Add petsc 2.2.1, portable, Extensible Toolkit for Scientific

computation.

11 files changed, 649 insertions, 0 deletions

diff --git a/math/Makefile b/math/Makefile
index 91a3b6d..99fd446 100644
--- a/math/Makefile
+++ b/math/Makefile
@@ -171,6 +171,7 @@
     SUBDIR += pari
     SUBDIR += pari-devel
     SUBDIR += parmetis
+    SUBDIR += petsc
     SUBDIR += php4-bcmath
     SUBDIR += php4-gmp
     SUBDIR += php5-bcmath
diff --git a/math/petsc/Makefile b/math/petsc/Makefile
new file mode 100644
index 0000000..abdad88
--- /dev/null
+++ b/math/petsc/Makefile
@@ -0,0 +1,230 @@
+# New ports collection makefile for:  petsc
+# Date created:               25 September 2004
+# Whom:                       Thierry Thomas <thierry@pompo.net>
+#
+# $FreeBSD$
+#
+
+PORTNAME=	petsc
+PORTVERSION=	2.2.1
+CATEGORIES=	math parallel
+MASTER_SITES=	ftp://info.mcs.anl.gov/pub/petsc/%SUBDIR%/
+MASTER_SITE_SUBDIR=	. software_old
+DISTNAME=	v${PORTVERSION}-${PATCH_LEVEL}.${PORTNAME}
+
+MAINTAINER=	ports@FreeBSD.org
+COMMENT=	Portable, Extensible Toolkit for Scientific computation
+
+PATCH_LEVEL=	23
+
+HAS_CONFIGURE=		yes
+USE_PYTHON=		yes
+USE_REINPLACE=		yes
+CONFIGURE_SCRIPT=	config/configure.py
+CONFIGURE_LOG=		configure.log
+CONFIGURE_ENV=		PETSC_ARCH=${TARGET}	\
+			PETSC_DIR=${WRKSRC}
+CONFIGURE_ARGS=		--prefix=${PREFIX} --CFLAGS="${CFLAGS}"	\
+			--CXX_CXXFLAGS="${CXXFLAGS}" --FFLAGS="${FFLAGS}"
+MAKEFILE=		makefile
+MAKE_ENV=		PETSC_DIR=${WRKSRC} BOPT=O
+
+PKGMESSAGE=		${WRKDIR}/pkg-message
+
+.if !defined(WITHOUT_X11)
+USE_XLIB=		yes
+CONFIGURE_ARGS+=	--with-x-include=${X11BASE}/include				\
+			--with-x-library=${X11BASE}/lib/libX11.so
+.endif
+
+FFLAGS?=	-O2
+PFX=		${PORTNAME}-${PORTVERSION}
+WRKSRC=		${WRKDIR}/${PFX}
+TARGET=		${OPSYS:L}
+PLIST_SUB=	PFX=${PFX} TARGET=${TARGET}
+
+.if !defined(WITHOUT_BLASLAPACK)
+LIB_DEPENDS+=	f77blas.1:${PORTSDIR}/math/atlas
+LIBBLASLAPACK=	"-L${LOCALBASE}/lib -lalapack -lf77blas -lcblas -latlas -lg2c -lm"
+CONFIGURE_ARGS+=	--with-blas-lapack-lib=${LIBBLASLAPACK}
+.endif
+
+.if !defined(WITHOUT_SUPERLU)
+BUILD_DEPENDS+=	${LOCALBASE}/lib/libsuperlu.a:${PORTSDIR}/math/superlu
+CONFIGURE_ARGS+=	--with-superlu-include=${LOCALBASE}/include/superlu	\
+			--with-superlu-lib="-L${LOCALBASE}/lib -lsuperlu"
+.endif
+
+.if !defined(WITHOUT_UMFPACK)
+BUILD_DEPENDS+=	${LOCALBASE}/lib/libumfpack.a:${PORTSDIR}/math/umfpack
+CONFIGURE_ARGS+=	--with-umfpack-include="${LOCALBASE}/include/UMFPACK"	\
+			--with-umfpack-lib="-L${LOCALBASE}/lib -lumfpack -lamd"
+.endif
+
+.if !defined(NOPORTDOCS)
+PORTDOCS=	*
+#BUILD_DEPENDS+=	c2html:${PORTSDIR}/textproc/c2html	\
+#		pdflatex:${PORTSDIR}/print/teTeX-base	\
+#		doc2lt:${PORTSDIR}/textproc/sowing
+.endif
+
+LIBSCALAPACK=	${LOCALBASE}/lib/libscalapack.a
+LIBBLACS=	${LOCALBASE}/lib/libblacs.a
+MPIDIR=		${LOCALBASE}/mpich
+
+.include <bsd.port.pre.mk>
+
+.if exists(${MPIDIR}/bin/mpiCC)
+WITH_MPI=	yes
+.endif
+.if defined(WITH_MPI)
+PKGNAMESUFFIX+=		-mpich
+BUILD_DEPENDS+=		${MPIDIR}/bin/mpiCC:${PORTSDIR}/net/mpich
+RUN_DEPENDS+=		${MPIDIR}/bin/mpirun:${PORTSDIR}/net/mpich
+CONFIGURE_ARGS+=	--with-mpi-dir=${LOCALBASE}/mpich
+CONFLICTS=		petsc-2*
+PLIST_SUB+=		MPI=""
+.else
+CONFIGURE_ARGS+=	--with-mpi=0
+CONFLICTS=		petsc-mpich-2*
+WITHOUT_BS95=		yes
+WITHOUT_PARMETIS=	yes
+WITHOUT_SPOOLES=	yes
+PLIST_SUB+=		MPI="@comment "
+.endif
+
+.if defined(WITHOUT_BS95)
+CONFIGURE_ARGS+=	--with-blocksolve95=0
+.else
+BUILD_DEPENDS+=	${LOCALBASE}/lib/libBS95.a:${PORTSDIR}/math/blocksolve95
+CONFIGURE_ARGS+=	--with-blocksolve95-include=${LOCALBASE}/include	\
+			--with-blocksolve95-lib="-L${LOCALBASE}/lib -lBS95"
+.endif
+
+.if defined(WITHOUT_PARMETIS)
+CONFIGURE_ARGS+=	--with-parmetis=0
+.else
+BUILD_DEPENDS+=	${LOCALBASE}/lib/parmetis/libparmetis.a:${PORTSDIR}/math/parmetis
+LIBPARMETIS=	-L${LOCALBASE}/lib/parmetis -lparmetis -lmetis -lm
+CONFIGURE_ARGS+=	--with-parmetis=1					\
+			--with-parmetis-include=${LOCALBASE}/include/parmetis	\
+			--with-parmetis-lib="${LIBPARMETIS}"
+.endif
+
+#.if exists(${LIBBLACS})
+#WITH_BLACS=	yes
+#.endif
+#.if defined(WITH_BLACS)
+#BUILD_DEPENDS+=	${LIBBLACS}:${PORTSDIR}/math/blacs
+#CONFIGURE_ARGS+=	--with_mumps=1		\
+#			--with-blacs-lib=1
+#. if exists(${LIBSCALAPACK})
+#WITH_SCALAPACK=	yes
+#. endif
+#. if defined(WITH_SCALAPACK)
+#BUILD_DEPENDS+=	${LIBSCALAPACK}:${PORTSDIR}/math/scalapack
+#CONFIGURE_ARGS+=	--with-scalapack-lib=1
+#. endif
+#.endif
+
+#.if exists(${LOCALBASE}/bin/lgrind)
+#WITH_LGRIND=	yes
+#.endif
+#.if defined(WITH_LGRIND)
+#BUILD_DEPENDS+=	lgrind:${PORTSDIR}/print/lgrind
+#RUN_DEPENDS+=	lgrind:${PORTSDIR}/print/lgrind
+#.endif
+
+#.if exists(${LOCALBASE}/lib/libnetcdf.so)
+#WITH_NETCDF=	yes
+#.endif
+#.if defined(WITH_NETCDF)
+#LIB_DEPENDS+=	netcdf.1:${PORTSDIR}/math/netcdf
+#CONFIGURE_ENV+=	NETCDF_INCLUDE=${LOCALBASE}/include	\
+#		NETCDF_LIB=${LOCALBASE}/lib
+#.endif
+
+.if exists(${LOCALBASE}/bin/svn)
+WITH_SVN=	yes
+.endif
+.if defined(WITH_SVN)
+BUILD_DEPENDS+=	svn:${PORTSDIR}/devel/subversion
+RUN_DEPENDS+=	svn:${PORTSDIR}/devel/subversion
+.endif
+
+#.if exists(${LOCALBASE}/bin/valgrind)
+#WITH_VALGRIND=	yes
+#.endif
+#.if defined(WITH_VALGRIND)
+#BUILD_DEPENDS+=	valgrind:${PORTSDIR}/devel/valgrind
+#RUN_DEPENDS+=	valgrind:${PORTSDIR}/devel/valgrind
+#.endif
+
+.if !defined(WITHOUT_SPOOLES)
+. if exists(${LOCALBASE}/lib/libspooles.a)	\
+  && !exists(${LOCALBASE}/include/spooles/MPI/spoolesMPI.h)
+BROKEN=	Please deinstall spooles and reinstall spooles-mpich
+. else
+BUILD_DEPENDS+=	${LOCALBASE}/lib/libspooles.a:${PORTSDIR}/math/spooles-mpich
+. endif
+CONFIGURE_ARGS+=	--with-spooles-include=${LOCALBASE}/include/spooles	\
+			--with-spooles-lib="-L${LOCALBASE}/lib -lspooles -lm"
+.endif
+
+pre-everything::
+	@${ECHO_MSG}
+.if !defined (WITH_MPI)
+	@${ECHO_MSG} "Define WITH_MPI to use mpich."
+.endif
+.if !defined (WITH_SVN)
+	@${ECHO_MSG} "Define WITH_SVN to use subversion."
+.endif
+.if !defined (WITHOUT_X11)
+	@${ECHO_MSG} "Define WITHOUT_X11 to remove X11 support."
+.endif
+.if !defined (WITHOUT_BLASLAPACK)
+	@${ECHO_MSG} "Define WITHOUT_BLASLAPACK to remove Blas / Lapack support."
+.endif
+.if !defined (WITHOUT_BS95)
+	@${ECHO_MSG} "Define WITHOUT_BS95 to remove BlockSolve95 support."
+.endif
+.if !defined (WITHOUT_PARMETIS)
+	@${ECHO_MSG} "Define WITHOUT_PARMETIS to remove ParMETIS support."
+.endif
+.if !defined (WITHOUT_SPOOLES)
+	@${ECHO_MSG} "Define WITHOUT_SPOOLES to remove SPOOLES support."
+.endif
+.if !defined (WITHOUT_SUPERLU)
+	@${ECHO_MSG} "Define WITHOUT_SUPERLU to remove SuperLU support."
+.endif
+.if !defined (WITHOUT_UMFPACK)
+	@${ECHO_MSG} "Define WITHOUT_UMFPACK to remove UMFPACK support."
+.endif
+	@${ECHO_MSG}
+
+pre-configure:
+	@${REINPLACE_CMD} -e "s|AMD/Include|include/AMD|"			\
+			-e "s|AMD/Lib|${LOCALBASE}/lib|"			\
+		${WRKSRC}/python/PETSc/packages/Umfpack.py
+
+post-install:
+	@${RM} ${PREFIX}/${PFX}/bmake/common/variables.orig
+	${PYTHON_CMD} ${PYTHON_LIBDIR}/compileall.py ${PREFIX}/${PFX}/bin
+	${PYTHON_CMD} -O ${PYTHON_LIBDIR}/compileall.py ${PREFIX}/${PFX}/bin
+	${PYTHON_CMD} ${PYTHON_LIBDIR}/compileall.py ${PREFIX}/${PFX}/bmake
+	${PYTHON_CMD} -O ${PYTHON_LIBDIR}/compileall.py ${PREFIX}/${PFX}/bmake
+.if !defined(NOPORTDOCS)
+	@(cd ${BUILD_WRKSRC}; ${SETENV} ${MAKE_ENV} ${MAKE} ${MAKE_FLAGS}	\
+		${MAKEFILE} ${MAKE_ARGS} install_docs)
+.endif
+	@${SED} -e 's|%%PETSC_DIR%%|${PREFIX}/${PFX}|;s|%%PETSC_ARCH%%|${TARGET}|'	\
+		${FILESDIR}/pkg-message.in > ${PKGMESSAGE}
+	@${CAT} ${PKGMESSAGE}
+
+.if defined(MAINTAINER_MODE)
+test:	build
+	@(cd ${BUILD_WRKSRC};	\
+	${SETENV} ${MAKE_ENV} ${MAKE} ${MAKE_FLAGS} ${MAKEFILE} ${MAKE_ARGS} test)
+.endif
+
+.include <bsd.port.post.mk>
diff --git a/math/petsc/distinfo b/math/petsc/distinfo
new file mode 100644
index 0000000..8c4d846
--- /dev/null
+++ b/math/petsc/distinfo
@@ -0,0 +1,2 @@
+MD5 (v2.2.1-23.petsc.tar.gz) = 627f67283826279e8001e999643ff43e
+SIZE (v2.2.1-23.petsc.tar.gz) = 9103324
diff --git a/math/petsc/files/patch-bmake::common::variables b/math/petsc/files/patch-bmake::common::variables
new file mode 100644
index 0000000..ce3c269
--- /dev/null
+++ b/math/petsc/files/patch-bmake::common::variables
@@ -0,0 +1,20 @@
+--- ./bmake/common/variables.orig	Sat Oct  2 09:13:28 2004
++++ ./bmake/common/variables	Thu Oct  7 22:58:14 2004
+@@ -32,7 +32,7 @@
+ #
+ # The following variables define PETSc compile procedures
+ #
+-PETSC_COMPILE         = ${CC} -c ${COPTFLAGS} ${CFLAGS} ${CCPPFLAGS} ${SOURCEC} ${SSOURCE}
++PETSC_COMPILE         = ${CC} -c ${COPTFLAGS} ${CFLAGS} ${CCPPFLAGS} ${CPPFLAGS} ${SOURCEC} ${SSOURCE}
+ PETSC_COMPILE_SINGLE  = ${CC} -c ${COPTFLAGS} ${CFLAGS} ${CCPPFLAGS} 
+ PETSC_COMPILE_LIBTOOL = files="${SOURCEC} ${SSOURCE}"; \
+                         for filename in $$files; do \
+@@ -122,7 +122,7 @@
+                 ${PETSC_HAVE_PNETCDF}     ${PETSC_HAVE_HDF4}       ${PETSC_HAVE_ML}\
+                 ${PETSC_HAVE_CHACO}       ${PETSC_HAVE_JOSTLE}     ${PETSC_HAVE_PARTY}   ${PETSC_HAVE_SCOTCH}
+ 
+-EXTERNAL_LIB  = ${MPE_LIB}                ${BLOCKSOLVE_LIB}        ${PVODE_LIB}          ${PARMETIS_LIB} \
++EXTERNAL_LIB  = ${MPE_LIB}                ${PARMETIS_LIB}          ${PVODE_LIB}          ${BLOCKSOLVE_LIB} \
+                 ${AMS_LIB}                ${SPAI_LIB}              ${X11_LIB}            ${MATLAB_LIB}   \
+                                                                    ${LUSOL_LIB}          ${DSCPACK_LIB} \
+                 ${RAMG_LIB}               ${TAU_LIB}                                     ${ADIFOR_LIB} \
diff --git a/math/petsc/files/patch-makefile b/math/petsc/files/patch-makefile
new file mode 100644
index 0000000..29cc502
--- /dev/null
+++ b/math/petsc/files/patch-makefile
@@ -0,0 +1,58 @@
+--- makefile.orig	Wed Sep 22 02:57:28 2004
++++ makefile	Sun Oct  3 00:26:00 2004
+@@ -6,6 +6,7 @@
+ ALL: all
+ LOCDIR = . 
+ DIRS   = src include 
++DOCS_DIR = ${INSTALL_DIR}/../share/doc/petsc
+ 
+ include ${PETSC_DIR}/bmake/common/base
+ include ${PETSC_DIR}/bmake/common/test
+@@ -224,7 +225,7 @@
+ 	  echo "BOPT=$$BOPT" > ${PETSC_DIR}/bmake/common/bopt_ ;\
+ 	fi
+ install:
+-	-@if [ "${INSTALL_DIR}" == "${PETSC_DIR}" ]; then \
++	-@if [ "${INSTALL_DIR}" = "${PETSC_DIR}" ]; then \
+ 	  echo "Install directory is current directory; nothing needs to be done";\
+         else \
+ 	  echo Installing PETSc at ${INSTALL_DIR};\
+@@ -258,11 +259,11 @@
+           done;\
+           echo "sh/bash: PETSC_DIR="${INSTALL_DIR}"; export PETSC_DIR";\
+           echo "csh/tcsh: setenv PETSC_DIR "${INSTALL_DIR} ;\
+-          echo "The do make test to verify correct install";\
++          echo "Then do make test to verify correct install";\
+         fi;
+ 
+ install_src:
+-	-@if [ "${INSTALL_DIR}" == "${PETSC_DIR}" ]; then \
++	-@if [ "${INSTALL_DIR}" = "${PETSC_DIR}" ]; then \
+ 	  echo "You did not set a directory to install to";\
+         else \
+ 	  echo Installing PETSc source at ${INSTALL_DIR};\
+@@ -276,17 +277,17 @@
+         fi;
+ 
+ install_docs:
+-	-@if [ "${INSTALL_DIR}" == "${PETSC_DIR}" ]; then \
++	-@if [ "${INSTALL_DIR}" = "${PETSC_DIR}" ]; then \
+ 	  echo "You did not set a directory to install to";\
+         else \
+-	  echo Installing PETSc documentation at ${INSTALL_DIR};\
+-          if [ ! -d `dirname ${INSTALL_DIR}` ]; then \
+-	    ${MKDIR} `dirname ${INSTALL_DIR}` ; \
++	  echo Installing PETSc documentation at ${DOCS_DIR};\
++          if [ ! -d `dirname ${DOCS_DIR}` ]; then \
++	    ${MKDIR} `dirname ${DOCS_DIR}` ; \
+           fi;\
+-          if [ ! -d ${INSTALL_DIR} ]; then \
+-	    ${MKDIR} ${INSTALL_DIR} ; \
++          if [ ! -d ${DOCS_DIR} ]; then \
++	    ${MKDIR} ${DOCS_DIR} ; \
+           fi;\
+-          cp -fr docs ${INSTALL_DIR};\
++          cp -fr docs/* ${DOCS_DIR};\
+           ${RM} -fr docs/tex;\
+         fi;
+ # ------------------------------------------------------------------
diff --git a/math/petsc/files/patch-python::PETSc::packages::Spooles.py b/math/petsc/files/patch-python::PETSc::packages::Spooles.py
new file mode 100644
index 0000000..2b4d626
--- /dev/null
+++ b/math/petsc/files/patch-python::PETSc::packages::Spooles.py
@@ -0,0 +1,12 @@
+--- ./python/PETSc/packages/Spooles.py.orig	Wed Sep 22 02:45:51 2004
++++ ./python/PETSc/packages/Spooles.py	Tue Sep 28 23:09:00 2004
+@@ -71,7 +71,8 @@
+       if 'with-'+self.package+'-lib' in self.framework.argDB: #~spooles-2.2/MPI/src/spoolesMPI.a ~spooles-2.2/spooles.a
+         lib = self.framework.argDB['with-'+self.package+'-lib']
+         (lib_mpi,dummy) = os.path.split(lib)
+-        lib_mpi = os.path.join(lib_mpi,'MPI/src/spoolesMPI.a')
++	# FreeBSD: MPI is included in our spooles.a
++        #lib_mpi = os.path.join(lib_mpi,'MPI/src/spoolesMPI.a')
+         yield ('User specified '+self.PACKAGE+' library',lib_mpi,lib)
+       elif 'with-'+self.package+'-include' in self.framework.argDB:
+         dir = self.framework.argDB['with-'+self.package+'-include'] #~spooles-2.2
diff --git a/math/petsc/files/patch-python::PETSc::packages::X11.py b/math/petsc/files/patch-python::PETSc::packages::X11.py
new file mode 100644
index 0000000..3ecac31
--- /dev/null
+++ b/math/petsc/files/patch-python::PETSc::packages::X11.py
@@ -0,0 +1,27 @@
+--- python/PETSc/packages/X11.py.orig	Wed Sep 22 02:45:51 2004
++++ python/PETSc/packages/X11.py	Sat Oct  2 00:27:14 2004
+@@ -26,7 +26,7 @@
+     import nargs
+     help.addArgument('X11', '-with-x=<bool>',                nargs.ArgBool(None, 1,   'Activate X11'))
+     help.addArgument('X11', '-with-x-include=<include dir>', nargs.ArgDir(None, None, 'Specify an include directory for X11'))
+-    help.addArgument('X11', '-with-x-lib=<X11 lib>',         nargs.Arg(None, None,    'Specify X11 library file'))
++    help.addArgument('X11', '-with-x-library=<X11 lib>',         nargs.Arg(None, None,    'Specify X11 library file'))
+     return
+ 
+   def generateGuesses(self):
+@@ -123,6 +123,7 @@
+       if not os.path.isdir(self.framework.argDB['with-x-include']):
+         raise RuntimeError('Invalid X include directory specified by --with-x-include='+os.path.abspath(self.framework.argDB['with-x-include']))
+       includeDir = self.framework.argDB['with-x-include']
++      foundInclude = 1
+     else:
+       testInclude  = 'X11/Intrinsic.h'
+ 
+@@ -144,6 +145,7 @@
+       if not os.path.isfile(self.framework.argDB['with-x-library']):
+         raise RuntimeError('Invalid X library specified by --with-x-library='+os.path.abspath(self.framework.argDB['with-x-library']))
+       libraryDir = os.path.dirname(self.framework.argDB['with-x-library'])
++      foundLibrary = 1
+     else:
+       testLibrary  = 'Xt'
+       testFunction = 'XtMalloc'
diff --git a/math/petsc/files/patch-src::mat::impls::rowbs::mpi::mpirowbs.h b/math/petsc/files/patch-src::mat::impls::rowbs::mpi::mpirowbs.h
new file mode 100644
index 0000000..4deb3db
--- /dev/null
+++ b/math/petsc/files/patch-src::mat::impls::rowbs::mpi::mpirowbs.h
@@ -0,0 +1,13 @@
+--- src/mat/impls/rowbs/mpi/mpirowbs.h.orig	Sat Oct  2 09:13:29 2004
++++ src/mat/impls/rowbs/mpi/mpirowbs.h	Tue Oct  5 21:58:07 2004
+@@ -5,8 +5,8 @@
+ #include "src/mat/matimpl.h"
+ 
+ EXTERN_C_BEGIN
+-#include "BSsparse.h"
+-#include "BSprivate.h"
++#include <BSsparse.h>
++#include <BSprivate.h>
+ EXTERN_C_END
+ 
+ /*
diff --git a/math/petsc/files/pkg-message.in b/math/petsc/files/pkg-message.in
new file mode 100644
index 0000000..9e26616
--- /dev/null
+++ b/math/petsc/files/pkg-message.in
@@ -0,0 +1,5 @@
+===================================================
+Before using PETSc, you'll have to set PETSC_DIR to
+%%PETSC_DIR%%
+and eventually PETSC_ARCH to %%PETSC_ARCH%%.
+===================================================
diff --git a/math/petsc/pkg-descr b/math/petsc/pkg-descr
new file mode 100644
index 0000000..898c2c5
--- /dev/null
+++ b/math/petsc/pkg-descr
@@ -0,0 +1,9 @@
+PETSc, the Portable, Extensible Toolkit for Scientific computation, provides
+sets of tools for the parallel (as well as serial), numerical solution of PDEs
+that require solving large-scale, sparse nonlinear systems of equations. PETSc
+includes nonlinear and linear equation solvers that employ a variety of Newton
+techniques and Krylov subspace methods. PETSc provides several parallel sparse
+matrix formats, including compressed row, block compressed row, and block
+diagonal storage.
+
+WWW:  http://acts.nersc.gov/petsc/index.html
diff --git a/math/petsc/pkg-plist b/math/petsc/pkg-plist
new file mode 100644
index 0000000..318a83a
--- /dev/null
+++ b/math/petsc/pkg-plist
@@ -0,0 +1,272 @@
+%%PFX%%/bin/adiforfix.py
+%%PFX%%/bin/adiforfix.pyc
+%%PFX%%/bin/adiforfix.pyo
+%%PFX%%/bin/adprocess.py
+%%PFX%%/bin/adprocess.pyc
+%%PFX%%/bin/adprocess.pyo
+%%PFX%%/bin/chibaoutput
+%%PFX%%/bin/config/acconfig.h
+%%PFX%%/bin/config/aclocal.m4
+%%PFX%%/bin/config/config.guess
+%%PFX%%/bin/config/config.sub
+%%PFX%%/bin/config/findftnlibs
+%%PFX%%/bin/config/install-sh
+%%PFX%%/bin/configarch
+%%PFX%%/bin/fixtags.py
+%%PFX%%/bin/fixtags.pyc
+%%PFX%%/bin/fixtags.pyo
+%%PFX%%/bin/hostnames.chiba
+%%PFX%%/bin/matlab/PetscBinaryRead.m
+%%PFX%%/bin/matlab/PetscBinaryWrite.m
+%%PFX%%/bin/mpiexec.valgrind
+%%PFX%%/bin/mpirun.chiba
+%%PFX%%/bin/mpirun.gmalloc
+%%PFX%%/bin/mpirun.lam
+%%PFX%%/bin/mpirun.poe
+%%PFX%%/bin/mpirun.prun
+%%PFX%%/bin/mpirun.uni
+%%PFX%%/bin/parseargs.py
+%%PFX%%/bin/parseargs.pyc
+%%PFX%%/bin/parseargs.pyo
+%%PFX%%/bin/petsc_libtool
+%%PFX%%/bin/petscarch
+%%PFX%%/bin/petscmpirun
+%%PFX%%/bin/popup
+%%PFX%%/bin/taucc.py
+%%PFX%%/bin/taucc.pyc
+%%PFX%%/bin/taucc.pyo
+%%PFX%%/bin/update.py
+%%PFX%%/bin/update.pyc
+%%PFX%%/bin/update.pyo
+%%PFX%%/bin/urlget
+%%PFX%%/bin/urlget.py
+%%PFX%%/bin/urlget.pyc
+%%PFX%%/bin/urlget.pyo
+%%PFX%%/bin/win32fe/win32fe.exe
+%%PFX%%/bin/win32fe/win32feutils.dll
+%%PFX%%/bmake/adic.init
+%%PFX%%/bmake/adicmf.init
+%%PFX%%/bmake/common/base
+%%PFX%%/bmake/common/bopt_
+%%PFX%%/bmake/common/bopt_0
+%%PFX%%/bmake/common/bopt_0_c++
+%%PFX%%/bmake/common/bopt_O
+%%PFX%%/bmake/common/bopt_O_c++
+%%PFX%%/bmake/common/bopt_O_c++_single
+%%PFX%%/bmake/common/bopt_O_complex
+%%PFX%%/bmake/common/bopt_O_matsingle
+%%PFX%%/bmake/common/bopt_O_single
+%%PFX%%/bmake/common/bopt_g
+%%PFX%%/bmake/common/bopt_g_c++
+%%PFX%%/bmake/common/bopt_g_c++_single
+%%PFX%%/bmake/common/bopt_g_complex
+%%PFX%%/bmake/common/bopt_g_matsingle
+%%PFX%%/bmake/common/bopt_g_single
+%%PFX%%/bmake/common/rules
+%%PFX%%/bmake/common/rules.fortran.cpp
+%%PFX%%/bmake/common/rules.fortran.nocpp
+%%PFX%%/bmake/common/rules.fortran.none
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