= -L${PREFIX}/lib -ljpeg -L${.CURDIR}/../src/ -ldf -lz
+LDFLAGS	+= -L${.CURDIR}/../src/ -ldf
+
+hdfed: he.h he_proto.h $(HEOBJ)
+	$(CC) $(HEOBJ) $(LDFLAGS) -o hdfed
+
+test: all fptest
+	env LD_LIBRARY_PATH=${.CURDIR}/../src ./testutil.sh
+
+clean:
+	-rm -f *.o $(UTILS) hdfed fptest
+	-rm -f o* ctx* cb* fptestf .depend
+
+depend:
+	mkdep ${CFLAGS} ${UTILS:S/$/.c/g} ${HEOBJ:S/.o/.c/g}
+
+install: all
+	install -c -s -o root -g wheel -m 555 ${UTILS} hdfed ${BINDIR}
diff --git a/science/hdf5-18/files/man/Makefile b/science/hdf5-18/files/man/Makefile
new file mode 100644
index 0000000..eeea6c1
--- /dev/null
+++ b/science/hdf5-18/files/man/Makefile
@@ -0,0 +1,17 @@
+# $FreeBSD$
+
+MANDIR	=	${PREFIX}/man/man
+
+MAN1	=	hdf.1 hdfunpac.1
+MAN3	=	gr_chunk.3
+
+.include <bsd.man.mk>
+
+install: all-man maninstall
+
+clean:
+	-rm -f *.gz
+
+all: all-man
+
+depend:
diff --git a/science/hdf5-18/files/mfhdf/Makefile b/science/hdf5-18/files/mfhdf/Makefile
new file mode 100644
index 0000000..202766e
--- /dev/null
+++ b/science/hdf5-18/files/mfhdf/Makefile
@@ -0,0 +1,13 @@
+# $FreeBSD$
+
+SUBDIR		= fortran libsrc ncgen ncdump nctest dumper
+
+.include <bsd.subdir.mk>
+
+test: all
+	@for d in ${SUBDIR} ; do \
+		echo "===> testing in $$d"; \
+		cd $$d; \
+		${MAKE} test; \
+		cd ..; \
+	done
diff --git a/science/hdf5-18/files/mfhdf/dumper/Makefile b/science/hdf5-18/files/mfhdf/dumper/Makefile
new file mode 100644
index 0000000..1bd8b3d
--- /dev/null
+++ b/science/hdf5-18/files/mfhdf/dumper/Makefile
@@ -0,0 +1,13 @@
+# $FreeBSD$
+
+PROG		 = hdp
+NOMAN		 = 1
+LDFLAGS		+= -L${.CURDIR}/../libsrc -L${.CURDIR}/../../hdf/src -lmfhdf -ldf
+CFLAGS		+= -I${.CURDIR}/../libsrc -I${.CURDIR}/../../hdf/src
+
+SRCS		=  hdp.c hdp_list.c hdp_sds.c hdp_util.c hdp_vd.c hdp_vg.c hdp_rig.c show.c hdp_dump.c hdp_gr.c
+
+.include <bsd.prog.mk>
+
+test: ${PROG}
+	env LD_LIBRARY_PATH=${.CURDIR}/../libsrc:${.CURDIR}/../../hdf/src sh testhdp.sh
diff --git a/science/hdf5-18/files/mfhdf/fortran/Makefile b/science/hdf5-18/files/mfhdf/fortran/Makefile
new file mode 100644
index 0000000..0357138
--- /dev/null
+++ b/science/hdf5-18/files/mfhdf/fortran/Makefile
@@ -0,0 +1,42 @@
+# $FreeBSD$
+
+.PATH:	${.CURDIR} ${.CURDIR}/config
+
+all:
+
+NOMAN	 =	1
+
+FFLAGS	+=	${CFLAGS} -DNDEBUG -Nn802 -Nx400
+
+LDFLAGS	+=	-L${.CURDIR}/../libsrc -L${.CURDIR}/../../hdf/src -lmfhdf -ldf
+
+afterinstall:
+	install -c -o root -g wheel -m 444 config/netcdf-fbsd.inc \
+		${PREFIX}/include/netcdf.inc
+
+.include <bsd.prog.mk>
+
+ENVIR	 =	env LD_LIBRARY_PATH=${.CURDIR}/../libsrc:${.CURDIR}/../../hdf/src
+
+CLEANFILES+=	hdftest hdftest.o ftest ftest-fbsd.o
+
+config/netcdf.inc:
+	ln -s netcdf-fbsd.inc config/netcdf.inc
+
+ftest:	ftest-fbsd.f config/netcdf.inc
+	${MAKE} PROG=$@ SRCS=ftest-fbsd.f $@
+
+hdftest: hdftest.f
+	${MAKE} PROG=$@ SRCS=hdftest.f $@
+
+test: ftest hdftest
+	mkdir -p testdir
+	# ================================
+	#  netCDF Fortran interface tests
+	# ================================
+	${ENVIR} ./ftest
+	${ENVIR} ./hdftest > hdfout.new
+	@diff -Bb hdfout.new hdftst.sav && \
+		echo "*** HDF-SD Fortran interface tests passed ***" || \
+		(echo "*** HDF-SD Fortran interface tests failed ***"; \
+		echo "The above differences are OK if small")
diff --git a/science/hdf5-18/files/mfhdf/libsrc/Makefile b/science/hdf5-18/files/mfhdf/libsrc/Makefile
new file mode 100644
index 0000000..7ca23f2
--- /dev/null
+++ b/science/hdf5-18/files/mfhdf/libsrc/Makefile
@@ -0,0 +1,43 @@
+# $FreeBSD$
+
+.PATH:  ${.CURDIR} ${.CURDIR}/../fortran/config ${.CURDIR}/../fortran
+
+SRCS		= array.c attr.c cdf.c dim.c file.c iarray.c error.c \
+		  globdef.c putget.c putgetg.c sharray.c string.c var.c \
+		  hdfsds.c mfsd.c nssdc.c xdrposix.c \
+		  jackets-fbsd.c mfsdf.c mfsdff.f
+
+LIB		= mfhdf
+SHLIB_MAJOR	= 2
+SHLIB_MINOR	= 3
+
+LIBDIR		= ${PREFIX}/lib
+
+# uncomment the line below to avoid building static libraries
+#INTERNALLIB	= Yes
+
+CFLAGS	+=	-DNDEBUG -DHDF -I${.CURDIR}/../../hdf/src -I${.CURDIR}
+.if ${MACHINE_ARCH} == "i386"
+CFLAGS	+=	-DSWAP
+.endif
+
+LDADD	+=	-L${.CURDIR}/../../hdf/src -ldf
+LDFLAGS	+=	-L. -l${LIB} ${LDADD}
+
+afterinstall:
+	install -c -o root -g wheel -m 444 hdf2netcdf.h local_nc.h \
+		mfhdf.h netcdf.h ${PREFIX}/include
+
+.include <bsd.lib.mk>
+
+test: ${SHLIB_NAME} cdftest hdftest
+	env LD_LIBRARY_PATH=${.CURDIR}:${.CURDIR}/../../hdf/src ./cdftest > cdfout.new
+	@diff cdfout.new testout.sav && \
+		echo "*** netCDF passes formatted test ***" || \
+                (echo "*** netCDF fails formatted test ***" ; \
+                echo "The above differences are OK if small")
+	env LD_LIBRARY_PATH=${.CURDIR}:${.CURDIR}/../../hdf/src ./hdftest > hdfout.new
+	@diff hdfout.new hdfout.sav && \
+		echo "*** HDF passes formatted test ***" || \
+                (echo "*** HDF fails formatted test ***" ; \
+                echo "The above differences are OK if small")
diff --git a/science/hdf5-18/files/mfhdf/ncdump/Makefile b/science/hdf5-18/files/mfhdf/ncdump/Makefile
new file mode 100644
index 0000000..727b1de
--- /dev/null
+++ b/science/hdf5-18/files/mfhdf/ncdump/Makefile
@@ -0,0 +1,22 @@
+# $FreeBSD$
+
+PROG		 = ncdump
+MANDIR		 = ${PREFIX}/man/man
+
+LDFLAGS		+= -L${.CURDIR}/../libsrc -L${.CURDIR}/../../hdf/src -lmfhdf -ldf
+CFLAGS		+= -I${.CURDIR}/../libsrc
+SRCS		=  ncdump.c vardata.c dumplib.c
+
+.include <bsd.prog.mk>
+
+ENVIR		= env LD_LIBRARY_PATH=${.CURDIR}/../../hdf/src:${.CURDIR}/../libsrc
+NCGEN		= ${.CURDIR}/../ncgen/ncgen
+
+test:		$(PROG) test0.cdl
+	${ENVIR} $(NCGEN) -o test0.nc -n test0.cdl
+	${ENVIR} ./$(PROG) test0.nc > test1.cdl
+	${ENVIR} $(NCGEN) -o test1.nc -n test1.cdl
+	${ENVIR} ./$(PROG) -n test0 test1.nc > test2.cdl
+	@cmp test1.cdl test2.cdl && \
+	    echo "*** $(PROGRAM) test successful ***" ; \
+	    rm test1.cdl test1.nc test2.cdl
diff --git a/science/hdf5-18/files/mfhdf/ncgen/Makefile b/science/hdf5-18/files/mfhdf/ncgen/Makefile
new file mode 100644
index 0000000..d954137
--- /dev/null
+++ b/science/hdf5-18/files/mfhdf/ncgen/Makefile
@@ -0,0 +1,72 @@
+# $FreeBSD$
+
+PROG		 = ncgen
+MANDIR		 = ${PREFIX}/man/man
+LDFLAGS		+= -L${.CURDIR}/../libsrc -L${.CURDIR}/../../hdf/src -lmfhdf -ldf
+CFLAGS		+= -I${.CURDIR}/../libsrc -I${.CURDIR}/../../hdf/src -DNDEBUG
+SRCS		 = main.c generate.c load.c ncgentab.c escapes.c \
+		  getfill.c init.c close.c genlib.c
+
+ENVIR		 = env LD_LIBRARY_PATH=${.CURDIR}/../libsrc:${.CURDIR}/../../hdf/src
+NCDUMP		 = ${.CURDIR}/../ncdump/ncdump
+
+test:           $(PROG) test0.cdl btest ctest ftest
+
+ncgenyy.c: ncgen.l
+	${LEX} ${LFLAGS} ncgen.l
+	mv lex.yy.c ncgenyy.c
+	
+ncgentab.c: ncgenyy.c ncgen.y
+	${YACC} ${YFLAGS} ncgen.y
+	mv y.tab.c ncgentab.c
+	mv y.tab.h ncgentab.h
+
+.include <bsd.prog.mk>
+
+#
+# test "-b" option of ncgen
+#
+btest:		$(PROG) test0.cdl test1.cdl
+	${ENVIR} ./$(PROG) -b test1.cdl
+	${ENVIR} $(NCDUMP) test1.nc > test2.cdl
+	@diff test1.cdl test2.cdl && \
+	    echo "*** $(PROG) -b test successful ***"
+
+#
+# test "-c" option of ncgen
+#
+ctest:		test1.cdl ctest0
+	${ENVIR} ./ctest0		# tests `-c' option, creates ctest0.nc
+	${ENVIR} $(NCDUMP) -n test1 ctest0.nc > ctest1.cdl
+	@diff test1.cdl ctest1.cdl && \
+	    echo "*** $(PROG) -c test successful ***"
+
+ctest0:		ncgen test0.cdl
+	${ENVIR} ./$(PROG) -c -o ctest0.nc test0.cdl > test0.c
+	$(CC) $(CFLAGS) -o $@ test0.c ${LDFLAGS}
+
+#
+# test "-f" option of ncgen
+#
+ftest:	test1.cdl ftest0
+	${ENVIR} ./ftest0
+	${ENVIR} $(NCDUMP) -n test1 ftest0.nc > ftest1.cdl
+	@if diff test1.cdl ftest1.cdl; then \
+		echo "*** ncgen -f test successful ***"; \
+	else \
+		echo "*** ncgen -f test failed " \
+		    "(but roundoff differences are OK) ***"; \
+	fi
+
+ftest0:	$(PROG) test0.cdl netcdf.inc
+	${ENVIR} ./$(PROG) -f -o ftest0.nc test0.cdl > test0.f; \
+	$(FC) $(FFLAGS) ${CFLAGS} -o $@ test0.f ${LDFLAGS}
+
+test1.cdl:	test0.nc
+	${ENVIR} $(NCDUMP) -n test1 test0.nc > $@
+
+test0.nc:	$(PROG) test0.cdl
+	${ENVIR} ./$(PROG) -b -o test0.nc test0.cdl
+
+netcdf.inc:
+	ln -s ../fortran/config/netcdf-fbsd.inc $@
diff --git a/science/hdf5-18/files/mfhdf/nctest/Makefile b/science/hdf5-18/files/mfhdf/nctest/Makefile
new file mode 100644
index 0000000..722d352
--- /dev/null
+++ b/science/hdf5-18/files/mfhdf/nctest/Makefile
@@ -0,0 +1,19 @@
+# $FreeBSD$
+
+PROG		 = nctest
+NOMAN		 = 1
+CFLAGS		+= -I${.CURDIR}/../libsrc
+LDFLAGS		+= -L${.CURDIR}/../libsrc -L${.CURDIR}/../../hdf/src -lmfhdf -ldf
+SRCS		= varget.c vargetg.c varput.c varputg.c vardef.c vartests.c \
+		  vputget.c vputgetg.c driver.c cdftests.c dimtests.c rec.c \
+		  atttests.c misctest.c add.c error.c emalloc.c val.c slabs.c
+
+install:
+
+.include <bsd.prog.mk>
+
+test:		$(PROG)
+	@ echo "==========================="
+	@ echo "netCDF C interface tests"
+	@ echo "==========================="
+	env LD_LIBRARY_PATH=${.CURDIR}/../libsrc:${.CURDIR}/../../hdf/src ./$(PROG)
diff --git a/science/hdf5-18/pkg-plist b/science/hdf5-18/pkg-plist
index f24c36c..3a4df09 100644
--- a/science/hdf5-18/pkg-plist
+++ b/science/hdf5-18/pkg-plist
@@ -20,7 +20,11 @@ bin/vcompat
 bin/vmake
 bin/vshow
 lib/libmfhdf.a
+lib/libmfhdf.so.2
+lib/libmfhdf.so
 lib/libdf.a
+lib/libdf.so
+lib/libdf.so.1
 include/atom.h
 include/bitvect.h
 include/cdeflate.h
@@ -30,7 +34,6 @@ include/crle.h
 include/cskphuff.h
 include/df.h
 include/dfan.h
-include/dffunc.f90
 include/dffunc.inc
 include/dfgr.h
 include/dfi.h
@@ -45,7 +48,6 @@ include/hcomp.h
 include/hcompi.h
 include/hconv.h
 include/hdf.h
-include/hdf.f90
 include/hdf.inc
 include/hdf2netcdf.h
 include/hdfi.h
@@ -63,7 +65,6 @@ include/mfgr.h
 include/mfhdf.h
 include/mstdio.h
 include/netcdf.h
-include/netcdf.f90
 include/netcdf.inc
 include/tbbt.h
 include/vattr.h
diff --git a/science/hdf5/Makefile b/science/hdf5/Makefile
index 7d13c14..bd569b4 100644
--- a/science/hdf5/Makefile
+++ b/science/hdf5/Makefile
@@ -6,63 +6,32 @@
 # $FreeBSD$
 #
 
-DISTNAME=	HDF4.1r2
-PKGNAME=	hdf-4.1r2
+DISTNAME=	HDF4.1r3
+PKGNAME=	hdf-4.1r3
 CATEGORIES=	graphics
-MASTER_SITES=	ftp://ftp.ncsa.uiuc.edu/HDF/HDF4.1r2/tar/
+MASTER_SITES=	ftp://ftp.ncsa.uiuc.edu/HDF/HDF/HDF4.1r3/tar/
 
 MAINTAINER=	mi@aldan.algebra.com
 
 LIB_DEPENDS=	jpeg.9:${PORTSDIR}/graphics/jpeg
 
 MAN1=		hdf.1 hdfunpac.1 ncdump.1 ncgen.1
+MAN3=		gr_chunk.3
+MANCOMPRESSED=	maybe
 
-GNU_CONFIGURE=	yes
-FC?=		f77 # Can also be g77 for the newer one
-MAKE_FLAGS=	CC="$(CC)" FC="${FC}" -f
-MAKE_ENV=	pwrkdir=${WRKDIR}
-#"wrkdir" doesn't work for some reason in the above
+MAKE_ARGS=	PREFIX="${PREFIX}" -j 2
 
-# This will create dummy Makefiles and some links in the jpeg and libz
-# subdirectories. This way, we do not need to hunt all the dependencies
-# out. Shame on the lib's developers, though, this can not be done through
-# `configure'.	-mi
-pre-build:
-	${AR} -r ${WRKDIR}/libz.a /dev/null
-	${RANLIB} ${WRKDIR}/libz.a
-	test -d ${WRKSRC}/hdf/jpeg.came-with-HDF || \
-		${MV} -f ${WRKSRC}/hdf/jpeg ${WRKSRC}/hdf/jpeg.came-with-HDF
-	-${MKDIR} ${WRKSRC}/hdf/jpeg
-	${RM} -f ${WRKSRC}/hdf/jpeg/Makefile
-	${ECHO} #Phony makefile > ${WRKSRC}/hdf/jpeg/Makefile
-	${ECHO} >> ${WRKSRC}/hdf/jpeg/Makefile
-	${ECHO} libjpeg.a: >> ${WRKSRC}/hdf/jpeg/Makefile
-	printf '\t@${ECHO} Using the already installed JPEG library\n' \
-		>> ${WRKSRC}/hdf/jpeg/Makefile
-	printf '\nclean:\n\ttrue\n' >> ${WRKSRC}/hdf/jpeg/Makefile
-	printf '\ninstall-lib:\n\ttrue\n' >> ${WRKSRC}/hdf/jpeg/Makefile
-	printf '\ninstall:\n\ttrue\n' >> ${WRKSRC}/hdf/jpeg/Makefile
-	-${LN} -s ${PREFIX}/lib/libjpeg* ${WRKSRC}/hdf/jpeg/
-	-${LN} -s ${PREFIX}/include/j*.h ${WRKSRC}/hdf/jpeg/
-	test -d ${WRKSRC}/hdf/zlib.came-with-HDF || \
-		${MV} -f ${WRKSRC}/hdf/zlib ${WRKSRC}/hdf/zlib.came-with-HDF
-	-${MKDIR} ${WRKSRC}/hdf/zlib
-	${RM} -f ${WRKSRC}/hdf/zlib/Makefile
-	${ECHO} #Phony makefile > ${WRKSRC}/hdf/zlib/Makefile
-	${ECHO} >> ${WRKSRC}/hdf/zlib/Makefile
-	${ECHO} libzlib.a: >> ${WRKSRC}/hdf/zlib/Makefile
-	printf '\t@${ECHO} Using the already installed ZLIB library\n' \
-		>> ${WRKSRC}/hdf/zlib/Makefile
-	printf '\nclean:\n\ttrue\n' >> ${WRKSRC}/hdf/zlib/Makefile
-	printf '\ninstall-lib:\n\ttrue\n' >> ${WRKSRC}/hdf/zlib/Makefile
-	printf '\ninstall:\n\ttrue\n' >> ${WRKSRC}/hdf/zlib/Makefile
-	-${LN} -s /usr/lib/${BINFORMAT}/libz* ${WRKSRC}/hdf/zlib/
-	-${LN} -s /usr/include/zconf.h /usr/include/zlib.h ${WRKSRC}/hdf/zlib/
+post-patch:
+	${RM} -rf ${WRKSRC}/hdf/jpeg
+	${RM} -rf ${WRKSRC}/hdf/zlib
 
-post-install:
-	@for binary in `${GREP} ^bin/ ${PLIST}` ; do strip ${PREFIX}/$$binary; done
+do-configure:
+	${CP} -rp ${FILESDIR}/Makefile ${FILESDIR}/hdf \
+		${FILESDIR}/mfhdf ${FILESDIR}/man ${WRKSRC}
+	${LN} -s config/netcdf-fbsd.h ${WRKSRC}/mfhdf/libsrc/netcdf.h
+	${LN} -s netcdf-fbsd.inc ${WRKSRC}/mfhdf/fortran/config/netcdf.inc
 
-test:
-	cd ${WRKSRC}; make ${MAKE_FLAGS} ${MAKEFILE} test
+test: build
+	cd ${WRKSRC}; ${MAKE} test
 
 .include <bsd.port.mk>
diff --git a/science/hdf5/distinfo b/science/hdf5/distinfo
index da49d27..6e22d24 100644
--- a/science/hdf5/distinfo
+++ b/science/hdf5/distinfo
@@ -1 +1 @@
-MD5 (HDF4.1r2.tar.gz) = 52814865529791e3a39637fd851a7143
+MD5 (HDF4.1r3.tar.gz) = 975f84ad8c5910841995c9d339fbd8bb
diff --git a/science/hdf5/files/Makefile b/science/hdf5/files/Makefile
new file mode 100644
index 0000000..0dc23c1
--- /dev/null
+++ b/science/hdf5/files/Makefile
@@ -0,0 +1,16 @@
+# $FreeBSD$
+
+SUBDIR	 = hdf mfhdf man
+#PREFIX	?= /usr/local
+LIBDIR	?= ${PREFIX}/lib
+BINDIR	?= ${PREFIX}/bin
+
+.MAKEFLAGS: PREFIX=${PREFIX} LIBDIR=${LIBDIR} BINDIR=${BINDIR}
+
+test: all
+	# testing in hdf
+	@cd hdf && ${MAKE} hdf-test
+	# testing in mfhdf
+	@cd mfhdf && ${MAKE} test
+
+.include <bsd.subdir.mk>
diff --git a/science/hdf5/files/hdf/Makefile b/science/hdf5/files/hdf/Makefile
new file mode 100644
index 0000000..1f9663c
--- /dev/null
+++ b/science/hdf5/files/hdf/Makefile
@@ -0,0 +1,9 @@
+# $FreeBSD$
+
+SUBDIR	 = src util test
+
+hdf-test: all
+	cd util && ${MAKE} test
+	cd test && ${MAKE} test
+
+.include <bsd.subdir.mk>
diff --git a/science/hdf5/files/hdf/src/Makefile b/science/hdf5/files/hdf/src/Makefile
new file mode 100644
index 0000000..5dde282
--- /dev/null
+++ b/science/hdf5/files/hdf/src/Makefile
@@ -0,0 +1,54 @@
+# $FreeBSD$
+
+LIB=df
+
+# uncomment the line below to avoid building static libraries
+#INTERNALLIB=YES
+LIBDIR=${PREFIX}/lib
+
+SHLIB_MAJOR=1
+SHLIB_MINOR=0
+
+SRCS=atom.c  bitvect.c  cdeflate.c  cnbit.c  cnone.c  crle.c  cskphuff.c \
+	df24.c  df24f.c dfan.c  dfanf.c dfcomp.c  dfconv.c dff.c  dfgr.c \
+	dfgroup.c  dfimcomp.c  dfjpeg.c  dfkconv.c  dfkcray.c  dfkfuji.c \
+	dfknat.c dfkswap.c dfkvms.c dfp.c  dfpf.c dfr8.c dfr8f.c dfrle.c \
+	dfsd.c dfsdf.c dfstubs.c dfufp2i.c dfunjpeg.c dfutil.c dfutilf.c \
+	dir_mac.c  dynarray.c   glist.c  hbitio.c   hblocks.c  hbuffer.c \
+	hchunks.c hcomp.c hcompri.c  hdfalloc.c herr.c herrf.c hextelt.c \
+	hfile.c hfiledd.c hfilef.c hkit.c linklist.c mcache.c \
+	mfan.c mfanf.c  mfgr.c mfgrf.c mstdio.c tbbt.c  vattr.c vattrf.c \
+	vconv.c  vg.c vgf.c  vgp.c  vhi.c vio.c  vparse.c vrw.c  vsfld.c \
+	df24ff.f  dfanff.f dfff.f  dfpff.f dfr8ff.f  dfsdff.f dfufp2if.f \
+	hfileff.f mfgrff.f vattrff.f vgff.f
+
+CFLAGS	+= -I${PREFIX}/include
+FFLAGS	+= ${CFLAGS}
+
+.if !defined(OSVERSION)
+.if exists(/sbin/sysctl)
+OSVERSION!=	/sbin/sysctl -n kern.osreldate
+.else
+OSVERSION!=	/usr/sbin/sysctl -n kern.osreldate
+.endif
+.endif
+
+.if ${OSVERSION} >= 400004
+LDADD	+= -L${PREFIX}/lib -ljpeg -lg2c -lz -lm
+.else
+LDADD	+= -L${PREFIX}/lib -ljpeg -lf2c -lz
+.endif
+
+afterinstall:
+	install -c -o root -g wheel -m 444 \
+		atom.h  bitvect.h  cdeflate.h   cnbit.h  cnone.h  crle.h \
+		cskphuff.h df.h dfan.h  dfconvrt.h dfgr.h dfi.h dfivms.h \
+		dfrig.h dfsd.h dfstubs.h  dfufp2i.h dir_mac.h dynarray.h \
+		glist.h  hbitio.h  hchunks.h  hcomp.h  hcompi.h  hconv.h \
+		hdf.h hdfi.h  herr.h hfile.h hkit.h  hlimits.h hntdefs.h \
+		hproto.h hqueue.h htags.h linklist.h maldebug.h mcache.h \
+		mfan.h mfgr.h mstdio.h patchlevel.h sys_dir_mac.h tbbt.h \
+		trace.h vattr.h vg.h vgint.h hdf.inc dffunc.inc \
+			${PREFIX}/include
+
+.include <bsd.lib.mk>
diff --git a/science/hdf5/files/hdf/test/Makefile b/science/hdf5/files/hdf/test/Makefile
new file mode 100644
index 0000000..3a3c8ca
--- /dev/null
+++ b/science/hdf5/files/hdf/test/Makefile
@@ -0,0 +1,68 @@
+# $FreeBSD$
+
+CSRCS= 	rig.c sdstr.c blocks.c an.c anfile.c extelt.c file.c file1.c vers.c \
+	sdmms.c sdnmms.c slab.c litend.c tvset.c comp.c bitio.c tree.c macros.c \
+	conv.c nbit.c man.c mgr.c testhdf.c tbv.c tvsfpack.c chunks.c tvattr.c \
+    buffer.c
+
+COBJS=	${CSRCS:S/.c/.o/g}
+
+FSRCS= fortest.c fortestF.f forsupff.f forsupf.c \
+	manf.f mgrf.f slabwf.f t24f.f tanf.f tanfilef.f tpf.f tr8f.f \
+	tsdmmsf.f tsdnmmsf.f tsdnntf.f tsdntf.f tsdstrf.f tstubsf.f \
+        tvsetf.f, tvattrf.f
+
+FOBJS = fortestF.o forsupff.o forsupf.o \
+	manf.o mgrf.o slabwf.o t24f.o tanf.o tanfilef.o tpf.o tr8f.o \
+	tsdmmsf.o tsdnmmsf.o tsdnntf.o tsdntf.o tsdstrf.o tstubsf.o  \
+        tvsetf.o tvattrf.o
+
+#CFORSUPSRCS = forsupf.c
+
+HDFLIB	 = ${.CURDIR}/../src
+CFLAGS	+= -I${HDFLIB}
+FFLAGS	+= ${CFLAGS} -Nn802 -Nx400
+
+FTESTS = fortest fortestF
+
+all: testhdf $(FTESTS) gentest
+
+#CFORSUPOBJS = forsupf.o
+
+TESTF = fortest.o
+
+# directory used by extelt test.
+TESTDIR = testdir
+
+$(FOBJS): fortest.inc
+
+test: atest-hdf
+
+atest-hdf: testhdf $(FTESTS)
+	-rm -f *.hdf 
+	env LD_LIBRARY_PATH=${.CURDIR}/../src ./testhdf
+	-rm -f *.hdf 
+	env LD_LIBRARY_PATH=${.CURDIR}/../src ./fortest
+
+testhdf: $(COBJS) $(HDFLIB)/libdf.so
+	$(CC) -o testhdf $(COBJS) $(HDFLIB)/libdf.so -lm
+	test -d $(TESTDIR) || mkdir $(TESTDIR)
+
+fortestF: $(FOBJS) $(HDFLIB)/libdf.so
+	$(FC) $(FFLAGS) -o $@ $(FOBJS) $(HDFLIB)/libdf.so -lm
+
+fortest: $(HDFLIB)/libdf.so fortest.c $(CHDRS)
+	$(CC) $(CFLAGS) -o fortest fortest.c $(HDFLIB)/libdf.so -lm
+
+gentest: gentest.c $(HDFLIB)/libdf.so
+	$(CC) $(CFLAGS) gentest.c -o gentest $(HDFLIB)/libdf.so -lm
+
+clean: 
+	-rm -f $(COBJS) testhdf $(FOBJS) $(FTESTS) \
+	core *.hdf ptesthdf qtesthdf gentest *.o fortest.arg $(TESTDIR)/* \
+	.depend
+
+depend: 
+	mkdep ${CFLAGS} ${CSRCS}
+
+install:
diff --git a/science/hdf5/files/hdf/util/Makefile b/science/hdf5/files/hdf/util/Makefile
new file mode 100644
index 0000000..6d4ccae
--- /dev/null
+++ b/science/hdf5/files/hdf/util/Makefile
@@ -0,0 +1,30 @@
+# $FreeBSD$
+
+UTILS	 = hdf24to8 hdfcomp hdfls hdfpack hdftopal hdftor8 paltohdf \
+        r8tohdf ristosds  vmake vshow hdf8to24 hdf2jpeg jpeg2hdf fp2hdf \
+	hdfunpac vcompat
+
+all: ${UTILS} hdfed
+
+HEOBJ = he_main.o he_cntrl.o he_disp.o he_file.o
+
+#CFLAGS	+= -I${PREFIX}/include -I${.CURDIR}/../src/
+CFLAGS	+=  -I${.CURDIR}/../src/
+#LDFLAGS	+= -L${PREFIX}/lib -ljpeg -L${.CURDIR}/../src/ -ldf -lz
+LDFLAGS	+= -L${.CURDIR}/../src/ -ldf
+
+hdfed: he.h he_proto.h $(HEOBJ)
+	$(CC) $(HEOBJ) $(LDFLAGS) -o hdfed
+
+test: all fptest
+	env LD_LIBRARY_PATH=${.CURDIR}/../src ./testutil.sh
+
+clean:
+	-rm -f *.o $(UTILS) hdfed fptest
+	-rm -f o* ctx* cb* fptestf .depend
+
+depend:
+	mkdep ${CFLAGS} ${UTILS:S/$/.c/g} ${HEOBJ:S/.o/.c/g}
+
+install: all
+	install -c -s -o root -g wheel -m 555 ${UTILS} hdfed ${BINDIR}
diff --git a/science/hdf5/files/man/Makefile b/science/hdf5/files/man/Makefile
new file mode 100644
index 0000000..eeea6c1
--- /dev/null
+++ b/science/hdf5/files/man/Makefile
@@ -0,0 +1,17 @@
+# $FreeBSD$
+
+MANDIR	=	${PREFIX}/man/man
+
+MAN1	=	hdf.1 hdfunpac.1
+MAN3	=	gr_chunk.3
+
+.include <bsd.man.mk>
+
+install: all-man maninstall
+
+clean:
+	-rm -f *.gz
+
+all: all-man
+
+depend:
diff --git a/science/hdf5/files/mfhdf/Makefile b/science/hdf5/files/mfhdf/Makefile
new file mode 100644
index 0000000..202766e
--- /dev/null
+++ b/science/hdf5/files/mfhdf/Makefile
@@ -0,0 +1,13 @@
+# $FreeBSD$
+
+SUBDIR		= fortran libsrc ncgen ncdump nctest dumper
+
+.include <bsd.subdir.mk>
+
+test: all
+	@for d in ${SUBDIR} ; do \
+		echo "===> testing in $$d"; \
+		cd $$d; \
+		${MAKE} test; \
+		cd ..; \
+	done
diff --git a/science/hdf5/files/mfhdf/dumper/Makefile b/science/hdf5/files/mfhdf/dumper/Makefile
new file mode 100644
index 0000000..1bd8b3d
--- /dev/null
+++ b/science/hdf5/files/mfhdf/dumper/Makefile
@@ -0,0 +1,13 @@
+# $FreeBSD$
+
+PROG		 = hdp
+NOMAN		 = 1
+LDFLAGS		+= -L${.CURDIR}/../libsrc -L${.CURDIR}/../../hdf/src -lmfhdf -ldf
+CFLAGS		+= -I${.CURDIR}/../libsrc -I${.CURDIR}/../../hdf/src
+
+SRCS		=  hdp.c hdp_list.c hdp_sds.c hdp_util.c hdp_vd.c hdp_vg.c hdp_rig.c show.c hdp_dump.c hdp_gr.c
+
+.include <bsd.prog.mk>
+
+test: ${PROG}
+	env LD_LIBRARY_PATH=${.CURDIR}/../libsrc:${.CURDIR}/../../hdf/src sh testhdp.sh
diff --git a/science/hdf5/files/mfhdf/fortran/Makefile b/science/hdf5/files/mfhdf/fortran/Makefile
new file mode 100644
index 0000000..0357138
--- /dev/null
+++ b/science/hdf5/files/mfhdf/fortran/Makefile
@@ -0,0 +1,42 @@
+# $FreeBSD$
+
+.PATH:	${.CURDIR} ${.CURDIR}/config
+
+all:
+
+NOMAN	 =	1
+
+FFLAGS	+=	${CFLAGS} -DNDEBUG -Nn802 -Nx400
+
+LDFLAGS	+=	-L${.CURDIR}/../libsrc -L${.CURDIR}/../../hdf/src -lmfhdf -ldf
+
+afterinstall:
+	install -c -o root -g wheel -m 444 config/netcdf-fbsd.inc \
+		${PREFIX}/include/netcdf.inc
+
+.include <bsd.prog.mk>
+
+ENVIR	 =	env LD_LIBRARY_PATH=${.CURDIR}/../libsrc:${.CURDIR}/../../hdf/src
+
+CLEANFILES+=	hdftest hdftest.o ftest ftest-fbsd.o
+
+config/netcdf.inc:
+	ln -s netcdf-fbsd.inc config/netcdf.inc
+
+ftest:	ftest-fbsd.f config/netcdf.inc
+	${MAKE} PROG=$@ SRCS=ftest-fbsd.f $@
+
+hdftest: hdftest.f
+	${MAKE} PROG=$@ SRCS=hdftest.f $@
+
+test: ftest hdftest
+	mkdir -p testdir
+	# ================================
+	#  netCDF Fortran interface tests
+	# ================================
+	${ENVIR} ./ftest
+	${ENVIR} ./hdftest > hdfout.new
+	@diff -Bb hdfout.new hdftst.sav && \
+		echo "*** HDF-SD Fortran interface tests passed ***" || \
+		(echo "*** HDF-SD Fortran interface tests failed ***"; \
+		echo "The above differences are OK if small")
diff --git a/science/hdf5/files/mfhdf/libsrc/Makefile b/science/hdf5/files/mfhdf/libsrc/Makefile
new file mode 100644
index 0000000..7ca23f2
--- /dev/null
+++ b/science/hdf5/files/mfhdf/libsrc/Makefile
@@ -0,0 +1,43 @@
+# $FreeBSD$
+
+.PATH:  ${.CURDIR} ${.CURDIR}/../fortran/config ${.CURDIR}/../fortran
+
+SRCS		= array.c attr.c cdf.c dim.c file.c iarray.c error.c \
+		  globdef.c putget.c putgetg.c sharray.c string.c var.c \
+		  hdfsds.c mfsd.c nssdc.c xdrposix.c \
+		  jackets-fbsd.c mfsdf.c mfsdff.f
+
+LIB		= mfhdf
+SHLIB_MAJOR	= 2
+SHLIB_MINOR	= 3
+
+LIBDIR		= ${PREFIX}/lib
+
+# uncomment the line below to avoid building static libraries
+#INTERNALLIB	= Yes
+
+CFLAGS	+=	-DNDEBUG -DHDF -I${.CURDIR}/../../hdf/src -I${.CURDIR}
+.if ${MACHINE_ARCH} == "i386"
+CFLAGS	+=	-DSWAP
+.endif
+
+LDADD	+=	-L${.CURDIR}/../../hdf/src -ldf
+LDFLAGS	+=	-L. -l${LIB} ${LDADD}
+
+afterinstall:
+	install -c -o root -g wheel -m 444 hdf2netcdf.h local_nc.h \
+		mfhdf.h netcdf.h ${PREFIX}/include
+
+.include <bsd.lib.mk>
+
+test: ${SHLIB_NAME} cdftest hdftest
+	env LD_LIBRARY_PATH=${.CURDIR}:${.CURDIR}/../../hdf/src ./cdftest > cdfout.new
+	@diff cdfout.new testout.sav && \
+		echo "*** netCDF passes formatted test ***" || \
+                (echo "*** netCDF fails formatted test ***" ; \
+                echo "The above differences are OK if small")
+	env LD_LIBRARY_PATH=${.CURDIR}:${.CURDIR}/../../hdf/src ./hdftest > hdfout.new
+	@diff hdfout.new hdfout.sav && \
+		echo "*** HDF passes formatted test ***" || \
+                (echo "*** HDF fails formatted test ***" ; \
+                echo "The above differences are OK if small")
diff --git a/science/hdf5/files/mfhdf/ncdump/Makefile b/science/hdf5/files/mfhdf/ncdump/Makefile
new file mode 100644
index 0000000..727b1de
--- /dev/null
+++ b/science/hdf5/files/mfhdf/ncdump/Makefile
@@ -0,0 +1,22 @@
+# $FreeBSD$
+
+PROG		 = ncdump
+MANDIR		 = ${PREFIX}/man/man
+
+LDFLAGS		+= -L${.CURDIR}/../libsrc -L${.CURDIR}/../../hdf/src -lmfhdf -ldf
+CFLAGS		+= -I${.CURDIR}/../libsrc
+SRCS		=  ncdump.c vardata.c dumplib.c
+
+.include <bsd.prog.mk>
+
+ENVIR		= env LD_LIBRARY_PATH=${.CURDIR}/../../hdf/src:${.CURDIR}/../libsrc
+NCGEN		= ${.CURDIR}/../ncgen/ncgen
+
+test:		$(PROG) test0.cdl
+	${ENVIR} $(NCGEN) -o test0.nc -n test0.cdl
+	${ENVIR} ./$(PROG) test0.nc > test1.cdl
+	${ENVIR} $(NCGEN) -o test1.nc -n test1.cdl
+	${ENVIR} ./$(PROG) -n test0 test1.nc > test2.cdl
+	@cmp test1.cdl test2.cdl && \
+	    echo "*** $(PROGRAM) test successful ***" ; \
+	    rm test1.cdl test1.nc test2.cdl
diff --git a/science/hdf5/files/mfhdf/ncgen/Makefile b/science/hdf5/files/mfhdf/ncgen/Makefile
new file mode 100644
index 0000000..d954137
--- /dev/null
+++ b/science/hdf5/files/mfhdf/ncgen/Makefile
@@ -0,0 +1,72 @@
+# $FreeBSD$
+
+PROG		 = ncgen
+MANDIR		 = ${PREFIX}/man/man
+LDFLAGS		+= -L${.CURDIR}/../libsrc -L${.CURDIR}/../../hdf/src -lmfhdf -ldf
+CFLAGS		+= -I${.CURDIR}/../libsrc -I${.CURDIR}/../../hdf/src -DNDEBUG
+SRCS		 = main.c generate.c load.c ncgentab.c escapes.c \
+		  getfill.c init.c close.c genlib.c
+
+ENVIR		 = env LD_LIBRARY_PATH=${.CURDIR}/../libsrc:${.CURDIR}/../../hdf/src
+NCDUMP		 = ${.CURDIR}/../ncdump/ncdump
+
+test:           $(PROG) test0.cdl btest ctest ftest
+
+ncgenyy.c: ncgen.l
+	${LEX} ${LFLAGS} ncgen.l
+	mv lex.yy.c ncgenyy.c
+	
+ncgentab.c: ncgenyy.c ncgen.y
+	${YACC} ${YFLAGS} ncgen.y
+	mv y.tab.c ncgentab.c
+	mv y.tab.h ncgentab.h
+
+.include <bsd.prog.mk>
+
+#
+# test "-b" option of ncgen
+#
+btest:		$(PROG) test0.cdl test1.cdl
+	${ENVIR} ./$(PROG) -b test1.cdl
+	${ENVIR} $(NCDUMP) test1.nc > test2.cdl
+	@diff test1.cdl test2.cdl && \
+	    echo "*** $(PROG) -b test successful ***"
+
+#
+# test "-c" option of ncgen
+#
+ctest:		test1.cdl ctest0
+	${ENVIR} ./ctest0		# tests `-c' option, creates ctest0.nc
+	${ENVIR} $(NCDUMP) -n test1 ctest0.nc > ctest1.cdl
+	@diff test1.cdl ctest1.cdl && \
+	    echo "*** $(PROG) -c test successful ***"
+
+ctest0:		ncgen test0.cdl
+	${ENVIR} ./$(PROG) -c -o ctest0.nc test0.cdl > test0.c
+	$(CC) $(CFLAGS) -o $@ test0.c ${LDFLAGS}
+
+#
+# test "-f" option of ncgen
+#
+ftest:	test1.cdl ftest0
+	${ENVIR} ./ftest0
+	${ENVIR} $(NCDUMP) -n test1 ftest0.nc > ftest1.cdl
+	@if diff test1.cdl ftest1.cdl; then \
+		echo "*** ncgen -f test successful ***"; \
+	else \
+		echo "*** ncgen -f test failed " \
+		    "(but roundoff differences are OK) ***"; \
+	fi
+
+ftest0:	$(PROG) test0.cdl netcdf.inc
+	${ENVIR} ./$(PROG) -f -o ftest0.nc test0.cdl > test0.f; \
+	$(FC) $(FFLAGS) ${CFLAGS} -o $@ test0.f ${LDFLAGS}
+
+test1.cdl:	test0.nc
+	${ENVIR} $(NCDUMP) -n test1 test0.nc > $@
+
+test0.nc:	$(PROG) test0.cdl
+	${ENVIR} ./$(PROG) -b -o test0.nc test0.cdl
+
+netcdf.inc:
+	ln -s ../fortran/config/netcdf-fbsd.inc $@
diff --git a/science/hdf5/files/mfhdf/nctest/Makefile b/science/hdf5/files/mfhdf/nctest/Makefile
new file mode 100644
index 0000000..722d352
--- /dev/null
+++ b/science/hdf5/files/mfhdf/nctest/Makefile
@@ -0,0 +1,19 @@
+# $FreeBSD$
+
+PROG		 = nctest
+NOMAN		 = 1
+CFLAGS		+= -I${.CURDIR}/../libsrc
+LDFLAGS		+= -L${.CURDIR}/../libsrc -L${.CURDIR}/../../hdf/src -lmfhdf -ldf
+SRCS		= varget.c vargetg.c varput.c varputg.c vardef.c vartests.c \
+		  vputget.c vputgetg.c driver.c cdftests.c dimtests.c rec.c \
+		  atttests.c misctest.c add.c error.c emalloc.c val.c slabs.c
+
+install:
+
+.include <bsd.prog.mk>
+
+test:		$(PROG)
+	@ echo "==========================="
+	@ echo "netCDF C interface tests"
+	@ echo "==========================="
+	env LD_LIBRARY_PATH=${.CURDIR}/../libsrc:${.CURDIR}/../../hdf/src ./$(PROG)
diff --git a/science/hdf5/pkg-plist b/science/hdf5/pkg-plist
index f24c36c..3a4df09 100644
--- a/science/hdf5/pkg-plist
+++ b/science/hdf5/pkg-plist
@@ -20,7 +20,11 @@ bin/vcompat
 bin/vmake
 bin/vshow
 lib/libmfhdf.a
+lib/libmfhdf.so.2
+lib/libmfhdf.so
 lib/libdf.a
+lib/libdf.so
+lib/libdf.so.1
 include/atom.h
 include/bitvect.h
 include/cdeflate.h
@@ -30,7 +34,6 @@ include/crle.h
 include/cskphuff.h
 include/df.h
 include/dfan.h
-include/dffunc.f90
 include/dffunc.inc
 include/dfgr.h
 include/dfi.h
@@ -45,7 +48,6 @@ include/hcomp.h
 include/hcompi.h
 include/hconv.h
 include/hdf.h
-include/hdf.f90
 include/hdf.inc
 include/hdf2netcdf.h
 include/hdfi.h
@@ -63,7 +65,6 @@ include/mfgr.h
 include/mfhdf.h
 include/mstdio.h
 include/netcdf.h
-include/netcdf.f90
 include/netcdf.inc
 include/tbbt.h
 include/vattr.h