Povchem is a tool to generate POV file from a PDB(Protein

DataBank) entry. One can adjust many parameters for a high
quality molecular graphic.
PR:		 ports/6008
Submitted by:	Frank Chen Hsiung Chan <frankch@waru.life.nthu.edu.tw>

7 files changed, 78 insertions, 0 deletions

diff --git a/biology/povchem/Makefile b/biology/povchem/Makefile
new file mode 100644
index 0000000..030556d
--- /dev/null
+++ b/biology/povchem/Makefile
@@ -0,0 +1,34 @@
+# New ports collection Makefile for: povchem
+# Version required:     1.0
+# Date created:         Mar 14 1998
+# Whom:                 frankch@waru.life.nthu.edu.tw
+#
+# $Id$
+#
+
+DISTNAME=	povchem-1.0
+CATEGORIES=     biology graphics
+MASTER_SITES=   http://cherubino.med.jhmi.edu/~paul/PC_Dist/v1.00/
+DISTFILES=	povchem.c \
+		povchem.cfg \
+		periodic.tab
+
+MAINTAINER=     frankch@waru.life.nthu.edu.tw
+
+NO_WRKSUBDIR=	yes
+
+pre-extract:
+	@${MKDIR} ${WRKSRC}
+	@${CP} ${DISTDIR}/povchem.c ${WRKSRC}
+	@${CP} ${DISTDIR}/povchem.cfg ${WRKSRC}
+	@${CP} ${DISTDIR}/periodic.tab ${WRKSRC}
+
+do-extract:
+	@${TOUCH} ${TOUCH_FLAGS} ${EXTRACT_COOKIE}
+
+do-install:
+	@${INSTALL_PROGRAM} ${WRKSRC}/povchem ${PREFIX}/bin
+	@${INSTALL_DATA} ${WRKSRC}/povchem.cfg ${PREFIX}/etc
+	@${INSTALL_DATA} ${WRKSRC}/periodic.tab ${PREFIX}/share
+
+.include <bsd.port.mk>
diff --git a/biology/povchem/distinfo b/biology/povchem/distinfo
new file mode 100644
index 0000000..e2e088f
--- /dev/null
+++ b/biology/povchem/distinfo
@@ -0,0 +1,3 @@
+MD5 (povchem.c) = a8eceada2acdee9f69e018a49033dfc4
+MD5 (povchem.cfg) = 23c6417b12d9562c68e1242b7e339138
+MD5 (periodic.tab) = bdb231f0c8b6e1e37c3b3b025d73a7b0
diff --git a/biology/povchem/files/patch-ab b/biology/povchem/files/patch-ab
new file mode 100644
index 0000000..222f2bf
--- /dev/null
+++ b/biology/povchem/files/patch-ab
@@ -0,0 +1,20 @@
+--- povchem.c.orig	Sat Mar 14 17:19:41 1998
++++ povchem.c	Sat Mar 14 17:20:32 1998
+@@ -482,7 +482,7 @@
+  */
+   
+   if (*fileName==NULL) {
+-    New_String(fileName,"povchem.cfg");
++    New_String(fileName,"/usr/local/etc/povchem.cfg");
+     if ((config=fopen(*fileName,"r"))==NULL) {
+       puts("Can't read the configuration file \"povchem.cfg\"!");
+       perror("Reason");
+@@ -731,7 +731,7 @@
+ 
+ no_config:
+ 
+-  if (!PERIODIC_TABLE_FILE) New_String(&PERIODIC_TABLE_FILE,"periodic.tab");
++  if (!PERIODIC_TABLE_FILE) New_String(&PERIODIC_TABLE_FILE,"/usr/local/share/periodic.tab");
+   if (!FINISH) New_String(&FINISH,"Plastic");
+   if (!FINISH_DECLARATION) New_String(&FINISH_DECLARATION,"\
+   finish {\n\
diff --git a/biology/povchem/files/patch-ac b/biology/povchem/files/patch-ac
new file mode 100644
index 0000000..bf45153
--- /dev/null
+++ b/biology/povchem/files/patch-ac
@@ -0,0 +1,11 @@
+--- povchem.cfg.orig	Sun Mar 15 14:14:16 1998
++++ povchem.cfg	Sun Mar 15 14:15:13 1998
+@@ -331,7 +331,7 @@
+ # the type of image POV-Ray generates - usually TGA (also called TARGA).
+ #
+ #Viewer = c:\util\dvpeg.exe
+-Viewer = /usr/local/bin/xv
++Viewer = /usr/X11R6/bin/xv
+ 
+ # If ColorSplit is Proportional, 'Power' determines the power of the vdW radii
+ # to which the point of color change is proportional. See the manual for
diff --git a/biology/povchem/pkg-comment b/biology/povchem/pkg-comment
new file mode 100644
index 0000000..c0d5024
--- /dev/null
+++ b/biology/povchem/pkg-comment
@@ -0,0 +1 @@
+Simple yet powerful tool to generate POV from a PDB file
diff --git a/biology/povchem/pkg-descr b/biology/povchem/pkg-descr
new file mode 100644
index 0000000..0edf525
--- /dev/null
+++ b/biology/povchem/pkg-descr
@@ -0,0 +1,6 @@
+PovChem is a powerful tool to generate a POV format file from a PDB entry.
+It supports CPK, Ball-n-Stick and Cylinder model. You could adjust a lot
+of parameters to get a good molecuar graphic.
+
+The document could be found at 
+    http://cherubino.med.jhmi.edu/~paul/Manual.html
diff --git a/biology/povchem/pkg-plist b/biology/povchem/pkg-plist
new file mode 100644
index 0000000..85c28b2
--- /dev/null
+++ b/biology/povchem/pkg-plist
@@ -0,0 +1,3 @@
+bin/povchem
+etc/povchem.cfg
+share/periodic.tab